Wall clock time and date at job start Tue Mar 31 2020 20:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33385 * 122.53760 * 2 1 4 4 S 1.75884 * 109.59072 * 180.02562 * 3 2 1 5 5 C 1.75882 * 90.97262 * 359.83069 * 4 3 2 6 6 C 1.33389 * 109.59135 * 0.30369 * 5 4 3 7 7 C 1.50705 * 122.53826 * 179.90386 * 6 5 4 8 8 N 1.46495 * 109.46984 * 259.70709 * 7 6 5 9 9 C 1.34783 * 119.99827 * 180.02562 * 8 7 6 10 10 O 1.21348 * 119.99988 * 359.97438 * 9 8 7 11 11 C 1.49449 * 119.99799 * 180.02562 * 9 8 7 12 12 O 1.21351 * 120.00163 * 0.02562 * 11 9 8 13 13 N 1.34775 * 119.99970 * 179.97438 * 11 9 8 14 14 C 1.47021 * 125.64789 * 0.03799 * 13 11 9 15 15 C 1.54370 * 107.28813 * 181.05641 * 14 13 11 16 16 C 1.55147 * 102.92092 * 22.14333 * 15 14 13 17 17 O 1.42905 * 111.00578 * 82.63751 * 16 15 14 18 18 C 1.50702 * 111.00308 * 206.45025 * 16 15 14 19 19 H 1.08002 * 120.00299 * 356.82421 * 18 16 15 20 20 C 1.37884 * 119.99942 * 176.53980 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 C 1.47423 * 125.64985 * 179.97438 * 13 11 9 27 27 H 1.09000 * 109.47014 * 269.97329 * 1 2 3 28 28 H 1.09000 * 109.46861 * 29.97183 * 1 2 3 29 29 H 1.08997 * 109.47184 * 149.97519 * 1 2 3 30 30 H 1.08002 * 125.20871 * 359.97438 * 3 2 1 31 31 H 1.07995 * 125.20858 * 180.17839 * 5 4 3 32 32 H 1.09004 * 109.46710 * 139.70936 * 7 6 5 33 33 H 1.08993 * 109.47243 * 19.70960 * 7 6 5 34 34 H 0.96996 * 120.00455 * 359.97438 * 8 7 6 35 35 H 1.09001 * 109.88518 * 300.44553 * 14 13 11 36 36 H 1.09002 * 109.88165 * 61.60862 * 14 13 11 37 37 H 1.09001 * 110.70699 * 263.79361 * 15 14 13 38 38 H 1.09008 * 110.75075 * 140.51110 * 15 14 13 39 39 H 0.96701 * 113.99475 * 183.17547 * 17 16 15 40 40 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 41 41 H 1.08996 * 110.36708 * 37.06908 * 26 13 11 42 42 H 1.08999 * 110.36888 * 274.74656 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2245 1.1245 0.0000 4 16 3.9386 0.7304 -0.0007 5 6 3.5737 -0.9901 0.0042 6 6 2.2516 -1.1669 -0.0006 7 6 1.6166 -2.5337 -0.0003 8 7 1.1924 -2.8753 -1.3602 9 6 0.5946 -4.0588 -1.6023 10 8 0.4082 -4.8415 -0.6939 11 6 0.1623 -4.4076 -2.9898 12 8 0.3500 -3.6255 -3.8984 13 7 -0.4350 -5.5913 -3.2320 14 6 -0.7221 -6.6273 -2.2291 15 6 -1.3847 -7.8097 -2.9678 16 6 -0.9211 -7.6063 -4.4343 17 8 0.3871 -8.1445 -4.6374 18 6 -1.9066 -8.2105 -5.4012 19 1 -2.7675 -8.7469 -5.0302 20 6 -1.7124 -8.0735 -6.7594 21 7 -0.6641 -7.4203 -7.2111 22 14 -2.9381 -8.8158 -7.9576 23 1 -4.2792 -8.2219 -7.7254 24 1 -2.5044 -8.5312 -9.3491 25 1 -3.0048 -10.2849 -7.7512 26 6 -0.9098 -6.0610 -4.5462 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8897 -0.5142 30 1 1.8155 2.1241 -0.0004 31 1 4.3077 -1.7823 0.0083 32 1 0.7500 -2.5314 0.6609 33 1 2.3394 -3.2701 0.3506 34 1 1.3410 -2.2496 -2.0863 35 1 0.2052 -6.9566 -1.7603 36 1 -1.4023 -6.2336 -1.4738 37 1 -2.4706 -7.7500 -2.8948 38 1 -1.0226 -8.7608 -2.5772 39 1 0.7390 -7.9980 -5.5261 40 1 -0.5273 -7.3243 -8.1666 41 1 -0.2257 -5.7427 -5.3327 42 1 -1.9148 -5.6873 -4.7423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332248162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:40 Heat of formation + Delta-G solvation = -80.799542 kcal Electronic energy + Delta-G solvation = -26833.634489 eV Core-core repulsion = 22905.566660 eV Total energy + Delta-G solvation = -3928.067829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.43557 -39.25035 -38.20814 -37.16709 -34.84485 -34.02067 -32.21722 -31.47200 -30.22344 -28.90699 -27.91882 -26.56453 -25.47579 -23.60299 -22.58153 -21.62127 -19.89387 -19.57916 -18.40161 -17.99271 -17.27352 -17.08392 -16.56916 -15.82495 -15.56351 -15.24786 -15.04923 -14.49682 -14.48223 -14.21703 -13.95147 -13.56277 -13.32970 -13.05879 -13.01118 -12.86576 -12.64154 -12.34432 -12.28333 -12.11660 -11.88961 -11.65804 -11.52430 -11.13306 -11.08981 -11.04643 -10.78828 -10.56600 -10.51170 -10.21268 -9.39733 -9.30034 -9.24254 -9.00998 -8.70854 -8.62713 -8.42158 -7.89785 -6.31035 -4.40478 0.63027 1.31778 1.63688 1.79812 2.09189 2.86656 3.21194 3.26892 3.28858 3.60576 3.97567 4.25079 4.46267 4.52357 4.73305 4.88831 4.96726 5.04137 5.16380 5.21961 5.37060 5.42826 5.49302 5.64934 5.78810 5.79997 5.84824 6.05914 6.11210 6.15271 6.18813 6.33918 6.51178 6.72908 6.78989 6.83993 7.16270 7.24621 7.31155 7.71507 7.86474 7.99004 8.05027 8.44801 8.63271 9.28405 9.39178 10.76271 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.024910 B = 0.002293 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.765288 B =12207.626844 C =12484.005720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.088 4.088 3 C -0.219 4.219 4 S 0.103 5.897 5 C -0.186 4.186 6 C -0.122 4.122 7 C 0.182 3.818 8 N -0.703 5.703 9 C 0.511 3.489 10 O -0.516 6.516 11 C 0.508 3.492 12 O -0.538 6.538 13 N -0.573 5.573 14 C 0.112 3.888 15 C -0.122 4.122 16 C 0.249 3.751 17 O -0.582 6.582 18 C -0.537 4.537 19 H 0.068 0.932 20 C 0.071 3.929 21 N -0.895 5.895 22 Si 0.905 3.095 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.091 3.909 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.165 0.835 31 H 0.169 0.831 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.413 0.587 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.383 0.617 40 H 0.271 0.729 41 H 0.089 0.911 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.569 15.026 14.671 21.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.100 4.100 3 C -0.354 4.354 4 S 0.369 5.631 5 C -0.323 4.323 6 C -0.135 4.135 7 C 0.056 3.944 8 N -0.358 5.358 9 C 0.292 3.708 10 O -0.391 6.391 11 C 0.290 3.710 12 O -0.417 6.417 13 N -0.305 5.305 14 C -0.011 4.011 15 C -0.160 4.160 16 C 0.208 3.792 17 O -0.391 6.391 18 C -0.575 4.575 19 H 0.086 0.914 20 C -0.133 4.133 21 N -0.533 5.533 22 Si 0.733 3.267 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.030 4.030 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.183 0.817 31 H 0.186 0.814 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.249 0.751 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.234 0.766 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.953 15.685 15.321 23.002 hybrid contribution -1.626 -0.536 -1.601 2.344 sum 5.326 15.149 13.720 21.122 Atomic orbital electron populations 1.20599 0.89438 1.03364 1.02570 1.18828 0.97664 0.91347 1.02153 1.25429 0.95737 1.02383 1.11889 1.84313 1.06380 0.99980 1.72476 1.25628 0.99093 0.99627 1.07937 1.18795 0.92790 0.95544 1.06403 1.19916 0.99370 0.91223 0.83866 1.45800 1.60160 1.18865 1.10996 1.20439 0.78546 0.81942 0.89885 1.90731 1.53776 1.48649 1.45978 1.19548 0.80602 0.82494 0.88400 1.90729 1.56263 1.49064 1.45633 1.48645 1.54221 1.14739 1.12920 1.22153 1.00348 0.88192 0.90416 1.22726 0.99877 0.96841 0.96538 1.19622 0.82491 0.86553 0.90507 1.86110 1.33455 1.81461 1.38060 1.21444 1.09425 1.35908 0.90767 0.91399 1.25094 0.95625 0.93966 0.98585 1.69642 1.27748 1.40742 1.15211 0.86433 0.81084 0.79724 0.79498 1.20000 1.21087 1.19959 1.23510 0.99185 0.98412 0.81911 0.90953 0.91281 0.90947 0.81749 0.81388 0.89970 0.90214 0.75067 0.91163 0.91734 0.90379 0.90497 0.76602 0.91848 0.89306 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 9.60 36.01 0.35 -0.46 16 2 C -0.09 -0.78 5.80 -106.25 -0.62 -1.40 16 3 C -0.22 -1.75 10.98 29.04 0.32 -1.44 16 4 S 0.10 0.80 23.34 -107.50 -2.51 -1.71 16 5 C -0.19 -1.59 10.95 29.04 0.32 -1.27 16 6 C -0.12 -1.15 5.17 -106.25 -0.55 -1.70 16 7 C 0.18 1.91 5.12 -5.19 -0.03 1.88 16 8 N -0.70 -9.17 5.28 -61.91 -0.33 -9.50 16 9 C 0.51 8.50 7.86 -11.58 -0.09 8.41 16 10 O -0.52 -9.18 14.12 5.50 0.08 -9.10 16 11 C 0.51 10.15 7.91 -11.59 -0.09 10.05 16 12 O -0.54 -11.74 16.73 5.50 0.09 -11.65 16 13 N -0.57 -12.10 3.33 -170.98 -0.57 -12.66 16 14 C 0.11 2.14 5.49 -3.04 -0.02 2.13 16 15 C -0.12 -2.47 6.13 -24.88 -0.15 -2.62 16 16 C 0.25 6.00 0.88 -89.61 -0.08 5.92 16 17 O -0.58 -14.84 13.17 -35.23 -0.46 -15.30 16 18 C -0.54 -13.76 8.26 -34.44 -0.28 -14.05 16 19 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 20 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 21 N -0.89 -23.45 10.69 55.43 0.59 -22.86 16 22 Si 0.91 20.07 29.54 -169.99 -5.02 15.05 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 C 0.09 2.14 5.50 -2.52 -0.01 2.13 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.07 0.66 7.12 -51.93 -0.37 0.29 16 30 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.08 0.85 7.70 -51.93 -0.40 0.45 16 33 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.41 5.29 7.94 -40.82 -0.32 4.96 16 35 H 0.07 1.37 7.58 -51.93 -0.39 0.97 16 36 H 0.06 1.13 7.70 -51.93 -0.40 0.74 16 37 H 0.08 1.47 8.03 -51.93 -0.42 1.06 16 38 H 0.08 1.50 8.14 -51.92 -0.42 1.08 16 39 H 0.38 10.00 7.26 45.56 0.33 10.33 16 40 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.09 2.33 7.47 -51.93 -0.39 1.94 16 42 H 0.07 1.62 8.03 -51.93 -0.42 1.20 16 LS Contribution 365.93 15.07 5.51 5.51 Total: -1.00 -28.94 365.93 -8.50 -37.44 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -4.85 Total: 15.49 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -1.03 Total: 9.30 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: -0.30 Total: -45.03 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -0.29 Total: -36.06 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.51 Total: -1.71 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.94 -8.50 -37.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332248162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.359 kcal (2) G-P(sol) polarization free energy of solvation -28.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds