Wall clock time and date at job start Tue Mar 31 2020 20:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34174 * 127.02781 * 2 1 4 4 O 1.34207 * 109.12998 * 179.83502 * 3 2 1 5 5 C 1.33657 * 110.90709 * 0.45025 * 4 3 2 6 6 C 1.36412 * 108.39349 * 359.72734 * 5 4 3 7 7 C 1.47379 * 127.19104 * 180.02562 * 6 5 4 8 8 O 1.21615 * 120.00231 * 223.40352 * 7 6 5 9 9 N 1.34778 * 119.99984 * 43.40304 * 7 6 5 10 10 C 1.46967 * 120.59214 * 5.25650 * 9 7 6 11 11 C 1.53812 * 108.39856 * 124.75842 * 10 9 7 12 12 N 1.46965 * 108.57931 * 49.63654 * 11 10 9 13 13 C 1.34775 * 120.59225 * 124.62826 * 12 11 10 14 14 O 1.21286 * 119.99836 * 180.02562 * 13 12 11 15 15 C 1.50705 * 120.00208 * 0.02562 * 13 12 11 16 16 S 1.80999 * 109.47035 * 180.02562 * 15 13 12 17 17 C 1.76201 * 99.99674 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00131 * 359.97438 * 17 16 15 19 19 C 1.38804 * 119.99812 * 180.02562 * 17 16 15 20 20 N 1.31630 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00075 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47151 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47265 * 119.99731 * 21 19 17 24 24 H 1.48504 * 109.47017 * 239.99776 * 21 19 17 25 25 C 1.46963 * 118.81368 * 304.64743 * 12 11 10 26 26 C 1.46968 * 120.59873 * 185.53420 * 9 7 6 27 27 H 1.09004 * 109.46959 * 269.68421 * 1 2 3 28 28 H 1.08997 * 109.47416 * 149.69065 * 1 2 3 29 29 H 1.08993 * 109.47227 * 29.68443 * 1 2 3 30 30 H 1.08007 * 125.43393 * 359.97438 * 3 2 1 31 31 H 1.07994 * 125.80319 * 179.73051 * 5 4 3 32 32 H 1.09001 * 109.61320 * 244.53775 * 10 9 7 33 33 H 1.09002 * 109.61045 * 5.05328 * 10 9 7 34 34 H 1.08998 * 109.74098 * 289.84855 * 11 10 9 35 35 H 1.09000 * 109.53794 * 169.30223 * 11 10 9 36 36 H 1.08997 * 109.46752 * 300.00212 * 15 13 12 37 37 H 1.08993 * 109.47007 * 60.00374 * 15 13 12 38 38 H 0.96998 * 120.00376 * 180.02562 * 20 19 17 39 39 H 1.08999 * 109.60616 * 295.48230 * 25 12 11 40 40 H 1.09001 * 109.75369 * 175.05122 * 25 12 11 41 41 H 1.09000 * 109.60411 * 354.95329 * 26 9 7 42 42 H 1.08998 * 109.60977 * 115.45913 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0712 0.0000 4 8 3.5921 0.6587 0.0037 5 6 3.6623 -0.6760 -0.0037 6 6 2.3923 -1.1738 -0.0064 7 6 1.9913 -2.5920 -0.0136 8 8 1.0896 -2.9653 -0.7393 9 7 2.6239 -3.4752 0.7840 10 6 3.6355 -3.0210 1.7486 11 6 3.2308 -3.5181 3.1467 12 7 2.9258 -4.9534 3.0633 13 6 3.5591 -5.8366 3.8603 14 8 3.2993 -7.0188 3.7820 15 6 4.5899 -5.3555 4.8488 16 16 5.2550 -6.7689 5.7631 17 6 6.4003 -5.9410 6.8154 18 1 6.5098 -4.8683 6.7564 19 6 7.1625 -6.6678 7.7196 20 7 7.0295 -7.9754 7.7912 21 14 8.3772 -5.7902 8.8348 22 1 8.3374 -4.3315 8.5594 23 1 8.0141 -6.0367 10.2535 24 1 9.7463 -6.3049 8.5776 25 6 1.9183 -5.4083 2.0948 26 6 2.3189 -4.9105 0.7006 27 1 -0.3633 -0.0057 1.0277 28 1 -0.3634 -0.8872 -0.5186 29 1 -0.3633 0.8927 -0.5089 30 1 1.9895 2.1010 -0.0004 31 1 4.5701 -1.2609 -0.0069 32 1 4.6085 -3.4315 1.4789 33 1 3.6814 -1.9319 1.7450 34 1 2.3494 -2.9762 3.4894 35 1 4.0545 -3.3591 3.8427 36 1 5.3983 -4.8549 4.3160 37 1 4.1267 -4.6570 5.5456 38 1 7.5619 -8.4832 8.4232 39 1 0.9435 -5.0008 2.3626 40 1 1.8723 -6.4973 2.0952 41 1 1.4952 -5.0695 0.0047 42 1 3.2004 -5.4524 0.3580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282852977.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:20 Heat of formation + Delta-G solvation = -39.830312 kcal Electronic energy + Delta-G solvation = -26576.740573 eV Core-core repulsion = 22650.449303 eV Total energy + Delta-G solvation = -3926.291270 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.99358 -40.50253 -39.18095 -36.96366 -34.33051 -34.11046 -32.47407 -32.33345 -30.72284 -29.47207 -27.67277 -27.50928 -25.54629 -24.31165 -23.98461 -22.05919 -21.08665 -20.14431 -18.96679 -18.07269 -17.41751 -17.00618 -16.64066 -16.26521 -16.08310 -15.77162 -15.55891 -15.40360 -14.92435 -14.84697 -14.06042 -14.03523 -13.89694 -13.75198 -13.46932 -13.33498 -13.18714 -12.84919 -12.78739 -12.51908 -11.99427 -11.91495 -11.84471 -11.78907 -11.53059 -11.10842 -11.06477 -10.79258 -10.33140 -9.84982 -9.83635 -9.50254 -9.39559 -9.11746 -9.06195 -8.45554 -8.27899 -6.55665 -6.26178 -3.97337 1.05327 1.66641 2.36767 2.57178 2.70722 2.94732 2.96328 3.18290 3.22527 3.27646 3.51308 4.03808 4.15289 4.18718 4.45059 4.47649 4.54464 4.77770 4.84284 4.88029 4.99099 5.03507 5.08804 5.10206 5.21728 5.31597 5.32402 5.45798 5.49091 5.52704 5.52943 5.61582 5.66424 5.73190 5.79734 6.01995 6.03165 6.13424 6.45591 6.57263 6.98907 7.41671 7.55233 7.81760 8.30570 8.44251 9.19247 10.81254 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016837 B = 0.002516 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.585344 B =11127.864944 C =12387.759058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.138 4.138 3 C -0.041 4.041 4 O -0.171 6.171 5 C 0.016 3.984 6 C -0.229 4.229 7 C 0.591 3.409 8 O -0.532 6.532 9 N -0.607 5.607 10 C 0.083 3.917 11 C 0.096 3.904 12 N -0.622 5.622 13 C 0.536 3.464 14 O -0.513 6.513 15 C -0.152 4.152 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.101 3.899 26 C 0.100 3.900 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.208 0.792 31 H 0.213 0.787 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.268 0.732 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.285 18.957 -15.989 26.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C -0.107 4.107 4 O -0.066 6.066 5 C -0.054 4.054 6 C -0.233 4.233 7 C 0.380 3.620 8 O -0.410 6.410 9 N -0.340 5.340 10 C -0.041 4.041 11 C -0.028 4.028 12 N -0.359 5.359 13 C 0.324 3.676 14 O -0.386 6.386 15 C -0.302 4.302 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.023 4.023 26 C -0.023 4.023 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.224 0.776 31 H 0.229 0.771 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.867 16.998 -16.396 25.595 hybrid contribution 1.088 1.894 0.889 2.358 sum -8.780 18.892 -15.507 25.970 Atomic orbital electron populations 1.20247 0.88446 1.03514 1.02489 1.21382 0.97154 0.90288 1.05201 1.23739 0.79669 0.99725 1.07569 1.83808 1.29577 1.22258 1.70919 1.24458 0.98649 0.81012 1.01233 1.21319 0.93710 0.94118 1.14167 1.17345 0.81284 0.83867 0.79488 1.90780 1.29589 1.79353 1.41234 1.47953 1.40743 1.07494 1.37856 1.22523 0.91771 1.01098 0.88688 1.22152 1.02503 0.81483 0.96696 1.48062 1.41661 1.06939 1.39200 1.20392 0.81095 0.85722 0.80410 1.90704 1.63864 1.16209 1.67845 1.23557 0.99476 1.06928 1.00235 1.85455 1.49121 1.05284 1.43499 1.22882 1.25749 0.95765 1.23925 0.90870 1.25001 0.96938 0.94924 0.96742 1.70022 1.39341 1.05500 1.35340 0.86114 0.80119 0.79410 0.79827 1.19600 1.20552 1.20559 1.21895 0.91133 1.02261 0.87018 1.22083 1.02851 0.79273 0.98088 0.91198 0.90255 0.91265 0.77552 0.77076 0.90091 0.88269 0.90864 0.87816 0.89210 0.89195 0.92188 0.91301 0.87482 0.87729 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 10.38 36.00 0.37 -0.31 16 2 C -0.14 -1.19 6.38 -102.50 -0.65 -1.84 16 3 C -0.04 -0.27 11.96 29.30 0.35 0.08 16 4 O -0.17 -1.27 10.52 7.66 0.08 -1.19 16 5 C 0.02 0.12 9.78 30.07 0.29 0.41 16 6 C -0.23 -2.17 5.32 -103.28 -0.55 -2.72 16 7 C 0.59 6.78 7.56 -12.54 -0.09 6.69 16 8 O -0.53 -7.81 15.79 5.26 0.08 -7.73 16 9 N -0.61 -6.08 2.94 -173.50 -0.51 -6.59 16 10 C 0.08 0.66 5.85 -3.36 -0.02 0.64 16 11 C 0.10 0.94 6.52 -3.37 -0.02 0.92 16 12 N -0.62 -8.26 2.95 -172.22 -0.51 -8.77 16 13 C 0.54 9.63 7.72 -10.98 -0.08 9.55 16 14 O -0.51 -11.24 15.27 5.55 0.08 -11.16 16 15 C -0.15 -2.89 4.50 36.01 0.16 -2.73 16 16 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 17 C -0.53 -14.78 9.50 30.94 0.29 -14.48 16 18 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 19 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 20 N -0.87 -25.69 13.22 55.49 0.73 -24.96 16 21 Si 0.92 20.89 29.55 -169.99 -5.02 15.87 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 C 0.10 1.19 6.59 -3.60 -0.02 1.17 16 26 C 0.10 1.05 6.60 -3.60 -0.02 1.03 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.77 7.40 -51.93 -0.38 0.38 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.21 0.62 8.06 -52.48 -0.42 0.20 16 31 H 0.21 0.88 7.54 -52.49 -0.40 0.48 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.62 4.86 -51.93 -0.25 0.37 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.96 5.91 -51.93 -0.31 0.65 16 36 H 0.09 1.54 7.72 -51.92 -0.40 1.14 16 37 H 0.09 1.59 7.91 -51.92 -0.41 1.18 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.11 1.40 7.00 -51.93 -0.36 1.04 16 41 H 0.10 1.12 6.99 -51.93 -0.36 0.76 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 364.64 15.07 5.50 5.50 Total: -1.00 -36.65 364.64 -7.25 -43.90 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.38 Total: -1.41 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -0.09 Total: 0.34 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: -0.28 Total: -40.32 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: 0.25 Total: -20.08 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.65 -7.25 -43.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282852977.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.074 kcal (2) G-P(sol) polarization free energy of solvation -36.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds