Wall clock time and date at job start Tue Mar 31 2020 20:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35135 * 126.43929 * 2 1 4 4 O 1.33926 * 108.76783 * 179.75425 * 3 2 1 5 5 C 1.34916 * 109.38238 * 0.37783 * 4 3 2 6 6 C 1.46656 * 125.98782 * 179.88655 * 5 4 3 7 7 O 1.21700 * 119.99976 * 179.41166 * 6 5 4 8 8 N 1.34777 * 119.99952 * 359.69455 * 6 5 4 9 9 C 1.47067 * 136.05761 * 359.62059 * 8 6 5 10 10 C 1.53241 * 88.08271 * 207.20667 * 9 8 6 11 11 C 1.47070 * 136.05847 * 179.97438 * 8 6 5 12 12 H 1.09000 * 113.46950 * 267.62471 * 11 8 6 13 13 C 1.53007 * 113.46621 * 38.05975 * 11 8 6 14 14 N 1.46498 * 109.47359 * 285.49516 * 13 11 8 15 15 C 1.34773 * 119.99760 * 179.97438 * 14 13 11 16 16 O 1.21279 * 120.00582 * 0.02562 * 15 14 13 17 17 C 1.50707 * 119.99567 * 180.02562 * 15 14 13 18 18 S 1.81005 * 109.46972 * 180.02562 * 17 15 14 19 19 C 1.76202 * 99.99859 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00179 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99779 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00319 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99842 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47236 * 59.99905 * 23 21 19 25 25 H 1.48495 * 109.47110 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47158 * 300.00050 * 23 21 19 27 27 C 1.36544 * 108.02440 * 359.62680 * 5 4 3 28 28 H 1.09001 * 109.46831 * 270.02142 * 1 2 3 29 29 H 1.09003 * 109.47641 * 30.01987 * 1 2 3 30 30 H 1.08996 * 109.47165 * 150.02724 * 1 2 3 31 31 H 1.08000 * 125.61543 * 0.02562 * 3 2 1 32 32 H 1.08991 * 113.46810 * 321.94488 * 9 8 6 33 33 H 1.09002 * 113.45982 * 92.38476 * 9 8 6 34 34 H 1.08997 * 114.32556 * 220.46648 * 10 9 8 35 35 H 1.09001 * 114.19426 * 87.73013 * 10 9 8 36 36 H 1.09004 * 109.46991 * 45.49956 * 13 11 8 37 37 H 1.09004 * 109.47067 * 165.49250 * 13 11 8 38 38 H 0.97000 * 119.99570 * 0.02562 * 14 13 11 39 39 H 1.09005 * 109.46831 * 300.00274 * 17 15 14 40 40 H 1.08991 * 109.47355 * 59.99805 * 17 15 14 41 41 H 0.96993 * 120.00071 * 179.97438 * 22 21 19 42 42 H 1.08001 * 126.64552 * 180.22707 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0871 0.0000 4 8 3.5857 0.6806 0.0054 5 6 3.6260 -0.6679 0.0006 6 6 4.8379 -1.4939 0.0018 7 8 4.7471 -2.7075 0.0078 8 7 6.0521 -0.9089 0.0019 9 6 6.5631 0.4701 -0.0056 10 6 7.8249 -0.0559 -0.6981 11 6 7.4491 -1.3687 0.0034 12 1 7.8737 -1.4639 1.0027 13 6 7.6829 -2.6098 -0.8603 14 7 7.1427 -3.7884 -0.1781 15 6 7.2352 -5.0026 -0.7556 16 8 7.7660 -5.1197 -1.8398 17 6 6.6790 -6.2149 -0.0541 18 16 6.9558 -7.6832 -1.0758 19 6 6.2301 -8.9143 -0.0451 20 1 5.7950 -8.6366 0.9035 21 6 6.2178 -10.2412 -0.4523 22 7 6.7487 -10.5799 -1.6083 23 14 5.4492 -11.5465 0.6407 24 1 4.0162 -11.2259 0.8620 25 1 5.5643 -12.8731 -0.0166 26 1 6.1566 -11.5785 1.9461 27 6 2.3408 -1.1291 0.0003 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5134 31 1 1.9769 2.1146 0.0004 32 1 5.9778 1.1465 -0.6284 33 1 6.7496 0.8692 0.9914 34 1 8.7525 0.3916 -0.3414 35 1 7.7549 -0.0939 -1.7852 36 1 7.1820 -2.4841 -1.8202 37 1 8.7525 -2.7427 -1.0234 38 1 6.7179 -3.6946 0.6888 39 1 7.1799 -6.3409 0.9059 40 1 5.6096 -6.0816 0.1090 41 1 6.7404 -11.5071 -1.8927 42 1 2.0267 -2.1624 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298983202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:13 Heat of formation + Delta-G solvation = -14.601590 kcal Electronic energy + Delta-G solvation = -26163.072379 eV Core-core repulsion = 22237.875108 eV Total energy + Delta-G solvation = -3925.197271 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.03127 -40.86374 -38.72950 -38.07733 -34.60087 -34.18835 -32.33364 -31.36625 -30.19862 -29.73369 -27.64763 -27.47368 -25.38068 -24.19854 -23.26570 -21.63525 -21.29765 -20.17931 -19.17798 -17.99634 -17.71153 -16.93588 -16.75642 -16.39838 -16.27943 -15.92446 -14.99327 -14.91709 -14.71833 -14.24891 -14.07505 -13.90657 -13.81534 -13.54620 -13.37353 -13.08327 -13.04480 -12.94620 -12.71680 -12.50065 -12.31107 -12.07995 -11.96510 -11.56243 -11.16704 -10.96483 -10.94524 -10.67747 -10.37803 -10.04828 -9.71795 -9.21462 -9.19540 -8.96986 -8.88599 -8.64179 -8.11325 -6.37865 -6.12143 -3.81208 0.75640 1.95812 2.16006 2.60051 2.92271 3.18036 3.29919 3.32575 3.33969 3.40599 3.75838 3.99879 4.06515 4.30184 4.41276 4.44580 4.56166 4.64059 4.75833 4.81016 4.92376 5.00784 5.17428 5.22488 5.23692 5.28759 5.31048 5.35703 5.45058 5.57811 5.58827 5.62622 5.70040 5.84509 5.96332 6.05961 6.09561 6.35130 6.53149 6.81753 7.25979 7.68916 7.75875 7.95868 8.45039 8.83600 9.32857 10.95365 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012340 B = 0.002620 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.531891 B =10684.796908 C =12561.219312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.191 4.191 3 C -0.015 4.015 4 O -0.162 6.162 5 C -0.068 4.068 6 C 0.625 3.375 7 O -0.495 6.495 8 N -0.641 5.641 9 C 0.103 3.897 10 C -0.145 4.145 11 C 0.124 3.876 12 H 0.104 0.896 13 C 0.120 3.880 14 N -0.724 5.724 15 C 0.537 3.463 16 O -0.527 6.527 17 C -0.149 4.149 18 S -0.062 6.062 19 C -0.533 4.533 20 H 0.071 0.929 21 C 0.073 3.927 22 N -0.869 5.869 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.116 4.116 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.208 0.792 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.400 0.600 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.268 0.732 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.746 31.643 6.258 32.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.193 4.193 3 C -0.085 4.085 4 O -0.057 6.057 5 C -0.120 4.120 6 C 0.415 3.585 7 O -0.370 6.370 8 N -0.377 5.377 9 C -0.020 4.020 10 C -0.183 4.183 11 C 0.021 3.979 12 H 0.122 0.878 13 C -0.005 4.005 14 N -0.378 5.378 15 C 0.323 3.677 16 O -0.403 6.403 17 C -0.300 4.300 18 S 0.164 5.836 19 C -0.681 4.681 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.505 5.505 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.200 1.200 27 C -0.137 4.137 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.225 0.775 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.235 0.765 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.817 30.698 4.325 31.373 hybrid contribution -1.652 -0.562 2.446 3.005 sum -6.470 30.135 6.771 31.557 Atomic orbital electron populations 1.20200 0.88532 1.03017 1.02420 1.20517 0.97825 0.92375 1.08563 1.24185 0.80070 0.99990 1.04250 1.84072 1.29159 1.21750 1.70735 1.21947 0.95749 0.80444 1.13894 1.16044 0.79528 0.85986 0.76988 1.90985 1.84626 1.11604 1.49795 1.49632 1.04379 1.10265 1.73456 1.22943 0.93020 0.84933 1.01112 1.23423 0.98405 0.94815 1.01683 1.23086 0.79490 0.95198 1.00117 0.87807 1.21442 0.99797 0.83492 0.95797 1.45816 1.61982 1.06219 1.23811 1.20194 0.78280 0.83658 0.85564 1.90674 1.43222 1.85650 1.20716 1.23488 1.03864 0.98572 1.04065 1.85312 1.77645 0.94120 1.26499 1.22846 1.44119 0.94042 1.07093 0.91048 1.24985 0.95300 0.97809 0.95541 1.70017 1.42413 1.18498 1.19549 0.86234 0.79588 0.79699 0.80025 1.19965 1.20860 1.19991 1.21920 0.90473 1.00854 1.00449 0.91187 0.91437 0.91071 0.77521 0.89805 0.89356 0.88381 0.88028 0.91315 0.90200 0.76491 0.89574 0.89116 0.92240 0.82070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.39 36.01 0.37 -0.12 16 2 C -0.19 -1.61 6.14 -104.93 -0.64 -2.25 16 3 C -0.02 -0.11 12.00 29.63 0.36 0.25 16 4 O -0.16 -1.47 9.27 5.00 0.05 -1.43 16 5 C -0.07 -0.78 7.09 -36.80 -0.26 -1.05 16 6 C 0.63 8.12 7.94 -12.86 -0.10 8.02 16 7 O -0.49 -8.18 14.75 5.19 0.08 -8.10 16 8 N -0.64 -6.30 3.57 -179.15 -0.64 -6.94 16 9 C 0.10 0.59 7.78 -8.64 -0.07 0.53 16 10 C -0.14 -0.74 8.02 -26.34 -0.21 -0.95 16 11 C 0.12 1.04 4.08 -72.38 -0.30 0.75 16 12 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 13 C 0.12 1.52 5.36 -4.04 -0.02 1.50 16 14 N -0.72 -11.63 4.17 -60.29 -0.25 -11.88 16 15 C 0.54 11.38 7.85 -10.98 -0.09 11.30 16 16 O -0.53 -13.05 15.86 5.56 0.09 -12.96 16 17 C -0.15 -3.40 6.16 36.01 0.22 -3.18 16 18 S -0.06 -1.81 20.57 -107.50 -2.21 -4.02 16 19 C -0.53 -16.00 9.50 30.94 0.29 -15.71 16 20 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 21 C 0.07 2.16 5.49 -17.43 -0.10 2.06 16 22 N -0.87 -27.18 13.22 55.49 0.73 -26.45 16 23 Si 0.92 22.29 29.55 -169.99 -5.02 17.26 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 27 C -0.12 -1.28 10.57 -39.40 -0.42 -1.70 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.21 0.56 8.06 -52.49 -0.42 0.14 16 32 H 0.08 0.46 7.53 -51.93 -0.39 0.07 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.10 0.56 8.12 -51.93 -0.42 0.14 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.40 5.92 7.34 -40.82 -0.30 5.62 16 39 H 0.09 1.81 8.14 -51.91 -0.42 1.38 16 40 H 0.09 2.03 8.14 -51.92 -0.42 1.60 16 41 H 0.27 7.78 8.31 -40.82 -0.34 7.44 16 42 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -39.27 377.30 -8.18 -47.45 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.73 Total: 1.94 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -0.96 Total: -0.56 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -0.16 Total: -45.28 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: 0.21 Total: -22.48 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: -1.81 SS G_CDS: -2.21 Total: -4.02 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -39.27 -8.18 -47.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298983202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.848 kcal (2) G-P(sol) polarization free energy of solvation -39.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds