Wall clock time and date at job start Tue Mar 31 2020 20:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35129 * 126.44528 * 2 1 4 4 O 1.33924 * 108.77209 * 180.02562 * 3 2 1 5 5 C 1.34916 * 109.38369 * 359.97438 * 4 3 2 6 6 C 1.46652 * 125.98960 * 179.97438 * 5 4 3 7 7 O 1.21695 * 120.00612 * 180.02562 * 6 5 4 8 8 N 1.34778 * 119.99940 * 0.02562 * 6 5 4 9 9 C 1.47486 * 125.59413 * 0.02562 * 8 6 5 10 10 C 1.54323 * 107.03754 * 181.00840 * 9 8 6 11 11 C 1.55153 * 103.10236 * 22.24109 * 10 9 8 12 12 H 1.09003 * 111.00505 * 82.48412 * 11 10 9 13 13 N 1.46498 * 111.00625 * 206.29678 * 11 10 9 14 14 C 1.34780 * 120.00307 * 204.99698 * 13 11 10 15 15 O 1.21279 * 119.99489 * 0.02562 * 14 13 11 16 16 C 1.50697 * 120.00122 * 179.97438 * 14 13 11 17 17 S 1.80994 * 109.47162 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00111 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00108 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99959 * 179.97438 * 18 17 16 21 21 N 1.31635 * 119.99712 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99983 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47134 * 90.00161 * 22 20 18 24 24 H 1.48505 * 109.47016 * 209.99925 * 22 20 18 25 25 H 1.48497 * 109.47256 * 329.99781 * 22 20 18 26 26 C 1.47428 * 125.64860 * 180.02562 * 8 6 5 27 27 C 1.36545 * 108.02093 * 0.22813 * 5 4 3 28 28 H 1.08997 * 109.47285 * 89.98001 * 1 2 3 29 29 H 1.09004 * 109.47424 * 209.98214 * 1 2 3 30 30 H 1.09000 * 109.46950 * 329.98032 * 1 2 3 31 31 H 1.08004 * 125.61534 * 0.02562 * 3 2 1 32 32 H 1.09000 * 110.02886 * 61.64190 * 9 8 6 33 33 H 1.09005 * 109.96368 * 300.33047 * 9 8 6 34 34 H 1.09002 * 110.72057 * 263.78860 * 10 9 8 35 35 H 1.09003 * 110.71837 * 140.69433 * 10 9 8 36 36 H 0.96999 * 120.00058 * 25.00481 * 13 11 10 37 37 H 1.09003 * 109.47257 * 300.00554 * 16 14 13 38 38 H 1.08998 * 109.47013 * 60.00596 * 16 14 13 39 39 H 0.96997 * 119.99557 * 180.02562 * 21 20 18 40 40 H 1.09000 * 110.36462 * 37.07589 * 26 8 6 41 41 H 1.08998 * 110.36847 * 274.74797 * 26 8 6 42 42 H 1.08001 * 126.64181 * 179.76967 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6804 -0.0006 5 6 3.6260 -0.6681 -0.0004 6 6 4.8378 -1.4941 -0.0014 7 8 4.7471 -2.7077 -0.0015 8 7 6.0520 -0.9092 -0.0021 9 6 6.3049 0.5438 -0.0014 10 6 7.8359 0.7364 -0.0287 11 6 8.3487 -0.6054 -0.6149 12 1 8.2879 -0.6049 -1.7033 13 7 9.7156 -0.8853 -0.1684 14 6 10.5175 -1.6770 -0.9079 15 8 10.1075 -2.1572 -1.9433 16 6 11.9237 -1.9644 -0.4488 17 16 12.7398 -3.0483 -1.6467 18 6 14.3189 -3.2145 -0.8828 19 1 14.5223 -2.7126 0.0515 20 6 15.3011 -3.9914 -1.4815 21 7 16.4806 -4.1160 -0.9105 22 14 14.9490 -4.8601 -3.0973 23 1 15.3142 -3.9694 -4.2280 24 1 15.7492 -6.1089 -3.1725 25 1 13.5039 -5.1928 -3.1759 26 6 7.3461 -1.6156 -0.0037 27 6 2.3408 -1.1291 -0.0048 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3634 -0.8902 0.5136 30 1 -0.3633 0.8898 0.5141 31 1 1.9771 2.1145 0.0004 32 1 5.8905 0.9945 0.9004 33 1 5.8582 0.9997 -0.8851 34 1 8.2232 0.8903 0.9785 35 1 8.1083 1.5696 -0.6765 36 1 10.0436 -0.5010 0.6596 37 1 12.4781 -1.0293 -0.3687 38 1 11.8952 -2.4543 0.5245 39 1 17.1671 -4.6586 -1.3291 40 1 7.2878 -2.5126 -0.6202 41 1 7.6394 -1.8722 1.0143 42 1 2.0266 -2.1624 -0.0094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293606247.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:33 Heat of formation + Delta-G solvation = -79.316743 kcal Electronic energy + Delta-G solvation = -25611.114456 eV Core-core repulsion = 21683.110926 eV Total energy + Delta-G solvation = -3928.003530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.73663 -41.36696 -40.43245 -38.61514 -35.55964 -35.08832 -34.66891 -32.55502 -31.50161 -30.82385 -29.40844 -28.02492 -27.81829 -25.57151 -23.27342 -22.52079 -22.07450 -21.77276 -20.42857 -19.90733 -18.65850 -18.19058 -17.76434 -17.62836 -17.21964 -17.05744 -16.85207 -16.42998 -16.26549 -15.63955 -15.32206 -14.95652 -14.78768 -14.57381 -14.39185 -14.19746 -14.08664 -14.03646 -13.94955 -13.59755 -13.52929 -13.35107 -13.02365 -12.91744 -12.69700 -12.59460 -12.54429 -11.91139 -11.87111 -11.61295 -11.17198 -11.07165 -10.77675 -10.52817 -10.33447 -9.96776 -9.53877 -8.99518 -8.51713 -6.22157 -0.05162 0.97383 1.30375 1.30580 1.35346 1.47460 1.52083 1.57590 1.90454 1.97097 2.23766 2.29243 2.71821 2.86783 3.23338 3.44378 3.62452 3.79161 3.84996 3.94234 4.03806 4.11758 4.20315 4.25699 4.29578 4.48521 4.52878 4.61836 4.68379 4.72279 4.81671 4.87601 4.94766 5.01327 5.04029 5.06223 5.08741 5.39160 5.49656 5.70839 5.82674 6.11742 6.18097 6.42172 6.75557 6.93937 7.15291 8.60512 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.034410 B = 0.001857 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.521988 B =15074.130106 C =15516.402010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.208 4.208 3 C 0.012 3.988 4 O -0.157 6.157 5 C -0.098 4.098 6 C 0.608 3.392 7 O -0.569 6.569 8 N -0.609 5.609 9 C 0.103 3.897 10 C -0.121 4.121 11 C 0.137 3.863 12 H 0.089 0.911 13 N -0.698 5.698 14 C 0.538 3.462 15 O -0.561 6.561 16 C -0.110 4.110 17 S -0.181 6.181 18 C -0.528 4.528 19 H 0.065 0.935 20 C 0.047 3.953 21 N -0.916 5.916 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.260 1.260 25 H -0.239 1.239 26 C 0.095 3.905 27 C -0.125 4.125 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.256 0.744 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.423 0.577 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.277 0.723 40 H 0.052 0.948 41 H 0.085 0.915 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.874 19.206 5.859 37.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.209 4.209 3 C -0.058 4.058 4 O -0.052 6.052 5 C -0.150 4.150 6 C 0.399 3.601 7 O -0.450 6.450 8 N -0.341 5.341 9 C -0.018 4.018 10 C -0.159 4.159 11 C 0.030 3.970 12 H 0.107 0.893 13 N -0.352 5.352 14 C 0.324 3.676 15 O -0.438 6.438 16 C -0.261 4.261 17 S 0.046 5.954 18 C -0.675 4.675 19 H 0.083 0.917 20 C -0.159 4.159 21 N -0.554 5.554 22 Si 0.734 3.266 23 H -0.186 1.186 24 H -0.185 1.185 25 H -0.163 1.163 26 C -0.029 4.029 27 C -0.146 4.146 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.272 0.728 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.262 0.738 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -32.181 17.872 4.169 37.046 hybrid contribution 1.064 -0.473 0.984 1.524 sum -31.117 17.399 5.153 36.021 Atomic orbital electron populations 1.20259 0.86708 1.03889 1.03085 1.20827 0.99126 0.91670 1.09306 1.25182 0.78792 1.01647 1.00159 1.84118 1.30407 1.20149 1.70555 1.21439 0.94875 0.81600 1.17054 1.16519 0.81245 0.85788 0.76590 1.90878 1.86251 1.14313 1.53575 1.48400 1.04422 1.09770 1.71534 1.22442 0.96803 0.78281 1.04322 1.22981 0.92614 0.95728 1.04529 1.21967 0.80017 0.95069 0.99907 0.89323 1.45506 1.12165 1.50526 1.27010 1.20047 0.86521 0.77664 0.83395 1.90718 1.75998 1.51497 1.25601 1.23266 0.95067 1.04421 1.03366 1.84797 1.12343 1.63791 1.34492 1.22459 0.97729 1.36040 1.11286 0.91705 1.25528 0.93879 0.95805 1.00639 1.70013 1.04619 1.39892 1.40869 0.85897 0.81056 0.79546 0.80061 1.18621 1.18455 1.16310 1.22638 0.82303 0.96131 1.01877 1.22081 0.91022 1.01391 1.00131 0.90641 0.91580 0.89184 0.72787 0.88486 0.89631 0.87018 0.86591 0.73794 0.86192 0.86613 0.91401 0.92951 0.89705 0.83139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.39 71.24 0.74 0.23 16 2 C -0.21 -2.44 6.14 -20.06 -0.12 -2.56 16 3 C 0.01 0.09 12.00 67.10 0.81 0.90 16 4 O -0.16 -2.16 8.28 -5.00 -0.04 -2.20 16 5 C -0.10 -2.01 6.95 24.07 0.17 -1.84 16 6 C 0.61 16.02 7.82 86.44 0.68 16.70 16 7 O -0.57 -19.83 17.12 -4.33 -0.07 -19.90 16 8 N -0.61 -12.84 3.34 -815.34 -2.72 -15.56 16 9 C 0.10 1.20 5.57 86.64 0.48 1.68 16 10 C -0.12 -1.07 6.58 31.78 0.21 -0.86 16 11 C 0.14 2.59 3.42 46.38 0.16 2.74 16 12 H 0.09 2.13 7.54 -2.39 -0.02 2.11 16 13 N -0.70 -14.16 5.20 -435.99 -2.27 -16.42 16 14 C 0.54 17.36 7.85 87.66 0.69 18.05 16 15 O -0.56 -23.45 15.50 -3.03 -0.05 -23.50 16 16 C -0.11 -3.93 6.16 71.24 0.44 -3.50 16 17 S -0.18 -9.04 18.55 -56.49 -1.05 -10.09 16 18 C -0.53 -30.44 10.04 67.95 0.68 -29.76 16 19 H 0.06 3.92 8.03 -2.91 -0.02 3.89 16 20 C 0.05 2.75 5.50 84.86 0.47 3.22 16 21 N -0.92 -55.60 13.97 21.65 0.30 -55.30 16 22 Si 0.91 45.20 27.74 68.60 1.90 47.11 16 23 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.24 -11.92 6.74 99.48 0.67 -11.25 16 26 C 0.09 2.18 6.60 86.85 0.57 2.76 16 27 C -0.13 -2.35 10.57 22.39 0.24 -2.11 16 28 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.09 0.16 8.14 -2.39 -0.02 0.15 16 31 H 0.26 -0.58 8.06 -2.91 -0.02 -0.61 16 32 H 0.10 0.82 7.79 -2.39 -0.02 0.81 16 33 H 0.09 0.90 7.69 -2.38 -0.02 0.88 16 34 H 0.11 0.50 8.00 -2.39 -0.02 0.49 16 35 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.42 5.31 8.57 -92.71 -0.79 4.52 16 37 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 38 H 0.12 3.77 8.14 -2.40 -0.02 3.75 16 39 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 40 H 0.05 1.61 8.04 -2.39 -0.02 1.59 16 41 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -84.95 373.31 2.43 -82.52 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.22 Total: 7.71 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 6.20 Total: 5.64 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -4.69 Total: -87.28 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -0.16 Total: -45.60 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.11 kcal Atomic # 16 Polarization: -9.04 SS G_CDS: -1.05 Total: -10.09 kcal Total: -84.95 2.43 -82.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293606247.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.204 kcal (2) G-P(sol) polarization free energy of solvation -84.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds