Wall clock time and date at job start Tue Mar 31 2020 20:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35126 * 126.44414 * 2 1 4 4 O 1.33929 * 108.76884 * 180.02562 * 3 2 1 5 5 C 1.34911 * 109.38435 * 359.97438 * 4 3 2 6 6 C 1.46664 * 125.98714 * 180.02562 * 5 4 3 7 7 O 1.21696 * 120.00084 * 180.02562 * 6 5 4 8 8 N 1.34776 * 120.00057 * 0.02562 * 6 5 4 9 9 C 1.46494 * 119.99909 * 179.97438 * 8 6 5 10 10 H 1.08994 * 112.85213 * 336.19458 * 9 8 6 11 11 C 1.53784 * 113.69075 * 107.46785 * 9 8 6 12 12 C 1.53776 * 87.08297 * 139.99185 * 11 9 8 13 13 H 1.09002 * 113.68478 * 220.00832 * 12 11 9 14 14 N 1.46497 * 113.61622 * 89.11780 * 12 11 9 15 15 C 1.34778 * 120.00309 * 107.50449 * 14 12 11 16 16 O 1.21276 * 119.99491 * 359.97438 * 15 14 12 17 17 C 1.50699 * 119.99778 * 180.02562 * 15 14 12 18 18 S 1.81004 * 109.46742 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99907 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99736 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99832 * 180.27629 * 19 18 17 22 22 N 1.31634 * 120.00296 * 359.72198 * 21 19 18 23 23 Si 1.86801 * 119.99859 * 179.72079 * 21 19 18 24 24 H 1.48494 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47021 * 119.99666 * 23 21 19 26 26 H 1.48501 * 109.47039 * 240.00083 * 23 21 19 27 27 C 1.53781 * 87.08282 * 334.56388 * 12 11 9 28 28 C 1.36543 * 108.02594 * 0.26391 * 5 4 3 29 29 H 1.08988 * 109.47294 * 90.02810 * 1 2 3 30 30 H 1.09008 * 109.46842 * 210.02746 * 1 2 3 31 31 H 1.08994 * 109.46851 * 330.02231 * 1 2 3 32 32 H 1.08005 * 125.61468 * 0.03222 * 3 2 1 33 33 H 0.96997 * 119.99887 * 359.97438 * 8 6 5 34 34 H 1.08997 * 113.61315 * 25.43632 * 11 9 8 35 35 H 1.09007 * 113.61162 * 254.54293 * 11 9 8 36 36 H 0.97005 * 119.99622 * 287.49649 * 14 12 11 37 37 H 1.09000 * 109.47396 * 59.99696 * 17 15 14 38 38 H 1.09001 * 109.47080 * 299.99119 * 17 15 14 39 39 H 0.96995 * 120.00136 * 180.02562 * 22 21 19 40 40 H 1.08998 * 113.61280 * 139.98157 * 27 12 11 41 41 H 1.08993 * 113.61588 * 270.80570 * 27 12 11 42 42 H 1.07997 * 126.64814 * 179.69901 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6804 -0.0006 5 6 3.6260 -0.6681 -0.0004 6 6 4.8379 -1.4942 -0.0003 7 8 4.7472 -2.7077 -0.0006 8 7 6.0521 -0.9093 0.0001 9 6 7.2626 -1.7344 0.0007 10 1 7.0946 -2.7320 0.4062 11 6 8.0118 -1.7333 -1.3423 12 6 9.3140 -1.6790 -0.5262 13 1 10.0707 -1.0203 -0.9525 14 7 9.8420 -2.9996 -0.1749 15 6 10.9455 -3.4696 -0.7896 16 8 11.5011 -2.7994 -1.6339 17 6 11.4882 -4.8283 -0.4285 18 16 12.9636 -5.1714 -1.4192 19 6 13.3753 -6.7728 -0.8105 20 1 12.7661 -7.2333 -0.0468 21 6 14.4862 -7.4399 -1.3080 22 7 15.2290 -6.8785 -2.2385 23 14 14.9272 -9.1343 -0.6570 24 1 13.9414 -9.5394 0.3770 25 1 14.9058 -10.1142 -1.7727 26 1 16.2853 -9.0963 -0.0574 27 6 8.4907 -1.0259 0.5965 28 6 2.3408 -1.1292 -0.0056 29 1 -0.3633 -0.0005 -1.0275 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8901 0.5135 32 1 1.9770 2.1145 0.0005 33 1 6.1245 0.0580 -0.0001 34 1 7.8339 -0.8399 -1.9408 35 1 7.8907 -2.6557 -1.9105 36 1 9.3974 -3.5357 0.5003 37 1 10.7316 -5.5868 -0.6292 38 1 11.7487 -4.8460 0.6298 39 1 16.0051 -7.3448 -2.5864 40 1 8.7563 -1.3772 1.5936 41 1 8.4450 0.0609 0.5289 42 1 2.0266 -2.1625 -0.0115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001295088519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:04 Heat of formation + Delta-G solvation = -68.296019 kcal Electronic energy + Delta-G solvation = -24989.986485 eV Core-core repulsion = 21062.460849 eV Total energy + Delta-G solvation = -3927.525636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.71310 -41.53732 -40.42718 -39.03000 -35.54203 -35.02515 -34.58845 -33.66042 -31.56933 -30.55802 -28.26183 -27.68257 -26.78166 -26.06130 -23.82399 -22.28132 -22.15512 -21.11198 -20.62438 -19.83145 -18.92109 -18.15092 -17.47502 -17.40315 -17.23924 -17.06289 -16.88368 -16.41401 -16.01680 -15.78644 -15.57278 -15.00490 -14.65871 -14.45078 -14.37788 -14.11483 -14.05291 -13.95705 -13.54764 -13.52784 -13.37569 -13.19879 -13.16098 -12.91580 -12.58668 -12.57186 -11.97749 -11.73002 -11.69895 -11.43181 -11.16124 -10.97679 -10.75962 -10.29414 -10.28061 -10.07007 -9.56135 -8.66770 -8.35308 -6.13124 -0.02327 1.26383 1.31615 1.41049 1.46367 1.57483 1.58085 1.61414 2.02082 2.16756 2.22848 2.27775 2.99008 3.30980 3.34304 3.51567 3.65407 3.80213 3.83415 3.94040 4.00670 4.04706 4.30311 4.32824 4.50681 4.54055 4.63563 4.69148 4.75882 4.85841 4.86882 4.92229 4.94584 4.99231 5.02048 5.07619 5.29164 5.41981 5.48859 5.58097 5.81215 6.19753 6.37751 6.47354 6.95167 7.06339 7.22376 8.74206 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.029744 B = 0.001631 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.132389 B =17165.919266 C =17794.903282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.209 4.209 3 C 0.009 3.991 4 O -0.164 6.164 5 C -0.103 4.103 6 C 0.601 3.399 7 O -0.562 6.562 8 N -0.693 5.693 9 C 0.123 3.877 10 H 0.106 0.894 11 C -0.162 4.162 12 C 0.115 3.885 13 H 0.096 0.904 14 N -0.699 5.699 15 C 0.539 3.461 16 O -0.562 6.562 17 C -0.132 4.132 18 S -0.149 6.149 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.258 1.258 25 H -0.274 1.274 26 H -0.273 1.273 27 C -0.125 4.125 28 C -0.128 4.128 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.253 0.747 33 H 0.420 0.580 34 H 0.108 0.892 35 H 0.056 0.944 36 H 0.415 0.585 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.271 0.729 40 H 0.097 0.903 41 H 0.128 0.872 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.434 19.778 9.576 37.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.210 4.210 3 C -0.061 4.061 4 O -0.059 6.059 5 C -0.155 4.155 6 C 0.388 3.612 7 O -0.443 6.443 8 N -0.343 5.343 9 C 0.018 3.982 10 H 0.124 0.876 11 C -0.202 4.202 12 C 0.009 3.991 13 H 0.114 0.886 14 N -0.352 5.352 15 C 0.325 3.675 16 O -0.439 6.439 17 C -0.283 4.283 18 S 0.078 5.922 19 C -0.695 4.695 20 H 0.100 0.900 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.181 1.181 25 H -0.200 1.200 26 H -0.198 1.198 27 C -0.163 4.163 28 C -0.149 4.149 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.269 0.731 33 H 0.257 0.743 34 H 0.127 0.873 35 H 0.075 0.925 36 H 0.252 0.748 37 H 0.125 0.875 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.115 0.885 41 H 0.146 0.854 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -29.144 20.214 8.089 36.379 hybrid contribution -0.352 -1.885 1.079 2.200 sum -29.496 18.329 9.167 35.917 Atomic orbital electron populations 1.20261 0.86806 1.03874 1.03076 1.20846 0.99120 0.91830 1.09202 1.25114 0.78721 1.01630 1.00608 1.84039 1.30622 1.20530 1.70724 1.21770 0.95685 0.81422 1.16601 1.16803 0.82301 0.86078 0.75975 1.90881 1.86657 1.14126 1.52610 1.45752 1.04232 1.11224 1.73063 1.22670 0.82323 0.96268 0.96956 0.87556 1.23974 0.95231 1.03490 0.97543 1.21726 0.95011 0.84507 0.97868 0.88571 1.45477 1.27778 1.19318 1.42624 1.20029 0.80103 0.86952 0.80455 1.90686 1.59959 1.59688 1.33604 1.23391 1.02246 0.97285 1.05379 1.85540 1.29895 1.22961 1.53796 1.23250 1.15968 1.03094 1.27197 0.89972 1.26112 0.94877 1.03253 0.94807 1.70185 1.16755 1.39951 1.27853 0.84908 0.78407 0.76305 0.78339 1.18139 1.19960 1.19812 1.23671 0.91326 1.02514 0.98838 1.22108 0.91213 1.01326 1.00214 0.90649 0.91482 0.89335 0.73100 0.74259 0.87323 0.92500 0.74760 0.87466 0.86984 0.91971 0.88459 0.85365 0.82952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.39 71.24 0.74 0.26 16 2 C -0.21 -2.30 6.14 -20.06 -0.12 -2.42 16 3 C 0.01 0.07 12.00 67.10 0.81 0.87 16 4 O -0.16 -2.10 10.40 -4.99 -0.05 -2.15 16 5 C -0.10 -1.84 7.13 24.08 0.17 -1.67 16 6 C 0.60 12.66 7.79 86.44 0.67 13.34 16 7 O -0.56 -16.27 16.46 -4.33 -0.07 -16.34 16 8 N -0.69 -10.25 5.35 -444.01 -2.38 -12.62 16 9 C 0.12 1.95 4.11 45.52 0.19 2.14 16 10 H 0.11 2.03 7.46 -2.39 -0.02 2.02 16 11 C -0.16 -3.11 7.68 31.12 0.24 -2.87 16 12 C 0.12 2.35 4.32 45.52 0.20 2.54 16 13 H 0.10 2.33 7.46 -2.39 -0.02 2.31 16 14 N -0.70 -17.25 5.26 -440.05 -2.32 -19.57 16 15 C 0.54 19.73 7.85 87.66 0.69 20.42 16 16 O -0.56 -25.74 15.46 -3.02 -0.05 -25.79 16 17 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16 18 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 19 C -0.55 -31.57 9.50 67.95 0.65 -30.93 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.82 5.49 84.86 0.47 1.29 16 22 N -0.91 -56.30 13.22 21.65 0.29 -56.02 16 23 Si 1.00 44.06 29.55 68.60 2.03 46.09 16 24 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 27 C -0.13 -1.47 7.58 31.12 0.24 -1.24 16 28 C -0.13 -2.17 10.57 22.39 0.24 -1.93 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.07 0.42 8.14 -2.38 -0.02 0.41 16 31 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.25 -0.51 8.06 -2.91 -0.02 -0.54 16 33 H 0.42 3.88 8.49 -92.71 -0.79 3.09 16 34 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.42 7.74 8.70 -92.70 -0.81 6.93 16 37 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 38 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 39 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 40 H 0.10 0.99 8.14 -2.39 -0.02 0.98 16 41 H 0.13 0.87 8.12 -2.39 -0.02 0.85 16 42 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -84.96 381.92 1.37 -83.60 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -0.52 Total: 17.31 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 5.60 Total: -5.02 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -4.41 Total: -88.21 kcal Atomic # 8 Polarization: -44.11 SS G_CDS: -0.17 Total: -44.28 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -84.96 1.37 -83.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295088519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.300 kcal (2) G-P(sol) polarization free energy of solvation -84.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds