Wall clock time and date at job start Tue Mar 31 2020 20:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35135 * 126.43929 * 2 1 4 4 O 1.33926 * 108.76783 * 179.75425 * 3 2 1 5 5 C 1.34916 * 109.38238 * 0.37783 * 4 3 2 6 6 C 1.46656 * 125.98782 * 179.88655 * 5 4 3 7 7 O 1.21700 * 119.99976 * 179.41166 * 6 5 4 8 8 N 1.34777 * 119.99952 * 359.69455 * 6 5 4 9 9 C 1.47067 * 136.05761 * 359.62059 * 8 6 5 10 10 C 1.53241 * 88.08271 * 207.20667 * 9 8 6 11 11 C 1.47070 * 136.05847 * 179.97438 * 8 6 5 12 12 H 1.09000 * 113.46950 * 267.62471 * 11 8 6 13 13 C 1.53007 * 113.46621 * 38.05975 * 11 8 6 14 14 N 1.46498 * 109.47359 * 285.49516 * 13 11 8 15 15 C 1.34773 * 119.99760 * 179.97438 * 14 13 11 16 16 O 1.21279 * 120.00582 * 0.02562 * 15 14 13 17 17 C 1.50707 * 119.99567 * 180.02562 * 15 14 13 18 18 S 1.81005 * 109.46972 * 180.02562 * 17 15 14 19 19 C 1.76202 * 99.99859 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00179 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99779 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00319 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99842 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47236 * 59.99905 * 23 21 19 25 25 H 1.48495 * 109.47110 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47158 * 300.00050 * 23 21 19 27 27 C 1.36544 * 108.02440 * 359.62680 * 5 4 3 28 28 H 1.09001 * 109.46831 * 270.02142 * 1 2 3 29 29 H 1.09003 * 109.47641 * 30.01987 * 1 2 3 30 30 H 1.08996 * 109.47165 * 150.02724 * 1 2 3 31 31 H 1.08000 * 125.61543 * 0.02562 * 3 2 1 32 32 H 1.08991 * 113.46810 * 321.94488 * 9 8 6 33 33 H 1.09002 * 113.45982 * 92.38476 * 9 8 6 34 34 H 1.08997 * 114.32556 * 220.46648 * 10 9 8 35 35 H 1.09001 * 114.19426 * 87.73013 * 10 9 8 36 36 H 1.09004 * 109.46991 * 45.49956 * 13 11 8 37 37 H 1.09004 * 109.47067 * 165.49250 * 13 11 8 38 38 H 0.97000 * 119.99570 * 0.02562 * 14 13 11 39 39 H 1.09005 * 109.46831 * 300.00274 * 17 15 14 40 40 H 1.08991 * 109.47355 * 59.99805 * 17 15 14 41 41 H 0.96993 * 120.00071 * 179.97438 * 22 21 19 42 42 H 1.08001 * 126.64552 * 180.22707 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0871 0.0000 4 8 3.5857 0.6806 0.0054 5 6 3.6260 -0.6679 0.0006 6 6 4.8379 -1.4939 0.0018 7 8 4.7471 -2.7075 0.0078 8 7 6.0521 -0.9089 0.0019 9 6 6.5631 0.4701 -0.0056 10 6 7.8249 -0.0559 -0.6981 11 6 7.4491 -1.3687 0.0034 12 1 7.8737 -1.4639 1.0027 13 6 7.6829 -2.6098 -0.8603 14 7 7.1427 -3.7884 -0.1781 15 6 7.2352 -5.0026 -0.7556 16 8 7.7660 -5.1197 -1.8398 17 6 6.6790 -6.2149 -0.0541 18 16 6.9558 -7.6832 -1.0758 19 6 6.2301 -8.9143 -0.0451 20 1 5.7950 -8.6366 0.9035 21 6 6.2178 -10.2412 -0.4523 22 7 6.7487 -10.5799 -1.6083 23 14 5.4492 -11.5465 0.6407 24 1 4.0162 -11.2259 0.8620 25 1 5.5643 -12.8731 -0.0166 26 1 6.1566 -11.5785 1.9461 27 6 2.3408 -1.1291 0.0003 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5134 31 1 1.9769 2.1146 0.0004 32 1 5.9778 1.1465 -0.6284 33 1 6.7496 0.8692 0.9914 34 1 8.7525 0.3916 -0.3414 35 1 7.7549 -0.0939 -1.7852 36 1 7.1820 -2.4841 -1.8202 37 1 8.7525 -2.7427 -1.0234 38 1 6.7179 -3.6946 0.6888 39 1 7.1799 -6.3409 0.9059 40 1 5.6096 -6.0816 0.1090 41 1 6.7404 -11.5071 -1.8927 42 1 2.0267 -2.1624 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298983202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:12 Heat of formation + Delta-G solvation = -43.222519 kcal Electronic energy + Delta-G solvation = -26164.313476 eV Core-core repulsion = 22237.875108 eV Total energy + Delta-G solvation = -3926.438367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.71916 -41.65775 -40.33082 -38.98657 -35.63975 -35.20781 -34.61257 -32.25212 -31.48887 -30.64353 -28.76207 -28.11148 -27.65256 -24.94644 -24.07486 -22.36324 -21.96123 -21.73446 -20.08281 -19.70530 -18.64432 -17.94836 -17.71793 -17.54925 -17.27913 -17.01739 -16.90648 -16.47339 -16.08534 -15.72520 -15.13536 -14.97486 -14.62746 -14.57168 -14.46515 -14.16210 -13.99243 -13.94898 -13.66779 -13.53887 -13.30395 -13.20204 -13.01595 -12.88265 -12.66880 -12.60234 -12.48652 -11.93389 -11.72803 -11.29299 -11.15615 -10.92435 -10.77931 -10.33725 -10.09187 -9.96861 -9.53321 -8.70285 -8.36841 -6.15870 -0.01743 1.22994 1.29908 1.39614 1.41965 1.45527 1.55245 1.61381 1.92916 2.05290 2.24886 2.34158 2.96399 3.24144 3.32476 3.49469 3.69001 3.77707 3.94515 3.98738 4.01326 4.11981 4.20362 4.24306 4.35655 4.41675 4.45452 4.60513 4.65325 4.71829 4.81422 4.83741 4.98106 5.00188 5.01657 5.04529 5.27543 5.38086 5.43478 5.47350 5.84672 6.17098 6.45652 6.48896 6.89140 7.03274 7.22551 8.72585 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012340 B = 0.002620 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.531891 B =10684.796908 C =12561.219312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.209 4.209 3 C 0.008 3.992 4 O -0.158 6.158 5 C -0.092 4.092 6 C 0.615 3.385 7 O -0.551 6.551 8 N -0.645 5.645 9 C 0.104 3.896 10 C -0.124 4.124 11 C 0.121 3.879 12 H 0.130 0.870 13 C 0.115 3.885 14 N -0.700 5.700 15 C 0.535 3.465 16 O -0.570 6.570 17 C -0.126 4.126 18 S -0.145 6.145 19 C -0.550 4.550 20 H 0.079 0.921 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 1.001 2.999 24 H -0.264 1.264 25 H -0.274 1.274 26 H -0.261 1.261 27 C -0.136 4.136 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.257 0.743 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.136 0.864 35 H 0.095 0.905 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.409 0.591 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.273 0.727 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.173 34.741 8.375 36.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.211 4.211 3 C -0.061 4.061 4 O -0.053 6.053 5 C -0.144 4.144 6 C 0.405 3.595 7 O -0.431 6.431 8 N -0.380 5.380 9 C -0.017 4.017 10 C -0.162 4.162 11 C 0.019 3.981 12 H 0.148 0.852 13 C -0.009 4.009 14 N -0.353 5.353 15 C 0.321 3.679 16 O -0.449 6.449 17 C -0.277 4.277 18 S 0.082 5.918 19 C -0.698 4.698 20 H 0.097 0.903 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.822 3.178 24 H -0.189 1.189 25 H -0.199 1.199 26 H -0.185 1.185 27 C -0.157 4.157 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.272 0.728 32 H 0.107 0.893 33 H 0.133 0.867 34 H 0.154 0.846 35 H 0.114 0.886 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.245 0.755 39 H 0.125 0.875 40 H 0.111 0.889 41 H 0.082 0.918 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.219 33.895 6.470 34.900 hybrid contribution -1.540 -1.314 1.777 2.693 sum -6.758 32.581 8.247 34.281 Atomic orbital electron populations 1.20255 0.86866 1.03723 1.03114 1.20832 0.99110 0.91803 1.09315 1.25120 0.78789 1.01492 1.00700 1.84065 1.30349 1.20315 1.70563 1.21693 0.95229 0.81461 1.16033 1.16329 0.80810 0.85665 0.76649 1.90928 1.85658 1.13748 1.52745 1.49865 1.03899 1.12499 1.71725 1.23246 0.92644 0.82987 1.02839 1.23429 0.99770 0.91868 1.01182 1.23400 0.79255 0.94404 1.01077 0.85248 1.21703 0.99718 0.83885 0.95590 1.45663 1.60297 1.05601 1.23731 1.19938 0.78179 0.84728 0.85042 1.90652 1.45528 1.86356 1.22410 1.23317 1.04374 0.96425 1.03611 1.85433 1.78323 0.98132 1.29905 1.23162 1.44661 0.94641 1.07336 0.90332 1.26170 0.95446 1.00372 0.97150 1.70178 1.43550 1.19336 1.21624 0.84970 0.78779 0.76053 0.77955 1.18869 1.19894 1.18499 1.22063 0.91529 1.01152 1.00949 0.90460 0.89095 0.92030 0.72753 0.89287 0.86672 0.84625 0.88624 0.93745 0.89248 0.75488 0.87507 0.88867 0.91848 0.83849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.39 71.24 0.74 -0.11 16 2 C -0.21 -3.27 6.14 -20.06 -0.12 -3.39 16 3 C 0.01 0.09 12.00 67.10 0.81 0.90 16 4 O -0.16 -2.57 9.27 -5.01 -0.05 -2.61 16 5 C -0.09 -2.14 7.09 24.07 0.17 -1.97 16 6 C 0.61 16.38 7.94 86.44 0.69 17.07 16 7 O -0.55 -19.31 14.75 -4.35 -0.06 -19.37 16 8 N -0.65 -11.92 3.57 -838.93 -2.99 -14.91 16 9 C 0.10 0.86 7.78 83.09 0.65 1.51 16 10 C -0.12 -0.85 8.02 30.85 0.25 -0.60 16 11 C 0.12 1.79 4.08 41.80 0.17 1.96 16 12 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 13 C 0.12 2.91 5.36 86.38 0.46 3.37 16 14 N -0.70 -22.85 4.17 -463.04 -1.93 -24.78 16 15 C 0.54 23.50 7.85 87.66 0.69 24.18 16 16 O -0.57 -29.52 15.86 -3.03 -0.05 -29.57 16 17 C -0.13 -5.93 6.16 71.24 0.44 -5.49 16 18 S -0.15 -8.78 20.57 -56.49 -1.16 -9.94 16 19 C -0.55 -33.76 9.50 67.95 0.65 -33.12 16 20 H 0.08 4.53 7.80 -2.91 -0.02 4.51 16 21 C 0.01 0.80 5.49 84.86 0.47 1.27 16 22 N -0.91 -58.31 13.22 21.65 0.29 -58.03 16 23 Si 1.00 45.86 29.55 68.60 2.03 47.88 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 26 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 27 C -0.14 -3.14 10.57 22.39 0.24 -2.90 16 28 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.26 0.06 8.06 -2.91 -0.02 0.04 16 32 H 0.09 0.70 7.53 -2.39 -0.02 0.68 16 33 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.14 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.10 0.83 8.12 -2.39 -0.02 0.81 16 36 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.41 12.13 7.34 -92.71 -0.68 11.45 16 39 H 0.11 4.52 8.14 -2.39 -0.02 4.50 16 40 H 0.09 4.31 8.14 -2.40 -0.02 4.29 16 41 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 42 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -91.83 377.30 2.72 -89.12 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.37 Total: 19.53 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 6.28 Total: 2.69 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -4.64 Total: -97.71 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -0.16 Total: -51.55 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.94 kcal Total: -91.83 2.72 -89.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298983202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.893 kcal (2) G-P(sol) polarization free energy of solvation -91.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds