Wall clock time and date at job start Tue Mar 31 2020 20:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.46920 * 2 1 4 4 C 1.53007 * 109.47150 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47135 * 179.97438 * 4 3 2 6 6 C 1.36937 * 120.00130 * 275.00113 * 5 4 3 7 7 H 1.08000 * 120.00024 * 39.65492 * 6 5 4 8 8 C 1.38815 * 120.00100 * 219.66055 * 6 5 4 9 9 N 1.31623 * 119.99643 * 309.59355 * 8 6 5 10 10 Si 1.86797 * 120.00427 * 129.59537 * 8 6 5 11 11 H 1.48501 * 109.47258 * 89.99908 * 10 8 6 12 12 H 1.48497 * 109.47223 * 210.00230 * 10 8 6 13 13 H 1.48506 * 109.46849 * 330.00144 * 10 8 6 14 14 S 1.65602 * 120.00115 * 94.99998 * 5 4 3 15 15 O 1.42103 * 106.40339 * 216.44720 * 14 5 4 16 16 O 1.42104 * 106.39968 * 349.36487 * 14 5 4 17 17 C 1.76202 * 107.21778 * 102.90500 * 14 5 4 18 18 C 1.37756 * 120.04630 * 123.63335 * 17 14 5 19 19 C 1.38942 * 120.09374 * 179.72110 * 18 17 14 20 20 O 1.35757 * 119.90735 * 180.25639 * 19 18 17 21 21 C 1.42896 * 117.00058 * 180.30076 * 20 19 18 22 22 C 1.38983 * 120.19021 * 0.55407 * 19 18 17 23 23 C 1.37720 * 120.09207 * 359.72472 * 22 19 18 24 24 C 1.39730 * 120.05007 * 303.90587 * 17 14 5 25 25 C 1.43208 * 120.09378 * 0.02742 * 24 17 14 26 26 N 4.28683 * 164.36290 * 82.75832 * 2 1 3 27 27 H 1.08998 * 109.47220 * 299.99767 * 1 2 3 28 28 H 1.08996 * 109.47344 * 60.00129 * 1 2 3 29 29 H 1.09005 * 109.46944 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47309 * 239.99862 * 2 1 3 31 31 H 1.08996 * 109.47344 * 119.99871 * 2 1 3 32 32 H 1.08992 * 109.47398 * 60.00026 * 3 2 1 33 33 H 1.09003 * 109.47185 * 299.99707 * 3 2 1 34 34 H 1.09000 * 109.47098 * 59.99343 * 4 3 2 35 35 H 1.09003 * 109.46777 * 299.99883 * 4 3 2 36 36 H 0.96998 * 119.99989 * 186.03457 * 9 8 6 37 37 H 1.08002 * 119.95066 * 0.02562 * 18 17 14 38 38 H 1.09000 * 109.47376 * 59.99954 * 21 20 19 39 39 H 1.09008 * 109.47038 * 180.02562 * 21 20 19 40 40 H 1.09007 * 109.46793 * 299.99692 * 21 20 19 41 41 H 1.07998 * 119.95750 * 179.69651 * 22 19 18 42 42 H 1.08007 * 120.04611 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8237 -0.0013 6 6 4.1885 3.5034 -1.1829 7 1 3.4416 3.3920 -1.9551 8 6 5.2804 4.3355 -1.3883 9 7 5.5981 5.2392 -0.4856 10 14 6.2990 4.1727 -2.9457 11 1 5.7401 5.0594 -3.9976 12 1 7.7029 4.5648 -2.6622 13 1 6.2636 2.7643 -3.4153 14 16 4.4526 3.5632 1.4270 15 8 4.0588 4.9224 1.2974 16 8 3.9805 2.7127 2.4629 17 6 6.2106 3.5636 1.5460 18 6 6.8904 4.7502 1.7122 19 6 8.2762 4.7512 1.8119 20 8 8.9419 5.9222 1.9808 21 6 10.3664 5.8517 2.0693 22 6 8.9834 3.5573 1.7331 23 6 8.3121 2.3671 1.5614 24 6 6.9177 2.3611 1.4663 25 6 6.2155 1.1258 1.2872 26 7 5.6581 0.1457 1.1463 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.9329 0.9288 -0.8908 35 1 3.9336 0.9286 0.8892 36 1 6.3053 5.8779 -0.6668 37 1 6.3450 5.6806 1.7699 38 1 10.7663 5.4170 1.1532 39 1 10.7722 6.8546 2.2033 40 1 10.6473 5.2299 2.9194 41 1 10.0609 3.5629 1.8062 42 1 8.8624 1.4398 1.4998 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193672097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:55 Heat of formation + Delta-G solvation = -39.560926 kcal Electronic energy + Delta-G solvation = -28802.331925 eV Core-core repulsion = 24876.052336 eV Total energy + Delta-G solvation = -3926.279589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.20782 -39.08203 -38.09369 -37.75001 -36.99545 -36.13772 -35.48262 -33.61299 -32.34054 -31.68962 -29.57989 -28.30280 -26.43794 -24.51029 -24.20458 -23.75548 -21.97031 -20.72222 -20.49018 -19.36101 -18.45114 -17.54789 -17.53792 -17.03109 -16.69989 -16.61754 -16.15816 -15.89786 -15.51628 -15.28295 -15.16275 -14.89449 -14.83449 -14.59217 -14.26041 -14.04681 -13.72211 -13.55877 -13.47140 -13.39385 -13.28703 -13.08871 -12.73859 -12.56115 -12.39388 -12.32839 -12.21736 -12.08849 -12.02908 -11.99273 -11.79729 -11.72422 -11.40699 -11.28386 -10.72941 -10.01431 -9.80604 -9.25376 -8.49377 -5.73658 -0.47959 0.01604 0.15539 1.38597 1.46298 1.51504 1.64573 1.83578 2.25555 2.29411 2.60368 2.67360 2.81980 2.86045 3.30378 3.68727 3.90181 3.99367 4.04672 4.08730 4.27724 4.31409 4.43599 4.45357 4.47230 4.47456 4.75661 4.77090 4.82724 4.86350 4.89585 4.95336 4.98650 5.07108 5.11386 5.18638 5.28571 5.32520 5.43481 5.46321 5.52492 5.77779 6.31531 6.35604 6.38408 7.04321 7.53204 8.46315 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013766 B = 0.005409 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.567245 B = 5175.147126 C = 5794.274571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.137 4.137 4 C 0.123 3.877 5 N -0.859 5.859 6 C -0.334 4.334 7 H 0.094 0.906 8 C 0.022 3.978 9 N -0.793 5.793 10 Si 0.935 3.065 11 H -0.273 1.273 12 H -0.271 1.271 13 H -0.266 1.266 14 S 2.595 3.405 15 O -0.971 6.971 16 O -1.047 7.047 17 C -0.546 4.546 18 C -0.034 4.034 19 C 0.127 3.873 20 O -0.327 6.327 21 C 0.010 3.990 22 C -0.162 4.162 23 C -0.044 4.044 24 C -0.013 4.013 25 C 0.240 3.760 26 N -0.407 5.407 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.033 0.967 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.285 0.715 37 H 0.136 0.864 38 H 0.071 0.929 39 H 0.120 0.880 40 H 0.078 0.922 41 H 0.188 0.812 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.447 -3.052 1.497 11.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.176 4.176 4 C -0.003 4.003 5 N -0.689 5.689 6 C -0.474 4.474 7 H 0.112 0.888 8 C -0.193 4.193 9 N -0.427 5.427 10 Si 0.757 3.243 11 H -0.199 1.199 12 H -0.196 1.196 13 H -0.190 1.190 14 S 2.701 3.299 15 O -0.960 6.960 16 O -1.037 7.037 17 C -0.635 4.635 18 C -0.054 4.054 19 C 0.079 3.921 20 O -0.241 6.241 21 C -0.084 4.084 22 C -0.181 4.181 23 C -0.065 4.065 24 C -0.018 4.018 25 C -0.074 4.074 26 N -0.084 5.084 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.154 0.846 38 H 0.089 0.911 39 H 0.138 0.862 40 H 0.096 0.904 41 H 0.205 0.795 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 10.111 -3.900 2.239 11.066 hybrid contribution 0.916 0.817 -0.783 1.456 sum 11.027 -3.083 1.456 11.543 Atomic orbital electron populations 1.21746 0.94464 1.02431 1.01744 1.21435 0.97006 0.94821 1.02245 1.22073 0.96467 0.98238 1.00865 1.21628 0.94029 0.82501 1.02141 1.53068 1.80636 1.17602 1.17597 1.18846 1.05622 1.31841 0.91073 0.88834 1.26257 0.96402 0.94816 1.01845 1.70753 1.25390 1.08912 1.37677 0.85861 0.78667 0.79493 0.80292 1.19873 1.19596 1.19038 1.06724 0.75043 0.73670 0.74443 1.93398 1.80002 1.37218 1.85377 1.93361 1.80050 1.69350 1.60937 1.30623 1.26923 0.97180 1.08758 1.19979 0.92219 0.96915 0.96302 1.19364 0.91268 0.86434 0.95037 1.86089 1.23417 1.27851 1.86697 1.23532 0.75708 1.06169 1.02942 1.21701 1.02387 0.90135 1.03834 1.21354 0.89995 1.00431 0.94716 1.15603 0.94193 0.84613 1.07394 1.25843 0.94508 0.93754 0.93254 1.80938 1.06061 1.11790 1.09648 0.93454 0.92341 0.90869 0.90786 0.92557 0.94776 0.91801 0.90785 0.91047 0.90396 0.84581 0.91060 0.86176 0.90387 0.79506 0.80523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.91 71.98 0.71 -3.22 16 2 C -0.12 -3.78 5.93 30.59 0.18 -3.60 16 3 C -0.14 -5.61 5.51 30.60 0.17 -5.44 16 4 C 0.12 5.58 3.86 86.38 0.33 5.92 16 5 N -0.86 -43.46 2.54 -343.45 -0.87 -44.34 16 6 C -0.33 -17.19 9.01 84.03 0.76 -16.43 16 7 H 0.09 4.76 8.06 -2.91 -0.02 4.74 16 8 C 0.02 1.07 4.90 84.86 0.42 1.48 16 9 N -0.79 -40.13 6.62 21.65 0.14 -39.98 16 10 Si 0.93 38.03 29.70 68.60 2.04 40.07 16 11 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 12 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 13 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 14 S 2.60 137.15 4.38 -56.49 -0.25 136.90 16 15 O -0.97 -57.19 14.24 -128.00 -1.82 -59.01 16 16 O -1.05 -57.81 15.93 -128.00 -2.04 -59.85 16 17 C -0.55 -24.31 4.66 22.52 0.10 -24.21 16 18 C -0.03 -1.39 7.32 22.32 0.16 -1.22 16 19 C 0.13 3.97 6.69 22.62 0.15 4.12 16 20 O -0.33 -8.86 10.49 -90.83 -0.95 -9.82 16 21 C 0.01 0.15 9.81 113.37 1.11 1.26 16 22 C -0.16 -3.86 9.01 22.33 0.20 -3.66 16 23 C -0.04 -1.19 9.75 22.52 0.22 -0.97 16 24 C -0.01 -0.50 5.74 -21.30 -0.12 -0.63 16 25 C 0.24 9.73 11.97 88.33 1.06 10.79 16 26 N -0.41 -16.78 15.44 19.01 0.29 -16.49 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 32 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.07 3.18 8.08 -2.39 -0.02 3.16 16 35 H 0.07 3.32 3.89 -2.39 -0.01 3.31 16 36 H 0.28 13.36 8.22 -92.71 -0.76 12.60 16 37 H 0.14 6.17 6.93 -2.91 -0.02 6.15 16 38 H 0.07 0.83 7.65 -2.39 -0.02 0.81 16 39 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.08 0.79 7.65 -2.38 -0.02 0.78 16 41 H 0.19 2.47 6.28 -2.91 -0.02 2.45 16 42 H 0.18 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -70.69 354.68 3.05 -67.64 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 1.05 Total: 20.68 kcal Atomic # 6 Polarization: -41.26 SS G_CDS: 5.46 Total: -35.80 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -0.43 Total: -100.80 kcal Atomic # 8 Polarization: -123.86 SS G_CDS: -4.81 Total: -128.67 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.04 Total: 40.07 kcal Atomic # 16 Polarization: 137.15 SS G_CDS: -0.25 Total: 136.90 kcal Total: -70.69 3.05 -67.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193672097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.076 kcal (2) G-P(sol) polarization free energy of solvation -70.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds