Wall clock time and date at job start Tue Mar 31 2020 20:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40364 * 126.64412 * 2 1 4 4 C 1.35123 * 107.11567 * 179.97438 * 3 2 1 5 5 O 1.33936 * 108.76473 * 359.76741 * 4 3 2 6 6 C 1.34910 * 109.38547 * 0.38352 * 5 4 3 7 7 C 1.46659 * 125.98591 * 179.88507 * 6 5 4 8 8 O 1.21695 * 119.99675 * 185.80067 * 7 6 5 9 9 N 1.34770 * 120.00168 * 5.80342 * 7 6 5 10 10 C 1.46506 * 119.99958 * 5.39200 * 9 7 6 11 11 C 1.46501 * 120.00325 * 185.39606 * 9 7 6 12 12 C 1.53490 * 114.20892 * 119.99567 * 11 9 7 13 13 N 1.47068 * 87.98630 * 87.52231 * 12 11 9 14 14 C 1.34776 * 136.06076 * 207.08599 * 13 12 11 15 15 O 1.21285 * 119.99505 * 359.97438 * 14 13 12 16 16 C 1.50694 * 120.00128 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.47078 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00118 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00451 * 359.97438 * 18 17 16 20 20 C 1.38799 * 120.00524 * 179.72554 * 18 17 16 21 21 N 1.31635 * 119.99590 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00626 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47227 * 89.99443 * 22 20 18 24 24 H 1.48493 * 109.47334 * 209.99968 * 22 20 18 25 25 H 1.48504 * 109.46774 * 329.99840 * 22 20 18 26 26 C 1.47067 * 87.88240 * 27.33969 * 13 12 11 27 27 H 1.09002 * 109.47384 * 270.04080 * 1 2 3 28 28 H 1.09004 * 109.47485 * 30.04013 * 1 2 3 29 29 H 1.08999 * 109.47255 * 150.04601 * 1 2 3 30 30 H 1.08001 * 126.44193 * 359.96262 * 3 2 1 31 31 H 1.07997 * 125.61742 * 180.02562 * 4 3 2 32 32 H 1.08994 * 109.46971 * 275.29691 * 10 9 7 33 33 H 1.09001 * 109.46830 * 35.30356 * 10 9 7 34 34 H 1.08999 * 109.46612 * 155.29652 * 10 9 7 35 35 H 1.08997 * 113.27742 * 346.92867 * 11 9 7 36 36 H 1.09007 * 113.46693 * 332.74235 * 12 11 9 37 37 H 1.09005 * 113.46753 * 202.30357 * 12 11 9 38 38 H 1.08995 * 109.47162 * 60.00063 * 16 14 13 39 39 H 1.09001 * 109.47238 * 300.00066 * 16 14 13 40 40 H 0.96997 * 120.00382 * 179.97438 * 21 20 18 41 41 H 1.09008 * 113.46451 * 87.43998 * 26 13 12 42 42 H 1.08997 * 113.47182 * 217.87791 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 0.0006 5 8 3.6004 -0.6647 0.0061 6 6 2.3220 -1.0955 0.0006 7 6 1.8843 -2.4953 0.0016 8 8 0.7025 -2.7633 -0.1103 9 7 2.7908 -3.4847 0.1264 10 6 4.1973 -3.1619 0.3794 11 6 2.3699 -4.8830 0.0091 12 6 3.0549 -5.6532 -1.1282 13 7 4.1385 -5.9754 -0.1876 14 6 5.4529 -6.2583 -0.2814 15 8 5.9918 -6.2831 -1.3677 16 6 6.2530 -6.5437 0.9633 17 16 7.9721 -6.8841 0.5108 18 6 8.6573 -7.1741 2.1079 19 1 8.0295 -7.1111 2.9845 20 6 10.0028 -7.4887 2.2393 21 7 10.7668 -7.5708 1.1705 22 14 10.7294 -7.7954 3.9325 23 1 10.6148 -9.2378 4.2665 24 1 12.1603 -7.3985 3.9365 25 1 9.9905 -6.9937 4.9408 26 6 3.1553 -5.8595 0.8999 27 1 -0.3634 0.0007 1.0277 28 1 -0.3634 0.8896 -0.5145 29 1 -0.3634 -0.8904 -0.5131 30 1 2.0306 2.1595 -0.0006 31 1 4.5045 1.2917 0.0011 32 1 4.6989 -2.9572 -0.5663 33 1 4.2586 -2.2829 1.0210 34 1 4.6807 -4.0056 0.8720 35 1 1.2883 -5.0120 0.0482 36 1 3.3721 -5.0165 -1.9542 37 1 2.4940 -6.5270 -1.4602 38 1 5.8331 -7.4100 1.4744 39 1 6.2164 -5.6784 1.6251 40 1 11.7072 -7.7902 1.2622 41 1 2.6209 -6.7877 1.1027 42 1 3.5579 -5.3986 1.8019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001299312802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:26 Heat of formation + Delta-G solvation = 3.167758 kcal Electronic energy + Delta-G solvation = -26654.250887 eV Core-core repulsion = 22729.824153 eV Total energy + Delta-G solvation = -3924.426734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.04865 -41.03970 -39.20382 -37.60308 -35.16508 -34.14630 -32.46911 -31.04152 -30.41470 -28.36368 -27.88829 -26.84783 -26.01151 -25.46838 -23.79598 -22.07808 -20.90677 -19.82104 -18.90677 -17.97503 -17.65986 -17.08609 -16.77562 -16.69192 -16.07543 -15.60929 -15.43728 -15.07607 -14.83913 -14.34613 -14.03276 -13.92439 -13.59456 -13.50423 -13.36797 -13.26218 -13.06068 -12.88879 -12.62284 -12.57348 -12.13008 -12.09810 -11.99959 -11.93777 -11.25689 -11.09191 -11.05658 -10.79713 -10.42279 -10.01396 -9.86619 -9.46496 -9.13637 -9.10529 -8.80857 -8.68380 -8.29098 -6.55558 -6.25582 -3.96941 0.74160 2.01354 2.27658 2.68032 2.73172 2.82748 3.00211 3.19581 3.21588 3.27186 3.50601 4.03804 4.15990 4.21603 4.43050 4.45214 4.54137 4.83975 4.95865 4.96690 5.09748 5.15996 5.19906 5.22252 5.25080 5.35394 5.42021 5.43123 5.46153 5.48992 5.57476 5.68772 5.78136 5.82098 5.85692 5.91602 6.06261 6.07791 6.18915 6.56879 6.97216 7.55602 7.69590 7.76681 8.31140 8.46631 9.19684 10.81816 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016009 B = 0.002579 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.627014 B =10854.439894 C =11776.032389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.085 4.085 3 C -0.228 4.228 4 C -0.002 4.002 5 O -0.155 6.155 6 C -0.087 4.087 7 C 0.609 3.391 8 O -0.520 6.520 9 N -0.585 5.585 10 C 0.076 3.924 11 C 0.105 3.895 12 C 0.093 3.907 13 N -0.653 5.653 14 C 0.561 3.439 15 O -0.511 6.511 16 C -0.146 4.146 17 S -0.059 6.059 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.092 3.908 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.155 0.845 31 H 0.210 0.790 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.132 0.868 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.269 0.731 41 H 0.101 0.899 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.827 14.883 -0.003 25.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.088 4.088 3 C -0.247 4.247 4 C -0.072 4.072 5 O -0.051 6.051 6 C -0.138 4.138 7 C 0.398 3.602 8 O -0.398 6.398 9 N -0.316 5.316 10 C -0.066 4.066 11 C 0.000 4.000 12 C -0.031 4.031 13 N -0.393 5.393 14 C 0.351 3.649 15 O -0.384 6.384 16 C -0.296 4.296 17 S 0.168 5.832 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.032 4.032 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.173 0.827 31 H 0.227 0.773 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.150 0.850 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.119 0.881 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.928 14.389 -1.769 24.643 hybrid contribution 0.115 0.032 2.364 2.367 sum -19.812 14.420 0.595 24.512 Atomic orbital electron populations 1.20452 0.88215 1.03776 1.02865 1.20645 0.97635 0.90974 0.99506 1.21745 0.92428 1.00145 1.10385 1.24490 1.00043 0.81079 1.01635 1.84317 1.28037 1.22320 1.70392 1.21661 0.81711 0.94456 1.15991 1.16580 0.85142 0.81863 0.76597 1.90823 1.15725 1.82246 1.51033 1.47303 1.09254 1.04829 1.70188 1.22040 0.79982 1.02204 1.02402 1.22385 1.00355 0.80083 0.97146 1.23370 0.86400 0.98396 0.94934 1.49822 1.06341 1.72487 1.10669 1.19944 0.78983 0.74902 0.91073 1.90731 1.68616 1.49678 1.29360 1.23494 1.03964 1.04427 0.97709 1.85433 0.94347 1.91145 1.12274 1.22844 0.97287 1.55501 0.92732 0.90933 1.24997 0.95950 0.94660 0.97961 1.70015 1.06593 1.45129 1.28493 0.86160 0.78259 0.78681 0.82361 1.20250 1.20721 1.19676 1.23423 0.88179 0.98556 0.93074 0.90852 0.91439 0.89300 0.82707 0.77317 0.91811 0.90341 0.89815 0.85018 0.90144 0.88622 0.89260 0.89457 0.92134 0.88069 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 9.89 36.01 0.36 -0.47 16 2 C -0.08 -0.84 6.20 -104.43 -0.65 -1.49 16 3 C -0.23 -1.79 10.83 -39.89 -0.43 -2.22 16 4 C 0.00 -0.02 12.08 29.62 0.36 0.34 16 5 O -0.16 -1.60 7.53 4.99 0.04 -1.56 16 6 C -0.09 -0.98 6.70 -36.80 -0.25 -1.22 16 7 C 0.61 7.33 7.63 -12.86 -0.10 7.23 16 8 O -0.52 -6.94 14.22 5.19 0.07 -6.86 16 9 N -0.58 -6.49 3.12 -175.11 -0.55 -7.03 16 10 C 0.08 0.87 8.51 59.85 0.51 1.38 16 11 C 0.11 1.01 4.70 -67.68 -0.32 0.69 16 12 C 0.09 1.03 8.24 -8.51 -0.07 0.96 16 13 N -0.65 -8.88 2.39 -185.09 -0.44 -9.33 16 14 C 0.56 10.50 7.50 -10.99 -0.08 10.42 16 15 O -0.51 -11.74 16.64 5.55 0.09 -11.65 16 16 C -0.15 -2.90 5.98 36.00 0.22 -2.68 16 17 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 18 C -0.54 -15.02 9.50 30.94 0.29 -14.73 16 19 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -25.89 13.22 55.49 0.73 -25.15 16 22 Si 0.92 21.14 29.55 -169.99 -5.02 16.12 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 C 0.09 0.87 7.44 -8.38 -0.06 0.81 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.89 6.34 -51.93 -0.33 0.56 16 30 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.21 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.83 5.97 -51.93 -0.31 0.52 16 34 H 0.08 1.02 5.02 -51.93 -0.26 0.76 16 35 H 0.13 1.11 7.26 -51.93 -0.38 0.73 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 39 H 0.09 1.59 8.11 -51.91 -0.42 1.17 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 41 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 42 H 0.08 0.78 7.36 -51.93 -0.38 0.40 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -36.06 368.55 -7.48 -43.54 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.43 Total: -0.83 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -0.32 Total: 0.99 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: -0.26 Total: -41.51 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: 0.20 Total: -20.08 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.06 -7.48 -43.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299312802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.712 kcal (2) G-P(sol) polarization free energy of solvation -36.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds