Wall clock time and date at job start Tue Mar 31 2020 20:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34174 * 127.02781 * 2 1 4 4 O 1.34207 * 109.12998 * 179.83502 * 3 2 1 5 5 C 1.33657 * 110.90709 * 0.45025 * 4 3 2 6 6 C 1.36412 * 108.39349 * 359.72734 * 5 4 3 7 7 C 1.47379 * 127.19104 * 180.02562 * 6 5 4 8 8 O 1.21615 * 120.00231 * 223.40352 * 7 6 5 9 9 N 1.34778 * 119.99984 * 43.40304 * 7 6 5 10 10 C 1.46967 * 120.59214 * 5.25650 * 9 7 6 11 11 C 1.53812 * 108.39856 * 124.75842 * 10 9 7 12 12 N 1.46965 * 108.57931 * 49.63654 * 11 10 9 13 13 C 1.34775 * 120.59225 * 124.62826 * 12 11 10 14 14 O 1.21286 * 119.99836 * 180.02562 * 13 12 11 15 15 C 1.50705 * 120.00208 * 0.02562 * 13 12 11 16 16 S 1.80999 * 109.47035 * 180.02562 * 15 13 12 17 17 C 1.76201 * 99.99674 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00131 * 359.97438 * 17 16 15 19 19 C 1.38804 * 119.99812 * 180.02562 * 17 16 15 20 20 N 1.31630 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00075 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47151 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47265 * 119.99731 * 21 19 17 24 24 H 1.48504 * 109.47017 * 239.99776 * 21 19 17 25 25 C 1.46963 * 118.81368 * 304.64743 * 12 11 10 26 26 C 1.46968 * 120.59873 * 185.53420 * 9 7 6 27 27 H 1.09004 * 109.46959 * 269.68421 * 1 2 3 28 28 H 1.08997 * 109.47416 * 149.69065 * 1 2 3 29 29 H 1.08993 * 109.47227 * 29.68443 * 1 2 3 30 30 H 1.08007 * 125.43393 * 359.97438 * 3 2 1 31 31 H 1.07994 * 125.80319 * 179.73051 * 5 4 3 32 32 H 1.09001 * 109.61320 * 244.53775 * 10 9 7 33 33 H 1.09002 * 109.61045 * 5.05328 * 10 9 7 34 34 H 1.08998 * 109.74098 * 289.84855 * 11 10 9 35 35 H 1.09000 * 109.53794 * 169.30223 * 11 10 9 36 36 H 1.08997 * 109.46752 * 300.00212 * 15 13 12 37 37 H 1.08993 * 109.47007 * 60.00374 * 15 13 12 38 38 H 0.96998 * 120.00376 * 180.02562 * 20 19 17 39 39 H 1.08999 * 109.60616 * 295.48230 * 25 12 11 40 40 H 1.09001 * 109.75369 * 175.05122 * 25 12 11 41 41 H 1.09000 * 109.60411 * 354.95329 * 26 9 7 42 42 H 1.08998 * 109.60977 * 115.45913 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0712 0.0000 4 8 3.5921 0.6587 0.0037 5 6 3.6623 -0.6760 -0.0037 6 6 2.3923 -1.1738 -0.0064 7 6 1.9913 -2.5920 -0.0136 8 8 1.0896 -2.9653 -0.7393 9 7 2.6239 -3.4752 0.7840 10 6 3.6355 -3.0210 1.7486 11 6 3.2308 -3.5181 3.1467 12 7 2.9258 -4.9534 3.0633 13 6 3.5591 -5.8366 3.8603 14 8 3.2993 -7.0188 3.7820 15 6 4.5899 -5.3555 4.8488 16 16 5.2550 -6.7689 5.7631 17 6 6.4003 -5.9410 6.8154 18 1 6.5098 -4.8683 6.7564 19 6 7.1625 -6.6678 7.7196 20 7 7.0295 -7.9754 7.7912 21 14 8.3772 -5.7902 8.8348 22 1 8.3374 -4.3315 8.5594 23 1 8.0141 -6.0367 10.2535 24 1 9.7463 -6.3049 8.5776 25 6 1.9183 -5.4083 2.0948 26 6 2.3189 -4.9105 0.7006 27 1 -0.3633 -0.0057 1.0277 28 1 -0.3634 -0.8872 -0.5186 29 1 -0.3633 0.8927 -0.5089 30 1 1.9895 2.1010 -0.0004 31 1 4.5701 -1.2609 -0.0069 32 1 4.6085 -3.4315 1.4789 33 1 3.6814 -1.9319 1.7450 34 1 2.3494 -2.9762 3.4894 35 1 4.0545 -3.3591 3.8427 36 1 5.3983 -4.8549 4.3160 37 1 4.1267 -4.6570 5.5456 38 1 7.5619 -8.4832 8.4232 39 1 0.9435 -5.0008 2.3626 40 1 1.8723 -6.4973 2.0952 41 1 1.4952 -5.0695 0.0047 42 1 3.2004 -5.4524 0.3580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282852977.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:20 Heat of formation + Delta-G solvation = -64.748891 kcal Electronic energy + Delta-G solvation = -26577.821124 eV Core-core repulsion = 22650.449303 eV Total energy + Delta-G solvation = -3927.371821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.55065 -41.50717 -40.33764 -38.06496 -35.27353 -34.84427 -34.56324 -33.22045 -31.41065 -30.80738 -28.61350 -28.13667 -27.62893 -25.19719 -24.81639 -22.95624 -21.68168 -21.06220 -20.08668 -19.50105 -18.58659 -17.99761 -17.46112 -17.14813 -16.92593 -16.86412 -16.82276 -16.69762 -16.29918 -15.80838 -15.52215 -15.00764 -14.81502 -14.63242 -14.55210 -14.47766 -14.04265 -13.95821 -13.53686 -13.45720 -13.40104 -13.14760 -12.90538 -12.73288 -12.65998 -12.60398 -12.50135 -12.40347 -11.67991 -11.21517 -11.14313 -10.94275 -10.49055 -10.42353 -10.22933 -9.60953 -9.45043 -8.65504 -8.32935 -6.10928 0.44983 1.08733 1.23925 1.43360 1.44577 1.52559 1.56811 1.67007 1.94449 2.05386 2.21220 2.28722 3.01838 3.23537 3.37512 3.60261 3.67376 3.69877 3.85761 3.98948 4.06793 4.12614 4.19424 4.31567 4.32200 4.44471 4.46171 4.51772 4.55468 4.61905 4.71868 4.77302 4.86728 4.93125 5.02501 5.06048 5.30678 5.38951 5.44586 5.47028 6.02937 6.12757 6.22129 6.26277 6.98052 7.08141 7.09020 8.76420 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016837 B = 0.002516 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.585344 B =11127.864944 C =12387.759058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.168 4.168 3 C -0.026 4.026 4 O -0.173 6.173 5 C 0.035 3.965 6 C -0.260 4.260 7 C 0.591 3.409 8 O -0.575 6.575 9 N -0.604 5.604 10 C 0.086 3.914 11 C 0.088 3.912 12 N -0.608 5.608 13 C 0.536 3.464 14 O -0.563 6.563 15 C -0.124 4.124 16 S -0.156 6.156 17 C -0.540 4.540 18 H 0.086 0.914 19 C 0.012 3.988 20 N -0.913 5.913 21 Si 0.998 3.002 22 H -0.253 1.253 23 H -0.277 1.277 24 H -0.276 1.276 25 C 0.103 3.897 26 C 0.107 3.893 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.242 0.758 31 H 0.241 0.759 32 H 0.095 0.905 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.270 0.730 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.023 22.844 -16.054 29.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.170 4.170 3 C -0.092 4.092 4 O -0.067 6.067 5 C -0.035 4.035 6 C -0.265 4.265 7 C 0.382 3.618 8 O -0.455 6.455 9 N -0.337 5.337 10 C -0.036 4.036 11 C -0.035 4.035 12 N -0.343 5.343 13 C 0.324 3.676 14 O -0.441 6.441 15 C -0.275 4.275 16 S 0.071 5.929 17 C -0.688 4.688 18 H 0.104 0.896 19 C -0.193 4.193 20 N -0.550 5.550 21 Si 0.820 3.180 22 H -0.176 1.176 23 H -0.203 1.203 24 H -0.201 1.201 25 C -0.020 4.020 26 C -0.016 4.016 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.108 0.892 30 H 0.258 0.742 31 H 0.257 0.743 32 H 0.113 0.887 33 H 0.142 0.858 34 H 0.104 0.896 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.607 20.948 -16.477 28.007 hybrid contribution 0.594 0.777 0.804 1.266 sum -8.014 21.725 -15.673 27.961 Atomic orbital electron populations 1.20198 0.88441 1.03119 1.02558 1.21617 0.97629 0.90803 1.06947 1.24339 0.78865 1.00670 1.05305 1.83850 1.29997 1.22294 1.70586 1.24925 0.98664 0.80991 0.98963 1.21308 0.95214 0.93148 1.16802 1.17673 0.80552 0.84769 0.78816 1.90756 1.31547 1.80164 1.43042 1.48003 1.40833 1.06940 1.37898 1.22673 0.91545 1.02585 0.86813 1.22487 1.03647 0.78980 0.98347 1.48021 1.40503 1.08002 1.37775 1.20212 0.81143 0.85501 0.80737 1.90693 1.65531 1.18390 1.69466 1.23376 1.00401 1.03564 1.00128 1.85688 1.50385 1.11269 1.45523 1.23221 1.25501 0.96288 1.23804 0.89552 1.26134 0.99051 0.95645 0.98462 1.70194 1.40769 1.07498 1.36496 0.84908 0.77029 0.78872 0.77159 1.17633 1.20261 1.20132 1.21928 0.91102 1.01515 0.87491 1.21931 1.02891 0.79954 0.96797 0.90889 0.93120 0.89178 0.74160 0.74261 0.88679 0.85842 0.89631 0.86614 0.86601 0.87208 0.92094 0.90503 0.89081 0.88140 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 10.38 71.23 0.74 -0.50 16 2 C -0.17 -2.56 6.38 -18.49 -0.12 -2.68 16 3 C -0.03 -0.26 11.96 66.89 0.80 0.54 16 4 O -0.17 -1.94 10.52 4.50 0.05 -1.89 16 5 C 0.03 0.37 9.78 67.39 0.66 1.03 16 6 C -0.26 -4.42 5.32 -18.99 -0.10 -4.53 16 7 C 0.59 13.00 7.56 86.65 0.66 13.66 16 8 O -0.57 -17.14 15.79 -4.08 -0.06 -17.21 16 9 N -0.60 -11.06 2.94 -821.07 -2.42 -13.47 16 10 C 0.09 1.10 5.85 86.56 0.51 1.60 16 11 C 0.09 1.45 6.52 86.56 0.56 2.02 16 12 N -0.61 -15.27 2.95 -817.16 -2.41 -17.68 16 13 C 0.54 19.00 7.72 87.66 0.68 19.68 16 14 O -0.56 -25.41 15.27 -3.05 -0.05 -25.45 16 15 C -0.12 -4.56 4.50 71.24 0.32 -4.24 16 16 S -0.16 -8.38 20.57 -56.49 -1.16 -9.54 16 17 C -0.54 -29.63 9.50 67.96 0.65 -28.99 16 18 H 0.09 4.33 7.80 -2.91 -0.02 4.31 16 19 C 0.01 0.64 5.49 84.86 0.47 1.11 16 20 N -0.91 -55.17 13.22 21.65 0.29 -54.89 16 21 Si 1.00 42.25 29.55 68.60 2.03 44.28 16 22 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 23 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 25 C 0.10 2.41 6.59 86.41 0.57 2.98 16 26 C 0.11 2.19 6.60 86.41 0.57 2.76 16 27 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.05 1.01 7.40 -2.39 -0.02 0.99 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.24 0.42 8.06 -2.91 -0.02 0.39 16 31 H 0.24 0.95 7.54 -2.91 -0.02 0.93 16 32 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.12 1.03 4.86 -2.39 -0.01 1.02 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.12 1.68 5.91 -2.39 -0.01 1.66 16 36 H 0.12 3.67 7.72 -2.40 -0.02 3.65 16 37 H 0.11 3.62 7.91 -2.40 -0.02 3.60 16 38 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.09 2.47 7.00 -2.39 -0.02 2.46 16 41 H 0.10 2.18 6.99 -2.39 -0.02 2.17 16 42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -83.48 364.64 4.27 -79.21 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 1.05 Total: 12.21 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 6.95 Total: 4.44 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -4.54 Total: -86.04 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.06 Total: -44.55 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -83.48 4.27 -79.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282852977.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.460 kcal (2) G-P(sol) polarization free energy of solvation -83.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds