Wall clock time and date at job start Tue Mar 31 2020 20:47:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52999 * 109.46920 * 2 1
4 4 C 1.53007 * 109.47150 * 180.02562 * 3 2 1
5 5 N 1.46492 * 109.47135 * 179.97438 * 4 3 2
6 6 C 1.36937 * 120.00130 * 275.00113 * 5 4 3
7 7 H 1.08000 * 120.00024 * 39.65492 * 6 5 4
8 8 C 1.38815 * 120.00100 * 219.66055 * 6 5 4
9 9 N 1.31623 * 119.99643 * 309.59355 * 8 6 5
10 10 Si 1.86797 * 120.00427 * 129.59537 * 8 6 5
11 11 H 1.48501 * 109.47258 * 89.99908 * 10 8 6
12 12 H 1.48497 * 109.47223 * 210.00230 * 10 8 6
13 13 H 1.48506 * 109.46849 * 330.00144 * 10 8 6
14 14 S 1.65602 * 120.00115 * 94.99998 * 5 4 3
15 15 O 1.42103 * 106.40339 * 216.44720 * 14 5 4
16 16 O 1.42104 * 106.39968 * 349.36487 * 14 5 4
17 17 C 1.76202 * 107.21778 * 102.90500 * 14 5 4
18 18 C 1.37756 * 120.04630 * 123.63335 * 17 14 5
19 19 C 1.38942 * 120.09374 * 179.72110 * 18 17 14
20 20 O 1.35757 * 119.90735 * 180.25639 * 19 18 17
21 21 C 1.42896 * 117.00058 * 180.30076 * 20 19 18
22 22 C 1.38983 * 120.19021 * 0.55407 * 19 18 17
23 23 C 1.37720 * 120.09207 * 359.72472 * 22 19 18
24 24 C 1.39730 * 120.05007 * 303.90587 * 17 14 5
25 25 C 1.43208 * 120.09378 * 0.02742 * 24 17 14
26 26 N 4.28683 * 164.36290 * 82.75832 * 2 1 3
27 27 H 1.08998 * 109.47220 * 299.99767 * 1 2 3
28 28 H 1.08996 * 109.47344 * 60.00129 * 1 2 3
29 29 H 1.09005 * 109.46944 * 180.02562 * 1 2 3
30 30 H 1.09006 * 109.47309 * 239.99862 * 2 1 3
31 31 H 1.08996 * 109.47344 * 119.99871 * 2 1 3
32 32 H 1.08992 * 109.47398 * 60.00026 * 3 2 1
33 33 H 1.09003 * 109.47185 * 299.99707 * 3 2 1
34 34 H 1.09000 * 109.47098 * 59.99343 * 4 3 2
35 35 H 1.09003 * 109.46777 * 299.99883 * 4 3 2
36 36 H 0.96998 * 119.99989 * 186.03457 * 9 8 6
37 37 H 1.08002 * 119.95066 * 0.02562 * 18 17 14
38 38 H 1.09000 * 109.47376 * 59.99954 * 21 20 19
39 39 H 1.09008 * 109.47038 * 180.02562 * 21 20 19
40 40 H 1.09007 * 109.46793 * 299.99692 * 21 20 19
41 41 H 1.07998 * 119.95750 * 179.69651 * 22 19 18
42 42 H 1.08007 * 120.04611 * 179.97438 * 23 22 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 3.5700 1.4426 -0.0006
5 7 4.0582 2.8237 -0.0013
6 6 4.1885 3.5034 -1.1829
7 1 3.4416 3.3920 -1.9551
8 6 5.2804 4.3355 -1.3883
9 7 5.5981 5.2392 -0.4856
10 14 6.2990 4.1727 -2.9457
11 1 5.7401 5.0594 -3.9976
12 1 7.7029 4.5648 -2.6622
13 1 6.2636 2.7643 -3.4153
14 16 4.4526 3.5632 1.4270
15 8 4.0588 4.9224 1.2974
16 8 3.9805 2.7127 2.4629
17 6 6.2106 3.5636 1.5460
18 6 6.8904 4.7502 1.7122
19 6 8.2762 4.7512 1.8119
20 8 8.9419 5.9222 1.9808
21 6 10.3664 5.8517 2.0693
22 6 8.9834 3.5573 1.7331
23 6 8.3121 2.3671 1.5614
24 6 6.9177 2.3611 1.4663
25 6 6.2155 1.1258 1.2872
26 7 5.6581 0.1457 1.1463
27 1 -0.3633 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3633 -1.0277 0.0005
30 1 1.8933 -0.5139 -0.8900
31 1 1.8933 -0.5138 0.8899
32 1 1.6766 1.9563 0.8899
33 1 1.6766 1.9563 -0.8900
34 1 3.9329 0.9288 -0.8908
35 1 3.9336 0.9286 0.8892
36 1 6.3053 5.8779 -0.6668
37 1 6.3450 5.6806 1.7699
38 1 10.7663 5.4170 1.1532
39 1 10.7722 6.8546 2.2033
40 1 10.6473 5.2299 2.9194
41 1 10.0609 3.5629 1.8062
42 1 8.8624 1.4398 1.4998
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001193672097.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:47:55
Heat of formation + Delta-G solvation = -39.560926 kcal
Electronic energy + Delta-G solvation = -28802.331925 eV
Core-core repulsion = 24876.052336 eV
Total energy + Delta-G solvation = -3926.279589 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 338.113 amu
Computer time = 1.84 seconds
Orbital eigenvalues (eV)
-41.20782 -39.08203 -38.09369 -37.75001 -36.99545 -36.13772 -35.48262 -33.61299
-32.34054 -31.68962 -29.57989 -28.30280 -26.43794 -24.51029 -24.20458 -23.75548
-21.97031 -20.72222 -20.49018 -19.36101 -18.45114 -17.54789 -17.53792 -17.03109
-16.69989 -16.61754 -16.15816 -15.89786 -15.51628 -15.28295 -15.16275 -14.89449
-14.83449 -14.59217 -14.26041 -14.04681 -13.72211 -13.55877 -13.47140 -13.39385
-13.28703 -13.08871 -12.73859 -12.56115 -12.39388 -12.32839 -12.21736 -12.08849
-12.02908 -11.99273 -11.79729 -11.72422 -11.40699 -11.28386 -10.72941 -10.01431
-9.80604 -9.25376 -8.49377 -5.73658 -0.47959 0.01604 0.15539 1.38597
1.46298 1.51504 1.64573 1.83578 2.25555 2.29411 2.60368 2.67360
2.81980 2.86045 3.30378 3.68727 3.90181 3.99367 4.04672 4.08730
4.27724 4.31409 4.43599 4.45357 4.47230 4.47456 4.75661 4.77090
4.82724 4.86350 4.89585 4.95336 4.98650 5.07108 5.11386 5.18638
5.28571 5.32520 5.43481 5.46321 5.52492 5.77779 6.31531 6.35604
6.38408 7.04321 7.53204 8.46315
Molecular weight = 338.11amu
Principal moments of inertia in cm(-1)
A = 0.013766 B = 0.005409 C = 0.004831
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2033.567245 B = 5175.147126 C = 5794.274571
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.117 4.117
3 C -0.137 4.137
4 C 0.123 3.877
5 N -0.859 5.859
6 C -0.334 4.334
7 H 0.094 0.906
8 C 0.022 3.978
9 N -0.793 5.793
10 Si 0.935 3.065
11 H -0.273 1.273
12 H -0.271 1.271
13 H -0.266 1.266
14 S 2.595 3.405
15 O -0.971 6.971
16 O -1.047 7.047
17 C -0.546 4.546
18 C -0.034 4.034
19 C 0.127 3.873
20 O -0.327 6.327
21 C 0.010 3.990
22 C -0.162 4.162
23 C -0.044 4.044
24 C -0.013 4.013
25 C 0.240 3.760
26 N -0.407 5.407
27 H 0.046 0.954
28 H 0.057 0.943
29 H 0.072 0.928
30 H 0.073 0.927
31 H 0.056 0.944
32 H 0.033 0.967
33 H 0.063 0.937
34 H 0.074 0.926
35 H 0.072 0.928
36 H 0.285 0.715
37 H 0.136 0.864
38 H 0.071 0.929
39 H 0.120 0.880
40 H 0.078 0.922
41 H 0.188 0.812
42 H 0.177 0.823
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.447 -3.052 1.497 11.941
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.155 4.155
3 C -0.176 4.176
4 C -0.003 4.003
5 N -0.689 5.689
6 C -0.474 4.474
7 H 0.112 0.888
8 C -0.193 4.193
9 N -0.427 5.427
10 Si 0.757 3.243
11 H -0.199 1.199
12 H -0.196 1.196
13 H -0.190 1.190
14 S 2.701 3.299
15 O -0.960 6.960
16 O -1.037 7.037
17 C -0.635 4.635
18 C -0.054 4.054
19 C 0.079 3.921
20 O -0.241 6.241
21 C -0.084 4.084
22 C -0.181 4.181
23 C -0.065 4.065
24 C -0.018 4.018
25 C -0.074 4.074
26 N -0.084 5.084
27 H 0.065 0.935
28 H 0.077 0.923
29 H 0.091 0.909
30 H 0.092 0.908
31 H 0.074 0.926
32 H 0.052 0.948
33 H 0.082 0.918
34 H 0.092 0.908
35 H 0.090 0.910
36 H 0.096 0.904
37 H 0.154 0.846
38 H 0.089 0.911
39 H 0.138 0.862
40 H 0.096 0.904
41 H 0.205 0.795
42 H 0.195 0.805
Dipole moment (debyes) X Y Z Total
from point charges 10.111 -3.900 2.239 11.066
hybrid contribution 0.916 0.817 -0.783 1.456
sum 11.027 -3.083 1.456 11.543
Atomic orbital electron populations
1.21746 0.94464 1.02431 1.01744 1.21435 0.97006 0.94821 1.02245
1.22073 0.96467 0.98238 1.00865 1.21628 0.94029 0.82501 1.02141
1.53068 1.80636 1.17602 1.17597 1.18846 1.05622 1.31841 0.91073
0.88834 1.26257 0.96402 0.94816 1.01845 1.70753 1.25390 1.08912
1.37677 0.85861 0.78667 0.79493 0.80292 1.19873 1.19596 1.19038
1.06724 0.75043 0.73670 0.74443 1.93398 1.80002 1.37218 1.85377
1.93361 1.80050 1.69350 1.60937 1.30623 1.26923 0.97180 1.08758
1.19979 0.92219 0.96915 0.96302 1.19364 0.91268 0.86434 0.95037
1.86089 1.23417 1.27851 1.86697 1.23532 0.75708 1.06169 1.02942
1.21701 1.02387 0.90135 1.03834 1.21354 0.89995 1.00431 0.94716
1.15603 0.94193 0.84613 1.07394 1.25843 0.94508 0.93754 0.93254
1.80938 1.06061 1.11790 1.09648 0.93454 0.92341 0.90869 0.90786
0.92557 0.94776 0.91801 0.90785 0.91047 0.90396 0.84581 0.91060
0.86176 0.90387 0.79506 0.80523
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 45.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.93 9.91 71.98 0.71 -3.22 16
2 C -0.12 -3.78 5.93 30.59 0.18 -3.60 16
3 C -0.14 -5.61 5.51 30.60 0.17 -5.44 16
4 C 0.12 5.58 3.86 86.38 0.33 5.92 16
5 N -0.86 -43.46 2.54 -343.45 -0.87 -44.34 16
6 C -0.33 -17.19 9.01 84.03 0.76 -16.43 16
7 H 0.09 4.76 8.06 -2.91 -0.02 4.74 16
8 C 0.02 1.07 4.90 84.86 0.42 1.48 16
9 N -0.79 -40.13 6.62 21.65 0.14 -39.98 16
10 Si 0.93 38.03 29.70 68.60 2.04 40.07 16
11 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16
12 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16
13 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16
14 S 2.60 137.15 4.38 -56.49 -0.25 136.90 16
15 O -0.97 -57.19 14.24 -128.00 -1.82 -59.01 16
16 O -1.05 -57.81 15.93 -128.00 -2.04 -59.85 16
17 C -0.55 -24.31 4.66 22.52 0.10 -24.21 16
18 C -0.03 -1.39 7.32 22.32 0.16 -1.22 16
19 C 0.13 3.97 6.69 22.62 0.15 4.12 16
20 O -0.33 -8.86 10.49 -90.83 -0.95 -9.82 16
21 C 0.01 0.15 9.81 113.37 1.11 1.26 16
22 C -0.16 -3.86 9.01 22.33 0.20 -3.66 16
23 C -0.04 -1.19 9.75 22.52 0.22 -0.97 16
24 C -0.01 -0.50 5.74 -21.30 -0.12 -0.63 16
25 C 0.24 9.73 11.97 88.33 1.06 10.79 16
26 N -0.41 -16.78 15.44 19.01 0.29 -16.49 16
27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16
28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16
29 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16
30 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16
31 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16
32 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16
33 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16
34 H 0.07 3.18 8.08 -2.39 -0.02 3.16 16
35 H 0.07 3.32 3.89 -2.39 -0.01 3.31 16
36 H 0.28 13.36 8.22 -92.71 -0.76 12.60 16
37 H 0.14 6.17 6.93 -2.91 -0.02 6.15 16
38 H 0.07 0.83 7.65 -2.39 -0.02 0.81 16
39 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16
40 H 0.08 0.79 7.65 -2.38 -0.02 0.78 16
41 H 0.19 2.47 6.28 -2.91 -0.02 2.45 16
42 H 0.18 3.21 8.06 -2.91 -0.02 3.19 16
Total: -1.00 -70.69 354.68 3.05 -67.64
By element:
Atomic # 1 Polarization: 19.62 SS G_CDS: 1.05 Total: 20.68 kcal
Atomic # 6 Polarization: -41.26 SS G_CDS: 5.46 Total: -35.80 kcal
Atomic # 7 Polarization: -100.37 SS G_CDS: -0.43 Total: -100.80 kcal
Atomic # 8 Polarization: -123.86 SS G_CDS: -4.81 Total: -128.67 kcal
Atomic # 14 Polarization: 38.03 SS G_CDS: 2.04 Total: 40.07 kcal
Atomic # 16 Polarization: 137.15 SS G_CDS: -0.25 Total: 136.90 kcal
Total: -70.69 3.05 -67.64 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001193672097.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.076 kcal
(2) G-P(sol) polarization free energy of solvation -70.688 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.613 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.636 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.561 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.84 seconds