Wall clock time and date at job start Tue Mar 31 2020 21:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47233 * 2 1 4 4 N 1.46497 * 109.47189 * 179.97438 * 3 2 1 5 5 C 1.46506 * 120.00189 * 275.00384 * 4 3 2 6 6 C 1.50700 * 109.46909 * 274.99995 * 5 4 3 7 7 H 1.08002 * 120.00045 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99956 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99880 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00044 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46991 * 0.02562 * 10 8 6 12 12 H 1.48510 * 109.47112 * 119.99572 * 10 8 6 13 13 H 1.48493 * 109.47207 * 239.99823 * 10 8 6 14 14 S 1.65598 * 120.00282 * 95.00174 * 4 3 2 15 15 O 1.42091 * 104.27990 * 153.92827 * 14 4 3 16 16 O 1.42103 * 104.27476 * 26.06684 * 14 4 3 17 17 C 1.81405 * 104.44813 * 270.00156 * 14 4 3 18 18 C 1.50705 * 109.46736 * 179.97438 * 17 14 4 19 19 N 1.29740 * 126.29138 * 269.99331 * 18 17 14 20 20 O 1.41361 * 109.74059 * 180.02562 * 19 18 17 21 21 C 1.34820 * 109.32695 * 0.02562 * 20 19 18 22 22 C 1.38983 * 133.44621 * 179.97438 * 21 20 19 23 23 C 1.37794 * 119.79420 * 180.02562 * 22 21 20 24 24 C 1.38785 * 120.59884 * 0.02562 * 23 22 21 25 25 C 1.36622 * 120.51766 * 359.97438 * 24 23 22 26 26 C 1.39679 * 119.79071 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.47364 * 60.00027 * 1 2 3 28 28 H 1.08996 * 109.47202 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47266 * 300.00125 * 1 2 3 30 30 H 1.09000 * 109.47266 * 239.99875 * 2 1 3 31 31 H 1.09002 * 109.46801 * 120.00486 * 2 1 3 32 32 H 1.09004 * 109.46449 * 60.00092 * 3 2 1 33 33 H 1.08998 * 109.47171 * 299.99841 * 3 2 1 34 34 H 1.08996 * 109.46969 * 34.99790 * 5 4 3 35 35 H 1.08999 * 109.47259 * 154.99768 * 5 4 3 36 36 H 0.96998 * 119.99301 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.47263 * 60.00179 * 17 14 4 38 38 H 1.08996 * 109.46963 * 299.99311 * 17 14 4 39 39 H 1.08003 * 120.10178 * 359.97438 * 22 21 20 40 40 H 1.08005 * 119.70221 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.74182 * 179.72896 * 24 23 22 42 42 H 1.08005 * 120.10555 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.3320 1.2649 6 6 4.3807 2.6988 1.8832 7 1 3.9683 3.5633 1.3841 8 6 5.0385 2.8456 3.0860 9 7 5.5401 1.7928 3.6939 10 14 5.2172 4.5399 3.8521 11 1 4.5700 5.5498 2.9765 12 1 4.5648 4.5513 5.1861 13 1 6.6581 4.8654 4.0029 14 16 4.3336 1.5673 -1.4277 15 8 5.5799 2.1428 -1.0607 16 8 3.4379 2.2504 -2.2939 17 6 4.5601 -0.1486 -1.9710 18 6 5.3108 -0.1668 -3.2776 19 7 4.7877 -0.1307 -4.4643 20 8 5.8114 -0.1651 -5.4386 21 6 7.0101 -0.2251 -4.8244 22 6 8.3195 -0.2784 -5.2872 23 6 9.3618 -0.3351 -4.3877 24 6 9.1166 -0.3401 -3.0217 25 6 7.8368 -0.2884 -2.5464 26 6 6.7660 -0.2304 -3.4413 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.6767 1.9563 -0.8900 34 1 3.6893 0.6808 1.9461 35 1 5.2253 0.9125 1.0770 36 1 6.0026 1.8961 4.5403 37 1 3.5859 -0.6187 -2.1055 38 1 5.1271 -0.6962 -1.2182 39 1 8.5194 -0.2762 -6.3486 40 1 10.3788 -0.3769 -4.7490 41 1 9.9438 -0.3893 -2.3291 42 1 7.6536 -0.2931 -1.4820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194076695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:24 Heat of formation + Delta-G solvation = -30.527422 kcal Electronic energy + Delta-G solvation = -27512.965538 eV Core-core repulsion = 23587.077672 eV Total energy + Delta-G solvation = -3925.887867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.02717 -38.82905 -38.38685 -38.00471 -37.09747 -36.12055 -34.97309 -33.39975 -31.74864 -31.27123 -30.49708 -29.23007 -26.58374 -24.47899 -24.36756 -23.84927 -22.60929 -21.77065 -19.94332 -18.88366 -18.76949 -18.62395 -18.26001 -17.60887 -17.43641 -16.97307 -16.55721 -16.44302 -15.73702 -15.43521 -15.36911 -15.02600 -14.87087 -14.77295 -14.23286 -14.21385 -13.82399 -13.43862 -13.39273 -13.30651 -13.23060 -13.21275 -13.13782 -13.02642 -12.83036 -12.67881 -12.49654 -12.37716 -12.20012 -12.15718 -12.07464 -11.70349 -11.63846 -11.41675 -10.56167 -10.11243 -9.83462 -9.70659 -8.18514 -6.27744 -1.15563 -0.50081 0.16582 0.76418 1.13292 1.39255 1.42269 1.52753 1.64740 2.42756 2.44564 2.53237 2.79194 2.82597 3.10893 3.14815 3.40762 3.65613 3.77759 3.90496 4.00363 4.15114 4.17028 4.19613 4.31686 4.36081 4.49349 4.57438 4.82861 4.83856 4.89519 4.98206 5.04170 5.17576 5.22093 5.26418 5.29328 5.34271 5.46281 5.52342 5.55266 5.71745 5.89493 5.94664 6.14054 6.79031 7.40249 8.89099 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011185 B = 0.004241 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.686984 B = 6600.387957 C = 8335.264292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.108 3.892 4 N -0.980 5.980 5 C 0.267 3.733 6 C -0.544 4.544 7 H 0.046 0.954 8 C 0.019 3.981 9 N -0.920 5.920 10 Si 0.948 3.052 11 H -0.275 1.275 12 H -0.271 1.271 13 H -0.278 1.278 14 S 2.607 3.393 15 O -0.964 6.964 16 O -0.980 6.980 17 C -0.561 4.561 18 C 0.127 3.873 19 N -0.298 5.298 20 O -0.097 6.097 21 C 0.057 3.943 22 C -0.129 4.129 23 C -0.040 4.040 24 C -0.141 4.141 25 C -0.053 4.053 26 C -0.223 4.223 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.039 0.961 35 H 0.029 0.971 36 H 0.267 0.733 37 H 0.183 0.817 38 H 0.188 0.812 39 H 0.170 0.830 40 H 0.189 0.811 41 H 0.169 0.831 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.526 -9.893 -12.373 16.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C -0.017 4.017 4 N -0.818 5.818 5 C 0.144 3.856 6 C -0.584 4.584 7 H 0.065 0.935 8 C -0.181 4.181 9 N -0.560 5.560 10 Si 0.774 3.226 11 H -0.200 1.200 12 H -0.196 1.196 13 H -0.204 1.204 14 S 2.699 3.301 15 O -0.954 6.954 16 O -0.971 6.971 17 C -0.688 4.688 18 C -0.053 4.053 19 N -0.042 5.042 20 O -0.110 6.110 21 C 0.004 3.996 22 C -0.148 4.148 23 C -0.059 4.059 24 C -0.159 4.159 25 C -0.073 4.073 26 C -0.227 4.227 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.201 0.799 38 H 0.206 0.794 39 H 0.187 0.813 40 H 0.206 0.794 41 H 0.187 0.813 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.786 -9.097 -13.426 16.455 hybrid contribution 0.352 0.267 1.185 1.265 sum 3.138 -8.830 -12.241 15.416 Atomic orbital electron populations 1.21693 0.93633 1.02802 1.02394 1.22052 0.97720 0.95839 1.02857 1.21583 0.77857 0.98382 1.03867 1.57307 1.15143 1.88573 1.20825 1.18788 0.90887 0.96141 0.79830 1.21802 1.35994 0.94778 1.05779 0.93528 1.25586 0.94943 1.00231 0.97351 1.69979 1.38047 1.30350 1.17625 0.85660 0.78056 0.80435 0.78487 1.20000 1.19582 1.20399 1.04996 0.73934 0.77541 0.73658 1.93592 1.45585 1.74349 1.81828 1.93514 1.65222 1.70728 1.67587 1.29637 1.11102 1.28913 0.99172 1.23559 0.93009 0.95004 0.93759 1.79853 1.07054 1.19634 0.97674 1.89078 1.11912 1.81596 1.28408 1.20884 0.89491 0.98230 0.91005 1.20600 0.85533 1.05399 1.03249 1.21788 1.00444 0.91779 0.91893 1.21362 0.96320 1.00888 0.97290 1.20908 0.91763 0.94550 1.00107 1.20843 0.91918 1.14883 0.95028 0.92137 0.90988 0.92348 0.91268 0.91089 0.90149 0.89868 0.94289 0.95283 0.92369 0.79913 0.79427 0.81284 0.79366 0.81325 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.91 71.98 0.71 -2.33 16 2 C -0.15 -3.68 6.26 30.59 0.19 -3.49 16 3 C 0.11 3.61 5.66 86.38 0.49 4.09 16 4 N -0.98 -38.69 2.70 -519.84 -1.40 -40.09 16 5 C 0.27 12.61 5.01 85.63 0.43 13.04 16 6 C -0.54 -29.93 9.38 25.60 0.24 -29.69 16 7 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 8 C 0.02 1.02 5.46 84.65 0.46 1.49 16 9 N -0.92 -51.53 13.29 21.45 0.28 -51.25 16 10 Si 0.95 43.85 29.54 68.60 2.03 45.87 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 S 2.61 102.29 5.35 -56.49 -0.30 101.99 16 15 O -0.96 -45.28 16.99 -127.65 -2.17 -47.44 16 16 O -0.98 -42.25 16.53 -127.65 -2.11 -44.36 16 17 C -0.56 -15.94 6.78 71.24 0.48 -15.46 16 18 C 0.13 4.13 6.72 45.04 0.30 4.43 16 19 N -0.30 -10.42 12.81 -43.47 -0.56 -10.98 16 20 O -0.10 -3.17 12.06 29.86 0.36 -2.81 16 21 C 0.06 1.60 7.48 22.99 0.17 1.77 16 22 C -0.13 -2.37 10.07 22.34 0.23 -2.14 16 23 C -0.04 -0.55 10.02 22.30 0.22 -0.33 16 24 C -0.14 -2.46 9.97 22.02 0.22 -2.24 16 25 C -0.05 -1.34 10.05 22.24 0.22 -1.12 16 26 C -0.22 -6.67 6.32 -20.22 -0.13 -6.80 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.49 6.96 -2.39 -0.02 1.48 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.08 2.81 8.11 -2.38 -0.02 2.79 16 33 H 0.08 2.72 6.82 -2.39 -0.02 2.70 16 34 H 0.04 1.84 8.11 -2.39 -0.02 1.82 16 35 H 0.03 1.42 7.61 -2.39 -0.02 1.41 16 36 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 37 H 0.18 4.05 6.96 -2.39 -0.02 4.04 16 38 H 0.19 4.24 8.14 -2.39 -0.02 4.22 16 39 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 40 H 0.19 0.83 8.06 -2.91 -0.02 0.81 16 41 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 42 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -76.55 373.31 1.41 -75.14 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 1.03 Total: 12.70 kcal Atomic # 6 Polarization: -43.01 SS G_CDS: 4.25 Total: -38.77 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -1.67 Total: -102.31 kcal Atomic # 8 Polarization: -90.70 SS G_CDS: -3.92 Total: -94.62 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 102.29 SS G_CDS: -0.30 Total: 101.99 kcal Total: -76.55 1.41 -75.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194076695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.616 kcal (2) G-P(sol) polarization free energy of solvation -76.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds