Wall clock time and date at job start Tue Mar 31 2020 21:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47233 * 2 1 4 4 N 1.46497 * 109.47189 * 179.97438 * 3 2 1 5 5 C 1.46506 * 120.00189 * 275.00384 * 4 3 2 6 6 C 1.50700 * 109.46909 * 274.99995 * 5 4 3 7 7 H 1.08002 * 120.00045 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99956 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99880 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00044 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46991 * 0.02562 * 10 8 6 12 12 H 1.48510 * 109.47112 * 119.99572 * 10 8 6 13 13 H 1.48493 * 109.47207 * 239.99823 * 10 8 6 14 14 S 1.65598 * 120.00282 * 95.00174 * 4 3 2 15 15 O 1.42091 * 104.27990 * 153.92827 * 14 4 3 16 16 O 1.42103 * 104.27476 * 26.06684 * 14 4 3 17 17 C 1.81405 * 104.44813 * 270.00156 * 14 4 3 18 18 C 1.50705 * 109.46736 * 179.97438 * 17 14 4 19 19 N 1.29740 * 126.29138 * 269.99331 * 18 17 14 20 20 O 1.41361 * 109.74059 * 180.02562 * 19 18 17 21 21 C 1.34820 * 109.32695 * 0.02562 * 20 19 18 22 22 C 1.38983 * 133.44621 * 179.97438 * 21 20 19 23 23 C 1.37794 * 119.79420 * 180.02562 * 22 21 20 24 24 C 1.38785 * 120.59884 * 0.02562 * 23 22 21 25 25 C 1.36622 * 120.51766 * 359.97438 * 24 23 22 26 26 C 1.39679 * 119.79071 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.47364 * 60.00027 * 1 2 3 28 28 H 1.08996 * 109.47202 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47266 * 300.00125 * 1 2 3 30 30 H 1.09000 * 109.47266 * 239.99875 * 2 1 3 31 31 H 1.09002 * 109.46801 * 120.00486 * 2 1 3 32 32 H 1.09004 * 109.46449 * 60.00092 * 3 2 1 33 33 H 1.08998 * 109.47171 * 299.99841 * 3 2 1 34 34 H 1.08996 * 109.46969 * 34.99790 * 5 4 3 35 35 H 1.08999 * 109.47259 * 154.99768 * 5 4 3 36 36 H 0.96998 * 119.99301 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.47263 * 60.00179 * 17 14 4 38 38 H 1.08996 * 109.46963 * 299.99311 * 17 14 4 39 39 H 1.08003 * 120.10178 * 359.97438 * 22 21 20 40 40 H 1.08005 * 119.70221 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.74182 * 179.72896 * 24 23 22 42 42 H 1.08005 * 120.10555 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.3320 1.2649 6 6 4.3807 2.6988 1.8832 7 1 3.9683 3.5633 1.3841 8 6 5.0385 2.8456 3.0860 9 7 5.5401 1.7928 3.6939 10 14 5.2172 4.5399 3.8521 11 1 4.5700 5.5498 2.9765 12 1 4.5648 4.5513 5.1861 13 1 6.6581 4.8654 4.0029 14 16 4.3336 1.5673 -1.4277 15 8 5.5799 2.1428 -1.0607 16 8 3.4379 2.2504 -2.2939 17 6 4.5601 -0.1486 -1.9710 18 6 5.3108 -0.1668 -3.2776 19 7 4.7877 -0.1307 -4.4643 20 8 5.8114 -0.1651 -5.4386 21 6 7.0101 -0.2251 -4.8244 22 6 8.3195 -0.2784 -5.2872 23 6 9.3618 -0.3351 -4.3877 24 6 9.1166 -0.3401 -3.0217 25 6 7.8368 -0.2884 -2.5464 26 6 6.7660 -0.2304 -3.4413 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.6767 1.9563 -0.8900 34 1 3.6893 0.6808 1.9461 35 1 5.2253 0.9125 1.0770 36 1 6.0026 1.8961 4.5403 37 1 3.5859 -0.6187 -2.1055 38 1 5.1271 -0.6962 -1.2182 39 1 8.5194 -0.2762 -6.3486 40 1 10.3788 -0.3769 -4.7490 41 1 9.9438 -0.3893 -2.3291 42 1 7.6536 -0.2931 -1.4820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194076695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:25 Heat of formation + Delta-G solvation = -8.032838 kcal Electronic energy + Delta-G solvation = -27511.990100 eV Core-core repulsion = 23587.077672 eV Total energy + Delta-G solvation = -3924.912428 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.96137 -37.91752 -36.81374 -36.48277 -35.47312 -34.96206 -33.22708 -31.87998 -30.85346 -30.29181 -29.29286 -27.47608 -25.13755 -23.50249 -22.89102 -22.63169 -21.44690 -20.61004 -18.40559 -17.78217 -17.46531 -17.26511 -16.50578 -16.26842 -15.89635 -15.70434 -15.58554 -14.69314 -14.52826 -14.34777 -14.18694 -13.84680 -13.69614 -13.42238 -13.07160 -12.53078 -12.48911 -12.42019 -12.24426 -11.96608 -11.92137 -11.73963 -11.61144 -11.56016 -11.41297 -11.32520 -11.22602 -11.04558 -10.83034 -10.60924 -10.40253 -10.35847 -10.01054 -9.77015 -9.17672 -8.80264 -8.49765 -8.17510 -6.11948 -4.14979 0.23023 0.60201 1.08515 1.83866 2.24613 3.09932 3.28569 3.36573 3.40409 3.42787 3.62913 3.91051 4.24304 4.31121 4.41124 4.52237 4.71519 4.76568 4.96753 4.99993 5.13071 5.17529 5.23685 5.25845 5.27061 5.41304 5.52304 5.64737 5.66646 5.87612 5.94943 6.02582 6.03172 6.11001 6.17031 6.22941 6.40981 6.52641 6.55193 6.99538 7.08499 7.26268 7.47431 7.86326 8.13534 8.87851 9.50415 10.96814 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011185 B = 0.004241 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.686984 B = 6600.387957 C = 8335.264292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.149 4.149 3 C 0.116 3.884 4 N -0.974 5.974 5 C 0.253 3.747 6 C -0.524 4.524 7 H 0.062 0.938 8 C 0.063 3.937 9 N -0.897 5.897 10 Si 0.896 3.104 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.282 1.282 14 S 2.606 3.394 15 O -0.918 6.918 16 O -0.954 6.954 17 C -0.586 4.586 18 C 0.141 3.859 19 N -0.270 5.270 20 O -0.086 6.086 21 C 0.084 3.916 22 C -0.130 4.130 23 C -0.057 4.057 24 C -0.148 4.148 25 C -0.027 4.027 26 C -0.195 4.195 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.263 0.737 37 H 0.153 0.847 38 H 0.160 0.840 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.135 -8.701 -11.761 14.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.189 4.189 3 C -0.010 4.010 4 N -0.814 5.814 5 C 0.131 3.869 6 C -0.564 4.564 7 H 0.081 0.919 8 C -0.139 4.139 9 N -0.536 5.536 10 Si 0.724 3.276 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.208 1.208 14 S 2.691 3.309 15 O -0.908 6.908 16 O -0.944 6.944 17 C -0.708 4.708 18 C -0.041 4.041 19 N -0.014 5.014 20 O -0.097 6.097 21 C 0.030 3.970 22 C -0.149 4.149 23 C -0.077 4.077 24 C -0.166 4.166 25 C -0.047 4.047 26 C -0.199 4.199 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.171 0.829 38 H 0.178 0.822 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.429 -7.957 -12.842 15.175 hybrid contribution 0.652 -0.054 1.104 1.283 sum 2.081 -8.012 -11.738 14.363 Atomic orbital electron populations 1.21689 0.95387 1.01482 1.02136 1.22082 0.96243 0.98391 1.02146 1.21376 0.79442 0.95858 1.04363 1.57518 1.14094 1.87722 1.22072 1.19173 0.90956 0.98129 0.78616 1.21488 1.35994 0.93564 1.05313 0.91932 1.24908 0.95084 0.97100 0.96840 1.69919 1.37543 1.28953 1.17201 0.86466 0.78030 0.84224 0.78909 1.19588 1.20966 1.20789 1.05497 0.75166 0.76121 0.74135 1.93652 1.44116 1.71786 1.81234 1.93553 1.64872 1.68584 1.67371 1.29945 1.08771 1.33246 0.98856 1.23337 0.91900 0.95012 0.93823 1.79954 1.05799 1.18555 0.97066 1.89154 1.11132 1.81034 1.28413 1.20312 0.88886 0.96711 0.91111 1.20042 0.86950 1.06763 1.01192 1.21201 0.98770 0.94842 0.92852 1.20877 0.96748 1.03157 0.95803 1.20668 0.90871 0.92994 1.00177 1.20635 0.92071 1.13193 0.94025 0.92645 0.92873 0.92246 0.92980 0.90799 0.88999 0.89997 0.94204 0.94351 0.92724 0.82853 0.82216 0.84201 0.84080 0.84286 0.83928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.15 -1.97 6.26 -26.73 -0.17 -2.14 16 3 C 0.12 1.91 5.66 -4.04 -0.02 1.88 16 4 N -0.97 -18.87 2.70 -115.66 -0.31 -19.18 16 5 C 0.25 5.85 5.01 -5.19 -0.03 5.82 16 6 C -0.52 -14.07 9.38 -34.44 -0.32 -14.39 16 7 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.90 -24.98 13.29 55.43 0.74 -24.25 16 10 Si 0.90 21.27 29.54 -169.99 -5.02 16.24 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 S 2.61 49.96 5.35 -107.50 -0.58 49.38 16 15 O -0.92 -20.77 16.99 -57.54 -0.98 -21.74 16 16 O -0.95 -19.97 16.53 -57.54 -0.95 -20.92 16 17 C -0.59 -8.48 6.78 36.01 0.24 -8.24 16 18 C 0.14 2.27 6.72 -80.12 -0.54 1.73 16 19 N -0.27 -4.66 12.81 34.91 0.45 -4.21 16 20 O -0.09 -1.38 12.06 7.68 0.09 -1.29 16 21 C 0.08 1.20 7.48 -38.47 -0.29 0.91 16 22 C -0.13 -1.37 10.07 -39.47 -0.40 -1.77 16 23 C -0.06 -0.51 10.02 -39.54 -0.40 -0.91 16 24 C -0.15 -1.51 9.97 -39.96 -0.40 -1.90 16 25 C -0.03 -0.35 10.05 -39.63 -0.40 -0.75 16 26 C -0.20 -2.95 6.32 -105.17 -0.67 -3.61 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.61 6.96 -51.93 -0.36 0.25 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 33 H 0.08 1.31 6.82 -51.93 -0.35 0.96 16 34 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 35 H 0.04 0.92 7.61 -51.93 -0.40 0.52 16 36 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.15 1.82 6.96 -51.92 -0.36 1.46 16 38 H 0.16 1.88 8.14 -51.93 -0.42 1.46 16 39 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 40 H 0.14 0.75 8.06 -52.48 -0.42 0.32 16 41 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 42 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -33.96 373.31 -9.71 -43.66 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.66 Total: -0.28 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -3.11 Total: -23.03 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.87 Total: -47.64 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -1.84 Total: -43.96 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 49.96 SS G_CDS: -0.58 Total: 49.38 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.96 -9.71 -43.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194076695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.629 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds