Wall clock time and date at job start Tue Mar 31 2020 21:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46875 * 2 1 4 4 C 1.52991 * 109.47080 * 240.00374 * 2 1 3 5 5 O 1.45200 * 109.47085 * 119.99689 * 2 1 3 6 6 C 1.34636 * 116.99796 * 60.00569 * 5 2 1 7 7 O 1.21519 * 119.99844 * 359.97438 * 6 5 2 8 8 N 1.34775 * 119.99883 * 179.97438 * 6 5 2 9 9 C 1.47580 * 134.48857 * 179.97438 * 8 6 5 10 10 C 1.53948 * 86.11574 * 155.35759 * 9 8 6 11 11 F 1.39901 * 113.74222 * 269.15323 * 10 9 8 12 12 C 1.53001 * 113.74398 * 137.95108 * 10 9 8 13 13 N 1.46499 * 109.47114 * 181.92440 * 12 10 9 14 14 S 1.65598 * 119.99790 * 164.99987 * 13 12 10 15 15 O 1.42099 * 106.40395 * 311.46262 * 14 13 12 16 16 O 1.42101 * 106.40367 * 178.54131 * 14 13 12 17 17 C 1.76199 * 107.21820 * 65.00132 * 14 13 12 18 18 H 1.07997 * 120.00250 * 0.02562 * 17 14 13 19 19 C 1.37880 * 120.00013 * 179.72553 * 17 14 13 20 20 N 1.31514 * 119.99843 * 180.02562 * 19 17 14 21 21 Si 1.86801 * 119.99948 * 359.97438 * 19 17 14 22 22 H 1.48501 * 109.46896 * 90.00154 * 21 19 17 23 23 H 1.48499 * 109.47039 * 210.00314 * 21 19 17 24 24 H 1.48501 * 109.47275 * 330.00114 * 21 19 17 25 25 C 1.47805 * 134.45751 * 359.86153 * 8 6 5 26 26 H 1.09000 * 109.47634 * 300.00152 * 1 2 3 27 27 H 1.08999 * 109.47386 * 59.99961 * 1 2 3 28 28 H 1.09001 * 109.46868 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47118 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47146 * 300.00186 * 3 2 1 31 31 H 1.09008 * 109.47081 * 59.99834 * 3 2 1 32 32 H 1.09001 * 109.47023 * 299.99603 * 4 2 1 33 33 H 1.08996 * 109.47616 * 59.99999 * 4 2 1 34 34 H 1.09008 * 109.47350 * 179.97438 * 4 2 1 35 35 H 1.09004 * 113.77517 * 41.06031 * 9 8 6 36 36 H 1.09000 * 113.87249 * 269.67287 * 9 8 6 37 37 H 1.09006 * 109.46782 * 61.92451 * 12 10 9 38 38 H 1.09000 * 109.47060 * 301.92818 * 12 10 9 39 39 H 0.96994 * 120.00078 * 344.99938 * 13 12 10 40 40 H 0.97009 * 119.99998 * 179.97438 * 20 19 17 41 41 H 1.09010 * 113.76761 * 90.38339 * 25 8 6 42 42 H 1.08995 * 113.84109 * 318.91814 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5094 0.5039 8 7 2.0681 -2.6656 2.4167 9 6 1.8727 -4.0477 2.8959 10 6 3.1945 -3.8576 3.6619 11 9 4.3261 -4.2481 2.9380 12 6 3.1702 -4.4248 5.0827 13 7 4.4518 -4.1537 5.7387 14 16 4.5913 -4.3133 7.3810 15 8 3.4900 -3.6162 7.9470 16 8 5.9444 -4.0182 7.6994 17 6 4.3507 -6.0167 7.7619 18 1 4.1552 -6.7247 6.9701 19 6 4.4180 -6.4469 9.0701 20 7 4.2389 -7.7184 9.3543 21 14 4.7651 -5.2238 10.4387 22 1 3.4831 -4.6726 10.9468 23 1 5.4823 -5.9083 11.5442 24 1 5.6056 -4.1181 9.9132 25 6 2.9047 -2.3470 3.5928 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6767 -1.7488 -1.2492 33 1 1.6767 -0.2073 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 1.9261 -4.7980 2.1071 36 1 1.0040 -4.1716 3.5426 37 1 3.0037 -5.5013 5.0413 38 1 2.3659 -3.9543 5.6481 39 1 5.2185 -3.8808 5.2110 40 1 4.2866 -8.0211 10.2747 41 1 2.3394 -1.9687 4.4446 42 1 3.7807 -1.7418 3.3594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192988042.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:28 Heat of formation + Delta-G solvation = -194.694456 kcal Electronic energy + Delta-G solvation = -28054.556684 eV Core-core repulsion = 23690.780776 eV Total energy + Delta-G solvation = -4363.775908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.119 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.88813 -41.86264 -40.02706 -37.74037 -37.59333 -36.43873 -35.95079 -35.13084 -35.01856 -30.96243 -28.51659 -28.37572 -28.31431 -27.61150 -26.90099 -23.11013 -21.67461 -20.97767 -20.40228 -19.42759 -19.04633 -18.56326 -18.09229 -17.87401 -17.25938 -17.00802 -16.91268 -16.19834 -16.11799 -15.81453 -15.45477 -15.39348 -15.15681 -14.97068 -14.92919 -14.54288 -14.34050 -14.05882 -13.64394 -13.36425 -13.35794 -13.30353 -13.12460 -12.95569 -12.91216 -12.88229 -12.64203 -12.52798 -12.50844 -12.49121 -12.07604 -11.86202 -11.66144 -11.42349 -11.28121 -11.18845 -11.11574 -10.26831 -10.03955 -8.91296 -7.46949 0.16200 0.83613 1.10931 1.19678 1.27249 1.65875 1.93831 2.42538 2.48640 2.56975 2.89420 3.00578 3.34453 3.47979 3.72095 3.74936 3.79127 3.93151 4.06574 4.23371 4.34981 4.39852 4.46483 4.51007 4.59158 4.60752 4.67572 4.75414 4.79432 4.83924 4.85777 4.86613 5.01591 5.11357 5.26753 5.31145 5.42332 5.43023 6.07498 6.22982 6.40068 6.60263 7.13926 8.25873 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.002551 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.009491 B =10975.071806 C =11256.284920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.122 3.878 3 C -0.135 4.135 4 C -0.179 4.179 5 O -0.367 6.367 6 C 0.672 3.328 7 O -0.589 6.589 8 N -0.639 5.639 9 C 0.121 3.879 10 C 0.082 3.918 11 F -0.186 7.186 12 C 0.110 3.890 13 N -1.111 6.111 14 S 2.705 3.295 15 O -1.020 7.020 16 O -1.029 7.029 17 C -1.036 5.036 18 H 0.109 0.891 19 C 0.108 3.892 20 N -0.856 5.856 21 Si 0.824 3.176 22 H -0.236 1.236 23 H -0.228 1.228 24 H -0.226 1.226 25 C 0.093 3.907 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.143 0.857 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.420 0.580 40 H 0.290 0.710 41 H 0.134 0.866 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.528 14.638 -17.168 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.086 3.914 3 C -0.192 4.192 4 C -0.237 4.237 5 O -0.282 6.282 6 C 0.429 3.571 7 O -0.480 6.480 8 N -0.382 5.382 9 C 0.000 4.000 10 C 0.061 3.939 11 F -0.166 7.166 12 C -0.018 4.018 13 N -0.871 5.871 14 S 2.804 3.196 15 O -1.009 7.009 16 O -1.020 7.020 17 C -1.169 5.169 18 H 0.128 0.872 19 C -0.109 4.109 20 N -0.486 5.486 21 Si 0.641 3.359 22 H -0.159 1.159 23 H -0.151 1.151 24 H -0.148 1.148 25 C -0.029 4.029 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.122 0.878 36 H 0.161 0.839 37 H 0.109 0.891 38 H 0.136 0.864 39 H 0.255 0.745 40 H 0.100 0.900 41 H 0.152 0.848 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.787 15.149 -16.865 23.664 hybrid contribution 0.513 -0.854 0.117 1.003 sum -6.274 14.295 -16.748 22.896 Atomic orbital electron populations 1.22464 0.93685 1.03654 1.03739 1.22491 0.94847 0.92735 0.81376 1.21888 1.02340 0.90563 1.04439 1.22473 1.01507 1.02167 0.97504 1.86333 1.71698 1.22655 1.47526 1.17566 0.77814 0.80618 0.81103 1.90894 1.42325 1.71047 1.43781 1.48670 1.54090 1.14757 1.20663 1.24011 0.96978 0.81728 0.97283 1.22500 0.84212 0.96582 0.90574 1.92878 1.52825 1.91953 1.78970 1.21822 0.86572 1.03005 0.90355 1.54947 1.19010 1.86648 1.26494 1.00368 0.72312 0.75480 0.71438 1.93388 1.55605 1.75466 1.76464 1.93451 1.38543 1.87172 1.82786 1.31001 1.64197 1.19784 1.01878 0.87249 1.25164 0.89126 0.96596 0.99981 1.70022 1.40505 1.15630 1.22458 0.87501 0.82621 0.82223 0.83513 1.15945 1.15101 1.14847 1.24207 0.95637 0.95162 0.87941 0.91923 0.88825 0.92030 0.91431 0.87669 0.91214 0.92107 0.88759 0.92242 0.87828 0.83914 0.89109 0.86365 0.74473 0.89992 0.84821 0.87779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 8.37 71.98 0.60 -2.48 16 2 C 0.12 2.21 1.13 -10.80 -0.01 2.20 16 3 C -0.14 -1.61 8.85 71.98 0.64 -0.97 16 4 C -0.18 -3.23 8.37 71.98 0.60 -2.62 16 5 O -0.37 -8.71 9.87 -55.45 -0.55 -9.25 16 6 C 0.67 17.74 8.22 129.79 1.07 18.81 16 7 O -0.59 -17.81 12.61 19.78 0.25 -17.56 16 8 N -0.64 -14.42 3.61 -966.22 -3.49 -17.91 16 9 C 0.12 2.24 8.30 86.49 0.72 2.95 16 10 C 0.08 1.75 1.86 -10.13 -0.02 1.73 16 11 F -0.19 -4.77 16.75 44.97 0.75 -4.02 16 12 C 0.11 2.76 5.91 86.38 0.51 3.27 16 13 N -1.11 -35.77 5.96 -187.48 -1.12 -36.89 16 14 S 2.70 121.05 4.24 -56.49 -0.24 120.81 16 15 O -1.02 -47.56 16.33 -128.00 -2.09 -49.65 16 16 O -1.03 -51.29 15.99 -128.00 -2.05 -53.34 16 17 C -1.04 -54.34 10.26 67.73 0.69 -53.64 16 18 H 0.11 5.83 8.06 -2.91 -0.02 5.80 16 19 C 0.11 5.93 5.47 84.66 0.46 6.39 16 20 N -0.86 -48.01 13.96 21.45 0.30 -47.71 16 21 Si 0.82 39.30 26.55 68.60 1.82 41.12 16 22 H -0.24 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.23 -9.82 7.11 99.48 0.71 -9.11 16 24 H -0.23 -11.01 5.59 99.48 0.56 -10.46 16 25 C 0.09 1.78 8.35 86.45 0.72 2.50 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.41 5.88 -2.39 -0.01 1.40 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.06 1.45 5.88 -2.39 -0.01 1.44 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.14 1.82 8.10 -2.39 -0.02 1.81 16 37 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.12 2.65 7.59 -2.39 -0.02 2.63 16 39 H 0.42 12.00 8.24 -96.75 -0.80 11.21 16 40 H 0.29 14.71 8.31 -92.70 -0.77 13.94 16 41 H 0.13 2.07 7.99 -2.38 -0.02 2.05 16 42 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -72.70 362.23 -0.32 -73.03 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.10 Total: 23.22 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 5.99 Total: -21.86 kcal Atomic # 7 Polarization: -98.19 SS G_CDS: -4.31 Total: -102.50 kcal Atomic # 8 Polarization: -125.37 SS G_CDS: -4.43 Total: -129.80 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.75 Total: -4.02 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 1.82 Total: 41.12 kcal Atomic # 16 Polarization: 121.05 SS G_CDS: -0.24 Total: 120.81 kcal Total: -72.70 -0.32 -73.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988042.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.669 kcal (2) G-P(sol) polarization free energy of solvation -72.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds