Wall clock time and date at job start Tue Mar 31 2020 21:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46778 * 2 1 4 4 C 1.52998 * 109.47051 * 240.00262 * 2 1 3 5 5 O 1.45200 * 109.47645 * 119.99873 * 2 1 3 6 6 C 1.34635 * 116.99683 * 60.00171 * 5 2 1 7 7 O 1.21511 * 119.99998 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00071 * 180.02562 * 6 5 2 9 9 C 1.47290 * 125.79121 * 359.97438 * 8 6 5 10 10 C 1.54325 * 107.30599 * 178.92556 * 9 8 6 11 11 H 1.08997 * 110.72163 * 96.18354 * 10 9 8 12 12 F 1.39899 * 110.71939 * 219.45546 * 10 9 8 13 13 C 1.55154 * 102.94303 * 337.81911 * 10 9 8 14 14 H 1.09008 * 111.00345 * 277.42446 * 13 10 9 15 15 N 1.46496 * 111.00463 * 153.57766 * 13 10 9 16 16 S 1.65599 * 120.00219 * 151.35171 * 15 13 10 17 17 O 1.42102 * 106.40541 * 178.53627 * 16 15 13 18 18 O 1.42101 * 106.40071 * 311.45972 * 16 15 13 19 19 C 1.76208 * 107.21906 * 64.99569 * 16 15 13 20 20 H 1.07995 * 119.99518 * 0.02562 * 19 16 15 21 21 C 1.37875 * 119.99473 * 180.02562 * 19 16 15 22 22 N 1.31511 * 120.00476 * 359.97438 * 21 19 16 23 23 Si 1.86802 * 119.99505 * 180.02562 * 21 19 16 24 24 H 1.48504 * 109.47356 * 89.99381 * 23 21 19 25 25 H 1.48499 * 109.47250 * 209.99452 * 23 21 19 26 26 H 1.48507 * 109.47049 * 329.99851 * 23 21 19 27 27 C 1.47425 * 125.65138 * 179.97438 * 8 6 5 28 28 H 1.09007 * 109.47119 * 299.99816 * 1 2 3 29 29 H 1.08996 * 109.47796 * 60.00033 * 1 2 3 30 30 H 1.09001 * 109.47018 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46691 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46960 * 299.99836 * 3 2 1 33 33 H 1.08995 * 109.46807 * 60.00062 * 3 2 1 34 34 H 1.08998 * 109.47240 * 299.99468 * 4 2 1 35 35 H 1.09004 * 109.47586 * 59.99613 * 4 2 1 36 36 H 1.08998 * 109.47135 * 179.97438 * 4 2 1 37 37 H 1.09004 * 109.85762 * 59.50172 * 9 8 6 38 38 H 1.08995 * 110.00297 * 298.43119 * 9 8 6 39 39 H 0.97000 * 120.00143 * 331.34488 * 15 13 10 40 40 H 0.97001 * 119.99953 * 180.02562 * 22 21 19 41 41 H 1.09002 * 110.36696 * 85.25946 * 27 8 6 42 42 H 1.08995 * 110.36608 * 323.04783 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0141 -0.6844 1.1855 6 6 1.6524 -1.9723 1.3383 7 8 0.9510 -2.5094 0.5040 8 7 2.0674 -2.6654 2.4170 9 6 2.9162 -2.1437 3.5019 10 6 3.1054 -3.2833 4.5252 11 1 4.0415 -3.8118 4.3451 12 9 3.0590 -2.7873 5.8325 13 6 1.8907 -4.2071 4.2451 14 1 0.9978 -3.8435 4.7538 15 7 2.1838 -5.5904 4.6278 16 16 0.9573 -6.5947 5.1068 17 8 1.5530 -7.8570 5.3734 18 8 0.2008 -5.8734 6.0695 19 6 -0.0997 -6.8271 3.7162 20 1 0.1281 -6.3431 2.7780 21 6 -1.2174 -7.6269 3.8259 22 7 -1.4944 -8.2167 4.9683 23 14 -2.3374 -7.8739 2.3515 24 1 -1.8770 -9.0509 1.5717 25 1 -3.7281 -8.1033 2.8192 26 1 -2.2976 -6.6639 1.4914 27 6 1.7470 -4.0746 2.7084 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6765 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1299 -0.7208 -1.2495 37 1 2.4269 -1.2945 3.9790 38 1 3.8839 -1.8382 3.1041 39 1 3.0963 -5.9182 4.6006 40 1 -2.2805 -8.7797 5.0453 41 1 2.4509 -4.7360 2.2032 42 1 0.7262 -4.3027 2.4018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192988937.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:36 Heat of formation + Delta-G solvation = -244.404688 kcal Electronic energy + Delta-G solvation = -28783.812965 eV Core-core repulsion = 24417.881459 eV Total energy + Delta-G solvation = -4365.931506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.119 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.74236 -41.89407 -39.75740 -37.71527 -37.40669 -36.18324 -35.66805 -35.18604 -34.71108 -30.92389 -29.45038 -28.34530 -28.26251 -28.21843 -25.13771 -22.87275 -22.34074 -21.13557 -20.48835 -19.66684 -19.23466 -18.34388 -18.03843 -17.63374 -17.23816 -17.10189 -16.72043 -16.26180 -15.97225 -15.79216 -15.60404 -15.47004 -15.23196 -15.10593 -14.44989 -14.28266 -14.02565 -13.77667 -13.46971 -13.32576 -13.30790 -13.07894 -13.03176 -12.88353 -12.87119 -12.83916 -12.54353 -12.47936 -12.44546 -12.36367 -12.33443 -12.07205 -11.81772 -11.38874 -11.25850 -11.15233 -11.04832 -10.50400 -9.89911 -8.77334 -7.48905 0.23202 0.90906 1.32345 1.33833 1.49071 1.67678 2.18392 2.57230 2.68544 2.73402 3.08815 3.24505 3.38115 3.66941 3.77447 3.81114 3.82858 3.96929 4.04102 4.17934 4.34921 4.43874 4.51368 4.56572 4.63785 4.68043 4.73353 4.79113 4.84128 4.85760 4.88228 4.91167 5.11156 5.17509 5.28419 5.30903 5.36288 5.43494 5.88902 6.25377 6.27169 6.78952 7.17693 8.19461 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012756 B = 0.003973 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.540243 B = 7046.326444 C = 8746.800011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.123 3.877 3 C -0.133 4.133 4 C -0.180 4.180 5 O -0.358 6.358 6 C 0.666 3.334 7 O -0.588 6.588 8 N -0.602 5.602 9 C 0.088 3.912 10 C 0.086 3.914 11 H 0.149 0.851 12 F -0.203 7.203 13 C 0.116 3.884 14 H 0.099 0.901 15 N -1.102 6.102 16 S 2.720 3.280 17 O -1.036 7.036 18 O -1.039 7.039 19 C -1.037 5.037 20 H 0.123 0.877 21 C 0.077 3.923 22 N -0.891 5.891 23 Si 0.981 3.019 24 H -0.253 1.253 25 H -0.263 1.263 26 H -0.254 1.254 27 C 0.108 3.892 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.122 0.878 39 H 0.424 0.576 40 H 0.299 0.701 41 H 0.104 0.896 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.468 18.780 -11.254 24.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.087 3.913 3 C -0.190 4.190 4 C -0.237 4.237 5 O -0.273 6.273 6 C 0.422 3.578 7 O -0.479 6.479 8 N -0.344 5.344 9 C -0.035 4.035 10 C 0.048 3.952 11 H 0.167 0.833 12 F -0.183 7.183 13 C 0.005 3.995 14 H 0.118 0.882 15 N -0.860 5.860 16 S 2.820 3.180 17 O -1.026 7.026 18 O -1.029 7.029 19 C -1.170 5.170 20 H 0.141 0.859 21 C -0.137 4.137 22 N -0.523 5.523 23 Si 0.800 3.200 24 H -0.177 1.177 25 H -0.188 1.188 26 H -0.178 1.178 27 C -0.016 4.016 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.140 0.860 39 H 0.260 0.740 40 H 0.109 0.891 41 H 0.122 0.878 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.868 18.342 -10.553 23.349 hybrid contribution -0.759 -0.671 -0.779 1.277 sum 9.110 17.671 -11.332 22.884 Atomic orbital electron populations 1.22505 0.94461 1.03441 1.03649 1.22479 0.94327 0.92971 0.81495 1.21873 1.02635 0.90116 1.04345 1.22475 1.01877 1.02034 0.97307 1.86314 1.71357 1.22094 1.47513 1.17558 0.78381 0.80939 0.80937 1.90934 1.42067 1.71201 1.43656 1.46901 1.53406 1.12480 1.21585 1.22754 0.97513 0.96317 0.86916 1.23005 1.00579 0.93800 0.77828 0.83329 1.92859 1.97774 1.88958 1.38741 1.22368 1.00246 0.82474 0.94371 0.88249 1.55277 1.24009 1.21055 1.85652 0.99974 0.72219 0.70752 0.75010 1.93333 1.78864 1.43403 1.87015 1.93327 1.71749 1.74370 1.63467 1.30918 1.24967 1.42306 1.18820 0.85900 1.25853 0.97641 0.90179 1.00007 1.69976 1.28184 1.26999 1.27097 0.85246 0.77065 0.80222 0.77443 1.17689 1.18756 1.17797 1.22788 1.03684 0.80335 0.94776 0.92053 0.88859 0.92526 0.90747 0.87920 0.91235 0.92374 0.89009 0.91445 0.88974 0.86020 0.73963 0.89097 0.87830 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.73 8.37 71.98 0.60 -3.13 16 2 C 0.12 2.33 1.13 -10.79 -0.01 2.32 16 3 C -0.13 -1.51 8.85 71.99 0.64 -0.88 16 4 C -0.18 -3.32 8.37 71.98 0.60 -2.72 16 5 O -0.36 -8.41 9.50 -55.44 -0.53 -8.94 16 6 C 0.67 19.14 7.93 129.79 1.03 20.17 16 7 O -0.59 -20.35 12.14 19.81 0.24 -20.11 16 8 N -0.60 -15.57 3.34 -941.43 -3.14 -18.71 16 9 C 0.09 1.66 6.74 86.68 0.58 2.24 16 10 C 0.09 1.85 4.41 31.78 0.14 1.99 16 11 H 0.15 2.10 8.02 -2.39 -0.02 2.09 16 12 F -0.20 -5.31 17.19 44.97 0.77 -4.54 16 13 C 0.12 3.57 3.50 46.38 0.16 3.73 16 14 H 0.10 3.59 7.62 -2.38 -0.02 3.57 16 15 N -1.10 -38.90 5.65 -163.63 -0.92 -39.83 16 16 S 2.72 140.04 5.01 -56.49 -0.28 139.76 16 17 O -1.04 -59.56 18.02 -128.00 -2.31 -61.87 16 18 O -1.04 -60.71 17.41 -128.00 -2.23 -62.94 16 19 C -1.04 -55.16 9.72 67.73 0.66 -54.50 16 20 H 0.12 5.86 6.70 -2.91 -0.02 5.84 16 21 C 0.08 4.22 5.46 84.65 0.46 4.68 16 22 N -0.89 -52.61 13.19 21.45 0.28 -52.33 16 23 Si 0.98 41.76 29.54 68.60 2.03 43.78 16 24 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 26 H -0.25 -10.47 7.11 99.48 0.71 -9.77 16 27 C 0.11 3.16 6.33 86.85 0.55 3.71 16 28 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.56 5.88 -2.39 -0.01 1.55 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 1.47 5.88 -2.39 -0.01 1.46 16 35 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 1.70 8.10 -2.38 -0.02 1.68 16 38 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.42 11.76 8.74 -96.75 -0.85 10.92 16 40 H 0.30 15.91 8.31 -92.71 -0.77 15.14 16 41 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.08 2.72 7.21 -2.39 -0.02 2.70 16 Total: -1.00 -80.56 362.85 -0.46 -81.02 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.21 Total: 27.08 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 5.42 Total: -22.39 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -3.78 Total: -110.87 kcal Atomic # 8 Polarization: -149.03 SS G_CDS: -4.82 Total: -153.85 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.77 Total: -4.54 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: 140.04 SS G_CDS: -0.28 Total: 139.76 kcal Total: -80.56 -0.46 -81.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988937.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.381 kcal (2) G-P(sol) polarization free energy of solvation -80.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds