Wall clock time and date at job start Tue Mar 31 2020 20:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40364 * 126.64412 * 2 1 4 4 C 1.35123 * 107.11567 * 179.97438 * 3 2 1 5 5 O 1.33936 * 108.76473 * 359.76741 * 4 3 2 6 6 C 1.34910 * 109.38547 * 0.38352 * 5 4 3 7 7 C 1.46659 * 125.98591 * 179.88507 * 6 5 4 8 8 O 1.21695 * 119.99675 * 185.80067 * 7 6 5 9 9 N 1.34770 * 120.00168 * 5.80342 * 7 6 5 10 10 C 1.46506 * 119.99958 * 5.39200 * 9 7 6 11 11 C 1.46501 * 120.00325 * 185.39606 * 9 7 6 12 12 C 1.53490 * 114.20892 * 119.99567 * 11 9 7 13 13 N 1.47068 * 87.98630 * 87.52231 * 12 11 9 14 14 C 1.34776 * 136.06076 * 207.08599 * 13 12 11 15 15 O 1.21285 * 119.99505 * 359.97438 * 14 13 12 16 16 C 1.50694 * 120.00128 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.47078 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00118 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00451 * 359.97438 * 18 17 16 20 20 C 1.38799 * 120.00524 * 179.72554 * 18 17 16 21 21 N 1.31635 * 119.99590 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00626 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47227 * 89.99443 * 22 20 18 24 24 H 1.48493 * 109.47334 * 209.99968 * 22 20 18 25 25 H 1.48504 * 109.46774 * 329.99840 * 22 20 18 26 26 C 1.47067 * 87.88240 * 27.33969 * 13 12 11 27 27 H 1.09002 * 109.47384 * 270.04080 * 1 2 3 28 28 H 1.09004 * 109.47485 * 30.04013 * 1 2 3 29 29 H 1.08999 * 109.47255 * 150.04601 * 1 2 3 30 30 H 1.08001 * 126.44193 * 359.96262 * 3 2 1 31 31 H 1.07997 * 125.61742 * 180.02562 * 4 3 2 32 32 H 1.08994 * 109.46971 * 275.29691 * 10 9 7 33 33 H 1.09001 * 109.46830 * 35.30356 * 10 9 7 34 34 H 1.08999 * 109.46612 * 155.29652 * 10 9 7 35 35 H 1.08997 * 113.27742 * 346.92867 * 11 9 7 36 36 H 1.09007 * 113.46693 * 332.74235 * 12 11 9 37 37 H 1.09005 * 113.46753 * 202.30357 * 12 11 9 38 38 H 1.08995 * 109.47162 * 60.00063 * 16 14 13 39 39 H 1.09001 * 109.47238 * 300.00066 * 16 14 13 40 40 H 0.96997 * 120.00382 * 179.97438 * 21 20 18 41 41 H 1.09008 * 113.46451 * 87.43998 * 26 13 12 42 42 H 1.08997 * 113.47182 * 217.87791 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 0.0006 5 8 3.6004 -0.6647 0.0061 6 6 2.3220 -1.0955 0.0006 7 6 1.8843 -2.4953 0.0016 8 8 0.7025 -2.7633 -0.1103 9 7 2.7908 -3.4847 0.1264 10 6 4.1973 -3.1619 0.3794 11 6 2.3699 -4.8830 0.0091 12 6 3.0549 -5.6532 -1.1282 13 7 4.1385 -5.9754 -0.1876 14 6 5.4529 -6.2583 -0.2814 15 8 5.9918 -6.2831 -1.3677 16 6 6.2530 -6.5437 0.9633 17 16 7.9721 -6.8841 0.5108 18 6 8.6573 -7.1741 2.1079 19 1 8.0295 -7.1111 2.9845 20 6 10.0028 -7.4887 2.2393 21 7 10.7668 -7.5708 1.1705 22 14 10.7294 -7.7954 3.9325 23 1 10.6148 -9.2378 4.2665 24 1 12.1603 -7.3985 3.9365 25 1 9.9905 -6.9937 4.9408 26 6 3.1553 -5.8595 0.8999 27 1 -0.3634 0.0007 1.0277 28 1 -0.3634 0.8896 -0.5145 29 1 -0.3634 -0.8904 -0.5131 30 1 2.0306 2.1595 -0.0006 31 1 4.5045 1.2917 0.0011 32 1 4.6989 -2.9572 -0.5663 33 1 4.2586 -2.2829 1.0210 34 1 4.6807 -4.0056 0.8720 35 1 1.2883 -5.0120 0.0482 36 1 3.3721 -5.0165 -1.9542 37 1 2.4940 -6.5270 -1.4602 38 1 5.8331 -7.4100 1.4744 39 1 6.2164 -5.6784 1.6251 40 1 11.7072 -7.7902 1.2622 41 1 2.6209 -6.7877 1.1027 42 1 3.5579 -5.3986 1.8019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001299312802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:25 Heat of formation + Delta-G solvation = -20.602698 kcal Electronic energy + Delta-G solvation = -26655.281651 eV Core-core repulsion = 22729.824153 eV Total energy + Delta-G solvation = -3925.457498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.74346 -42.03048 -40.27180 -38.90374 -36.05875 -34.90677 -34.59474 -32.22291 -31.33274 -29.50097 -28.73674 -27.79508 -27.64820 -26.86419 -24.63750 -22.80278 -21.85864 -20.72550 -20.06868 -19.52714 -18.69606 -18.09210 -17.87078 -17.56168 -16.94247 -16.87747 -16.83955 -16.63110 -16.11498 -15.74366 -15.26263 -15.01901 -14.63276 -14.44022 -14.28753 -14.20426 -14.07652 -13.96464 -13.59256 -13.51529 -13.40347 -13.19952 -13.01416 -12.94457 -12.89862 -12.77009 -12.59766 -12.16277 -11.74837 -11.30857 -11.15124 -10.94923 -10.67027 -10.30106 -10.00555 -9.83647 -9.55172 -8.69288 -8.35553 -6.14316 -0.01950 1.18832 1.37924 1.41906 1.42206 1.48748 1.53956 1.56664 1.94793 1.95185 2.04497 2.26162 2.98764 3.15957 3.21313 3.44771 3.56715 3.80397 3.85525 3.92541 4.03426 4.12073 4.28187 4.37708 4.41368 4.45509 4.52332 4.54668 4.59860 4.63525 4.69370 4.71455 4.78492 4.81808 4.87988 5.12244 5.20878 5.28367 5.40894 5.49188 5.85772 6.11049 6.18902 6.54532 6.81837 7.05672 7.06607 8.73660 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016009 B = 0.002579 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.627014 B =10854.439894 C =11776.032389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.089 4.089 3 C -0.234 4.234 4 C 0.005 3.995 5 O -0.171 6.171 6 C -0.123 4.123 7 C 0.607 3.393 8 O -0.539 6.539 9 N -0.587 5.587 10 C 0.086 3.914 11 C 0.113 3.887 12 C 0.091 3.909 13 N -0.651 5.651 14 C 0.563 3.437 15 O -0.567 6.567 16 C -0.118 4.118 17 S -0.149 6.149 18 C -0.544 4.544 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.257 1.257 26 C 0.096 3.904 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.182 0.818 31 H 0.247 0.753 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.153 0.847 36 H 0.060 0.940 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.271 0.729 41 H 0.138 0.862 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.566 15.891 2.189 27.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.252 4.252 4 C -0.064 4.064 5 O -0.067 6.067 6 C -0.174 4.174 7 C 0.397 3.603 8 O -0.419 6.419 9 N -0.318 5.318 10 C -0.056 4.056 11 C 0.009 3.991 12 C -0.032 4.032 13 N -0.388 5.388 14 C 0.352 3.648 15 O -0.445 6.445 16 C -0.269 4.269 17 S 0.078 5.922 18 C -0.692 4.692 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.181 1.181 26 C -0.026 4.026 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.199 0.801 31 H 0.263 0.737 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.171 0.829 36 H 0.079 0.921 37 H 0.143 0.857 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.156 0.844 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.740 15.407 0.448 26.650 hybrid contribution 0.491 -0.143 1.631 1.709 sum -21.250 15.264 2.078 26.246 Atomic orbital electron populations 1.20462 0.87528 1.03869 1.03258 1.21039 0.98417 0.91469 0.98323 1.22088 0.92116 1.00852 1.10187 1.25329 1.01517 0.80229 0.99341 1.84290 1.27749 1.23802 1.70847 1.21646 0.82455 0.94489 1.18782 1.16736 0.84978 0.82416 0.76136 1.90800 1.16291 1.82722 1.52088 1.47375 1.08885 1.05461 1.70043 1.21880 0.80101 1.02218 1.01439 1.22449 1.01247 0.79225 0.96185 1.23673 0.85398 0.99552 0.94592 1.49739 1.05422 1.69959 1.13644 1.19595 0.80561 0.75001 0.89628 1.90706 1.70303 1.52713 1.30810 1.23275 0.99106 1.05794 0.98755 1.85626 1.00737 1.91670 1.14150 1.23170 0.97908 1.55331 0.92781 0.89905 1.26131 0.96387 0.94083 1.02534 1.70183 1.06995 1.46328 1.31272 0.84950 0.77322 0.78932 0.76767 1.19362 1.20321 1.18085 1.23785 0.86604 1.00138 0.92115 0.90231 0.89420 0.91073 0.80091 0.73744 0.93655 0.89521 0.90543 0.82924 0.92091 0.85658 0.87538 0.87599 0.91976 0.84417 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.50 9.89 71.24 0.70 -0.80 16 2 C -0.09 -1.68 6.20 -19.74 -0.12 -1.80 16 3 C -0.23 -3.15 10.83 22.07 0.24 -2.91 16 4 C 0.01 0.07 12.08 67.10 0.81 0.88 16 5 O -0.17 -3.39 7.53 -5.05 -0.04 -3.43 16 6 C -0.12 -2.71 6.70 24.07 0.16 -2.55 16 7 C 0.61 14.35 7.63 86.44 0.66 15.01 16 8 O -0.54 -14.08 14.22 -4.33 -0.06 -14.14 16 9 N -0.59 -12.56 3.12 -826.16 -2.57 -15.13 16 10 C 0.09 1.96 8.51 127.77 1.09 3.05 16 11 C 0.11 1.94 4.70 45.55 0.21 2.15 16 12 C 0.09 1.88 8.24 83.17 0.69 2.57 16 13 N -0.65 -16.85 2.39 -857.88 -2.05 -18.91 16 14 C 0.56 21.14 7.50 87.66 0.66 21.79 16 15 O -0.57 -27.10 16.64 -3.05 -0.05 -27.15 16 16 C -0.12 -4.68 5.98 71.23 0.43 -4.25 16 17 S -0.15 -8.24 20.57 -56.49 -1.16 -9.40 16 18 C -0.54 -30.69 9.50 67.95 0.65 -30.05 16 19 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 20 C 0.01 0.76 5.49 84.86 0.47 1.22 16 21 N -0.91 -55.65 13.22 21.65 0.29 -55.37 16 22 Si 1.00 43.06 29.55 68.60 2.03 45.08 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 24 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 26 C 0.10 1.53 7.44 83.26 0.62 2.15 16 27 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 1.40 6.34 -2.39 -0.02 1.39 16 30 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 31 H 0.25 1.04 8.06 -2.91 -0.02 1.02 16 32 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.81 5.97 -2.39 -0.01 1.80 16 34 H 0.08 1.82 5.02 -2.39 -0.01 1.81 16 35 H 0.15 2.13 7.26 -2.39 -0.02 2.11 16 36 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.13 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 39 H 0.11 3.76 8.11 -2.39 -0.02 3.74 16 40 H 0.27 15.37 8.31 -92.71 -0.77 14.59 16 41 H 0.14 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.09 1.42 7.36 -2.39 -0.02 1.40 16 Total: -1.00 -82.43 368.55 4.68 -77.75 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 1.05 Total: 14.24 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 7.25 Total: 6.46 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -4.34 Total: -89.41 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -0.15 Total: -44.73 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.40 kcal Total: -82.43 4.68 -77.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299312802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.149 kcal (2) G-P(sol) polarization free energy of solvation -82.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds