Wall clock time and date at job start Tue Mar 31 2020 20:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35126 * 126.44414 * 2 1 4 4 O 1.33929 * 108.76884 * 180.02562 * 3 2 1 5 5 C 1.34911 * 109.38435 * 359.97438 * 4 3 2 6 6 C 1.46664 * 125.98714 * 180.02562 * 5 4 3 7 7 O 1.21696 * 120.00084 * 180.02562 * 6 5 4 8 8 N 1.34776 * 120.00057 * 0.02562 * 6 5 4 9 9 C 1.46494 * 119.99909 * 179.97438 * 8 6 5 10 10 H 1.08994 * 112.85213 * 336.19458 * 9 8 6 11 11 C 1.53784 * 113.69075 * 107.46785 * 9 8 6 12 12 C 1.53776 * 87.08297 * 139.99185 * 11 9 8 13 13 H 1.09002 * 113.68478 * 220.00832 * 12 11 9 14 14 N 1.46497 * 113.61622 * 89.11780 * 12 11 9 15 15 C 1.34778 * 120.00309 * 107.50449 * 14 12 11 16 16 O 1.21276 * 119.99491 * 359.97438 * 15 14 12 17 17 C 1.50699 * 119.99778 * 180.02562 * 15 14 12 18 18 S 1.81004 * 109.46742 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99907 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99736 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99832 * 180.27629 * 19 18 17 22 22 N 1.31634 * 120.00296 * 359.72198 * 21 19 18 23 23 Si 1.86801 * 119.99859 * 179.72079 * 21 19 18 24 24 H 1.48494 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47021 * 119.99666 * 23 21 19 26 26 H 1.48501 * 109.47039 * 240.00083 * 23 21 19 27 27 C 1.53781 * 87.08282 * 334.56388 * 12 11 9 28 28 C 1.36543 * 108.02594 * 0.26391 * 5 4 3 29 29 H 1.08988 * 109.47294 * 90.02810 * 1 2 3 30 30 H 1.09008 * 109.46842 * 210.02746 * 1 2 3 31 31 H 1.08994 * 109.46851 * 330.02231 * 1 2 3 32 32 H 1.08005 * 125.61468 * 0.03222 * 3 2 1 33 33 H 0.96997 * 119.99887 * 359.97438 * 8 6 5 34 34 H 1.08997 * 113.61315 * 25.43632 * 11 9 8 35 35 H 1.09007 * 113.61162 * 254.54293 * 11 9 8 36 36 H 0.97005 * 119.99622 * 287.49649 * 14 12 11 37 37 H 1.09000 * 109.47396 * 59.99696 * 17 15 14 38 38 H 1.09001 * 109.47080 * 299.99119 * 17 15 14 39 39 H 0.96995 * 120.00136 * 180.02562 * 22 21 19 40 40 H 1.08998 * 113.61280 * 139.98157 * 27 12 11 41 41 H 1.08993 * 113.61588 * 270.80570 * 27 12 11 42 42 H 1.07997 * 126.64814 * 179.69901 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6804 -0.0006 5 6 3.6260 -0.6681 -0.0004 6 6 4.8379 -1.4942 -0.0003 7 8 4.7472 -2.7077 -0.0006 8 7 6.0521 -0.9093 0.0001 9 6 7.2626 -1.7344 0.0007 10 1 7.0946 -2.7320 0.4062 11 6 8.0118 -1.7333 -1.3423 12 6 9.3140 -1.6790 -0.5262 13 1 10.0707 -1.0203 -0.9525 14 7 9.8420 -2.9996 -0.1749 15 6 10.9455 -3.4696 -0.7896 16 8 11.5011 -2.7994 -1.6339 17 6 11.4882 -4.8283 -0.4285 18 16 12.9636 -5.1714 -1.4192 19 6 13.3753 -6.7728 -0.8105 20 1 12.7661 -7.2333 -0.0468 21 6 14.4862 -7.4399 -1.3080 22 7 15.2290 -6.8785 -2.2385 23 14 14.9272 -9.1343 -0.6570 24 1 13.9414 -9.5394 0.3770 25 1 14.9058 -10.1142 -1.7727 26 1 16.2853 -9.0963 -0.0574 27 6 8.4907 -1.0259 0.5965 28 6 2.3408 -1.1292 -0.0056 29 1 -0.3633 -0.0005 -1.0275 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8901 0.5135 32 1 1.9770 2.1145 0.0005 33 1 6.1245 0.0580 -0.0001 34 1 7.8339 -0.8399 -1.9408 35 1 7.8907 -2.6557 -1.9105 36 1 9.3974 -3.5357 0.5003 37 1 10.7316 -5.5868 -0.6292 38 1 11.7487 -4.8460 0.6298 39 1 16.0051 -7.3448 -2.5864 40 1 8.7563 -1.3772 1.5936 41 1 8.4450 0.0609 0.5289 42 1 2.0266 -2.1625 -0.0115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295088519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:05 Heat of formation + Delta-G solvation = -40.762414 kcal Electronic energy + Delta-G solvation = -24988.792539 eV Core-core repulsion = 21062.460849 eV Total energy + Delta-G solvation = -3926.331689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.17707 -40.61896 -39.32889 -37.91007 -34.88328 -34.22087 -32.54744 -32.41531 -30.96264 -29.07690 -27.84598 -26.04169 -25.55987 -25.22318 -23.06902 -21.60830 -21.04561 -20.33078 -19.72384 -18.32459 -17.85857 -17.01526 -16.84454 -16.77788 -16.11991 -15.99294 -15.09947 -15.00223 -14.79682 -14.68423 -14.33908 -14.03953 -13.74927 -13.67181 -13.52687 -13.17750 -13.12189 -12.97107 -12.83034 -12.70461 -12.31450 -12.18993 -11.91757 -11.11910 -11.05914 -11.01265 -10.86306 -10.75459 -10.59263 -10.20061 -9.79893 -9.51602 -9.43713 -9.07586 -9.05803 -8.91056 -8.23016 -6.49378 -6.21141 -3.91596 0.60213 1.81631 2.21008 2.75684 2.79065 2.98939 3.03816 3.22583 3.28679 3.33306 3.67506 4.08066 4.19761 4.21087 4.26849 4.29202 4.45321 4.66233 4.71182 4.83637 5.09837 5.11262 5.13666 5.14328 5.28973 5.31771 5.33993 5.43330 5.47294 5.51842 5.58546 5.61243 5.81334 5.88834 5.90503 5.90763 6.06186 6.14994 6.35138 6.63972 7.03824 7.60847 7.66527 7.66811 8.36346 8.58055 9.24528 10.86371 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.029744 B = 0.001631 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.132389 B =17165.919266 C =17794.903282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.193 4.193 3 C -0.009 4.009 4 O -0.163 6.163 5 C -0.078 4.078 6 C 0.603 3.397 7 O -0.517 6.517 8 N -0.708 5.708 9 C 0.120 3.880 10 H 0.119 0.881 11 C -0.164 4.164 12 C 0.129 3.871 13 H 0.111 0.889 14 N -0.723 5.723 15 C 0.536 3.464 16 O -0.515 6.515 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.152 4.152 28 C -0.116 4.116 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.210 0.790 33 H 0.406 0.594 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.399 0.601 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.268 0.732 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.386 18.510 7.643 34.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.195 4.195 3 C -0.079 4.079 4 O -0.058 6.058 5 C -0.130 4.130 6 C 0.389 3.611 7 O -0.394 6.394 8 N -0.358 5.358 9 C 0.015 3.985 10 H 0.137 0.863 11 C -0.204 4.204 12 C 0.022 3.978 13 H 0.129 0.871 14 N -0.376 5.376 15 C 0.322 3.678 16 O -0.388 6.388 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.191 4.191 28 C -0.137 4.137 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.226 0.774 33 H 0.241 0.759 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.234 0.766 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.118 0.882 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -27.054 18.901 6.117 33.564 hybrid contribution -0.810 -1.634 1.679 2.479 sum -27.864 17.267 7.795 33.694 Atomic orbital electron populations 1.20199 0.88498 1.02982 1.02487 1.20525 0.97844 0.92379 1.08734 1.24223 0.79858 1.00105 1.03705 1.84045 1.29430 1.21644 1.70728 1.22067 0.96191 0.80579 1.14130 1.16597 0.81383 0.86433 0.76655 1.90914 1.85927 1.12254 1.50279 1.45892 1.05105 1.10593 1.74184 1.22790 0.81672 0.96242 0.97766 0.86321 1.23971 0.95546 1.03925 0.97006 1.21520 0.95012 0.85822 0.95421 0.87140 1.45735 1.29768 1.18428 1.43712 1.20339 0.79036 0.87815 0.80581 1.90699 1.58090 1.58737 1.31319 1.23541 1.05515 0.95533 1.05890 1.85391 1.25022 1.22181 1.50762 1.22917 1.15484 1.02929 1.27007 0.90837 1.24990 0.95160 0.98647 0.94769 1.70027 1.16084 1.37868 1.26332 0.86114 0.78388 0.82241 0.78741 1.19608 1.20561 1.20575 1.23753 0.94379 1.01232 0.99743 1.21894 0.90576 1.00717 1.00505 0.91135 0.91165 0.91370 0.77364 0.75879 0.88827 0.90089 0.76630 0.89076 0.89108 0.92239 0.89793 0.88238 0.82197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.39 36.01 0.37 0.04 16 2 C -0.19 -1.24 6.14 -104.93 -0.64 -1.88 16 3 C -0.01 -0.05 12.00 29.63 0.36 0.31 16 4 O -0.16 -1.22 10.40 5.01 0.05 -1.16 16 5 C -0.08 -0.72 7.13 -36.79 -0.26 -0.98 16 6 C 0.60 6.40 7.79 -12.86 -0.10 6.30 16 7 O -0.52 -7.24 16.46 5.19 0.09 -7.16 16 8 N -0.71 -5.74 5.35 -54.33 -0.29 -6.03 16 9 C 0.12 1.04 4.11 -67.11 -0.28 0.76 16 10 H 0.12 1.18 7.46 -51.93 -0.39 0.80 16 11 C -0.16 -1.63 7.68 -25.92 -0.20 -1.83 16 12 C 0.13 1.40 4.32 -67.12 -0.29 1.11 16 13 H 0.11 1.37 7.46 -51.93 -0.39 0.98 16 14 N -0.72 -9.29 5.26 -53.02 -0.28 -9.57 16 15 C 0.54 9.81 7.85 -10.99 -0.09 9.72 16 16 O -0.51 -11.47 15.46 5.56 0.09 -11.38 16 17 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 20 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 23 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 C -0.15 -1.11 7.58 -25.91 -0.20 -1.31 16 28 C -0.12 -1.00 10.57 -39.39 -0.42 -1.41 16 29 H 0.07 0.24 8.14 -51.94 -0.42 -0.18 16 30 H 0.07 0.26 8.14 -51.92 -0.42 -0.16 16 31 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.21 0.29 8.06 -52.48 -0.42 -0.14 16 33 H 0.41 2.36 8.49 -40.82 -0.35 2.01 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.40 4.09 8.70 -40.82 -0.36 3.73 16 37 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 38 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.54 8.12 -51.93 -0.42 0.12 16 42 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 381.92 15.07 5.76 5.76 Total: -1.00 -37.06 381.92 -8.08 -45.15 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.67 Total: 2.30 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -1.32 Total: -5.04 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.16 Total: -41.11 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: 0.22 Total: -19.71 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.06 -8.08 -45.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295088519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.385 kcal (2) G-P(sol) polarization free energy of solvation -37.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds