Wall clock time and date at job start Tue Mar 31 2020 21:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46875 * 2 1 4 4 C 1.52991 * 109.47080 * 240.00374 * 2 1 3 5 5 O 1.45200 * 109.47085 * 119.99689 * 2 1 3 6 6 C 1.34636 * 116.99796 * 60.00569 * 5 2 1 7 7 O 1.21519 * 119.99844 * 359.97438 * 6 5 2 8 8 N 1.34775 * 119.99883 * 179.97438 * 6 5 2 9 9 C 1.47580 * 134.48857 * 179.97438 * 8 6 5 10 10 C 1.53948 * 86.11574 * 155.35759 * 9 8 6 11 11 F 1.39901 * 113.74222 * 269.15323 * 10 9 8 12 12 C 1.53001 * 113.74398 * 137.95108 * 10 9 8 13 13 N 1.46499 * 109.47114 * 181.92440 * 12 10 9 14 14 S 1.65598 * 119.99790 * 164.99987 * 13 12 10 15 15 O 1.42099 * 106.40395 * 311.46262 * 14 13 12 16 16 O 1.42101 * 106.40367 * 178.54131 * 14 13 12 17 17 C 1.76199 * 107.21820 * 65.00132 * 14 13 12 18 18 H 1.07997 * 120.00250 * 0.02562 * 17 14 13 19 19 C 1.37880 * 120.00013 * 179.72553 * 17 14 13 20 20 N 1.31514 * 119.99843 * 180.02562 * 19 17 14 21 21 Si 1.86801 * 119.99948 * 359.97438 * 19 17 14 22 22 H 1.48501 * 109.46896 * 90.00154 * 21 19 17 23 23 H 1.48499 * 109.47039 * 210.00314 * 21 19 17 24 24 H 1.48501 * 109.47275 * 330.00114 * 21 19 17 25 25 C 1.47805 * 134.45751 * 359.86153 * 8 6 5 26 26 H 1.09000 * 109.47634 * 300.00152 * 1 2 3 27 27 H 1.08999 * 109.47386 * 59.99961 * 1 2 3 28 28 H 1.09001 * 109.46868 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47118 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47146 * 300.00186 * 3 2 1 31 31 H 1.09008 * 109.47081 * 59.99834 * 3 2 1 32 32 H 1.09001 * 109.47023 * 299.99603 * 4 2 1 33 33 H 1.08996 * 109.47616 * 59.99999 * 4 2 1 34 34 H 1.09008 * 109.47350 * 179.97438 * 4 2 1 35 35 H 1.09004 * 113.77517 * 41.06031 * 9 8 6 36 36 H 1.09000 * 113.87249 * 269.67287 * 9 8 6 37 37 H 1.09006 * 109.46782 * 61.92451 * 12 10 9 38 38 H 1.09000 * 109.47060 * 301.92818 * 12 10 9 39 39 H 0.96994 * 120.00078 * 344.99938 * 13 12 10 40 40 H 0.97009 * 119.99998 * 179.97438 * 20 19 17 41 41 H 1.09010 * 113.76761 * 90.38339 * 25 8 6 42 42 H 1.08995 * 113.84109 * 318.91814 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5094 0.5039 8 7 2.0681 -2.6656 2.4167 9 6 1.8727 -4.0477 2.8959 10 6 3.1945 -3.8576 3.6619 11 9 4.3261 -4.2481 2.9380 12 6 3.1702 -4.4248 5.0827 13 7 4.4518 -4.1537 5.7387 14 16 4.5913 -4.3133 7.3810 15 8 3.4900 -3.6162 7.9470 16 8 5.9444 -4.0182 7.6994 17 6 4.3507 -6.0167 7.7619 18 1 4.1552 -6.7247 6.9701 19 6 4.4180 -6.4469 9.0701 20 7 4.2389 -7.7184 9.3543 21 14 4.7651 -5.2238 10.4387 22 1 3.4831 -4.6726 10.9468 23 1 5.4823 -5.9083 11.5442 24 1 5.6056 -4.1181 9.9132 25 6 2.9047 -2.3470 3.5928 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6767 -1.7488 -1.2492 33 1 1.6767 -0.2073 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 1.9261 -4.7980 2.1071 36 1 1.0040 -4.1716 3.5426 37 1 3.0037 -5.5013 5.0413 38 1 2.3659 -3.9543 5.6481 39 1 5.2185 -3.8808 5.2110 40 1 4.2866 -8.0211 10.2747 41 1 2.3394 -1.9687 4.4446 42 1 3.7807 -1.7418 3.3594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192988042.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:29 Heat of formation + Delta-G solvation = -168.120280 kcal Electronic energy + Delta-G solvation = -28053.404341 eV Core-core repulsion = 23690.780776 eV Total energy + Delta-G solvation = -4362.623565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -47.88269 -40.95593 -39.14711 -36.75108 -35.73125 -34.68187 -34.50973 -34.19439 -33.07287 -29.92712 -27.70354 -27.65225 -26.79858 -26.48246 -25.76972 -22.21171 -20.69439 -19.54939 -19.18698 -18.10710 -17.58470 -17.13072 -17.00644 -16.59719 -16.21462 -16.01566 -15.40043 -14.99995 -14.90053 -14.70960 -14.48677 -14.20001 -13.77824 -13.63059 -13.60492 -13.34479 -13.10788 -12.78986 -12.73310 -12.48863 -12.45998 -12.17793 -12.16817 -11.99095 -11.71913 -11.60662 -11.43537 -11.14779 -10.88109 -10.78089 -10.70505 -10.61902 -10.56894 -10.19767 -9.88645 -9.37320 -9.25205 -9.14010 -8.71693 -6.84668 -5.39720 1.67047 1.96091 2.63704 3.04603 3.14401 3.23695 3.33369 3.64166 3.91494 3.92908 4.22947 4.42406 4.43487 4.48173 4.56788 4.61041 4.67237 4.85374 5.09889 5.17307 5.18086 5.23504 5.24630 5.26229 5.39669 5.45369 5.48294 5.54823 5.56981 5.70612 5.73861 5.81658 6.00623 6.03307 6.06031 6.24828 6.35876 7.32317 7.42269 7.56710 8.09513 8.15514 8.65994 10.27458 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.002551 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.009491 B =10975.071806 C =11256.284920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.360 6.360 6 C 0.679 3.321 7 O -0.566 6.566 8 N -0.634 5.634 9 C 0.120 3.880 10 C 0.079 3.921 11 F -0.173 7.173 12 C 0.120 3.880 13 N -1.123 6.123 14 S 2.676 3.324 15 O -1.010 7.010 16 O -1.004 7.004 17 C -1.016 5.016 18 H 0.122 0.878 19 C 0.153 3.847 20 N -0.822 5.822 21 Si 0.802 3.198 22 H -0.246 1.246 23 H -0.255 1.255 24 H -0.219 1.219 25 C 0.092 3.908 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.410 0.590 40 H 0.281 0.719 41 H 0.115 0.885 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.081 12.869 -16.739 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.275 6.275 6 C 0.436 3.564 7 O -0.456 6.456 8 N -0.376 5.376 9 C -0.002 4.002 10 C 0.058 3.942 11 F -0.154 7.154 12 C -0.009 4.009 13 N -0.879 5.879 14 S 2.778 3.222 15 O -0.999 6.999 16 O -0.995 6.995 17 C -1.151 5.151 18 H 0.140 0.860 19 C -0.067 4.067 20 N -0.451 5.451 21 Si 0.622 3.378 22 H -0.170 1.170 23 H -0.179 1.179 24 H -0.141 1.141 25 C -0.031 4.031 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.133 0.867 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.242 0.758 40 H 0.092 0.908 41 H 0.133 0.867 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.351 13.404 -16.457 22.155 hybrid contribution 0.393 -0.297 0.113 0.506 sum -5.958 13.107 -16.343 21.781 Atomic orbital electron populations 1.22517 0.93955 1.05056 1.02517 1.22104 0.94412 0.91569 0.82108 1.21861 1.02352 0.92417 1.03136 1.22520 1.01670 1.03476 0.96414 1.86325 1.71603 1.23197 1.46332 1.17371 0.77822 0.80223 0.81006 1.90904 1.41246 1.70490 1.42946 1.48553 1.54210 1.14154 1.20715 1.23826 0.96946 0.82335 0.97128 1.22557 0.83961 0.95853 0.91830 1.92900 1.51954 1.91737 1.78769 1.21514 0.87984 1.02131 0.89229 1.55460 1.17083 1.87081 1.28302 1.01363 0.73328 0.77345 0.70153 1.93408 1.55364 1.76112 1.75050 1.93491 1.37298 1.87435 1.81232 1.30419 1.65018 1.17404 1.02211 0.85994 1.24431 0.88988 0.95337 0.97936 1.69987 1.39214 1.14515 1.21362 0.87861 0.82039 0.83533 0.84385 1.17006 1.17944 1.14129 1.24052 0.95323 0.95918 0.87818 0.92105 0.91105 0.89417 0.91403 0.90100 0.91402 0.89402 0.91119 0.92100 0.87938 0.86686 0.89565 0.87935 0.75774 0.90849 0.86729 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 8.37 37.16 0.31 -1.38 16 2 C 0.13 1.31 1.13 -90.62 -0.10 1.21 16 3 C -0.14 -0.99 8.85 37.16 0.33 -0.66 16 4 C -0.18 -1.74 8.37 37.15 0.31 -1.42 16 5 O -0.36 -4.42 9.87 -40.31 -0.40 -4.82 16 6 C 0.68 9.16 8.22 54.05 0.44 9.60 16 7 O -0.57 -8.53 12.61 -19.29 -0.24 -8.77 16 8 N -0.63 -7.58 3.61 -183.92 -0.66 -8.24 16 9 C 0.12 1.21 8.30 -2.97 -0.02 1.18 16 10 C 0.08 0.91 1.86 -89.68 -0.17 0.74 16 11 F -0.17 -2.33 16.75 2.25 0.04 -2.29 16 12 C 0.12 1.62 5.91 -4.04 -0.02 1.60 16 13 N -1.12 -18.96 5.96 -10.61 -0.06 -19.02 16 14 S 2.68 61.44 4.24 -107.50 -0.46 60.99 16 15 O -1.01 -24.42 16.33 -57.17 -0.93 -25.35 16 16 O -1.00 -25.52 15.99 -57.17 -0.91 -26.43 16 17 C -1.02 -26.69 10.26 30.60 0.31 -26.38 16 18 H 0.12 3.21 8.06 -52.49 -0.42 2.79 16 19 C 0.15 4.22 5.47 -17.82 -0.10 4.12 16 20 N -0.82 -22.99 13.96 55.43 0.77 -22.22 16 21 Si 0.80 19.81 26.55 -169.99 -4.51 15.30 16 22 H -0.25 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.22 -5.50 5.59 56.52 0.32 -5.19 16 25 C 0.09 0.97 8.35 -2.83 -0.02 0.95 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 1.01 5.88 -51.93 -0.31 0.71 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.09 1.04 5.88 -51.93 -0.31 0.73 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.12 0.88 8.10 -51.93 -0.42 0.46 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.10 1.28 7.59 -51.93 -0.39 0.88 16 39 H 0.41 6.17 8.24 -34.47 -0.28 5.89 16 40 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.11 1.05 7.99 -51.92 -0.41 0.63 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 362.23 15.07 5.46 5.46 Total: -1.00 -34.06 362.23 -6.64 -40.70 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.00 Total: 5.14 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 1.27 Total: -10.44 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: 0.05 Total: -49.48 kcal Atomic # 8 Polarization: -62.88 SS G_CDS: -2.49 Total: -65.37 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.51 Total: 15.30 kcal Atomic # 16 Polarization: 61.44 SS G_CDS: -0.46 Total: 60.99 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.06 -6.64 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988042.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.418 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds