Wall clock time and date at job start Tue Mar 31 2020 20:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33385 * 122.53760 * 2 1 4 4 S 1.75884 * 109.59072 * 180.02562 * 3 2 1 5 5 C 1.75882 * 90.97262 * 359.83069 * 4 3 2 6 6 C 1.33389 * 109.59135 * 0.30369 * 5 4 3 7 7 C 1.50705 * 122.53826 * 179.90386 * 6 5 4 8 8 N 1.46495 * 109.46984 * 259.70709 * 7 6 5 9 9 C 1.34783 * 119.99827 * 180.02562 * 8 7 6 10 10 O 1.21348 * 119.99988 * 359.97438 * 9 8 7 11 11 C 1.49449 * 119.99799 * 180.02562 * 9 8 7 12 12 O 1.21351 * 120.00163 * 0.02562 * 11 9 8 13 13 N 1.34775 * 119.99970 * 179.97438 * 11 9 8 14 14 C 1.47021 * 125.64789 * 0.03799 * 13 11 9 15 15 C 1.54370 * 107.28813 * 181.05641 * 14 13 11 16 16 C 1.55147 * 102.92092 * 22.14333 * 15 14 13 17 17 O 1.42905 * 111.00578 * 82.63751 * 16 15 14 18 18 C 1.50702 * 111.00308 * 206.45025 * 16 15 14 19 19 H 1.08002 * 120.00299 * 356.82421 * 18 16 15 20 20 C 1.37884 * 119.99942 * 176.53980 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 C 1.47423 * 125.64985 * 179.97438 * 13 11 9 27 27 H 1.09000 * 109.47014 * 269.97329 * 1 2 3 28 28 H 1.09000 * 109.46861 * 29.97183 * 1 2 3 29 29 H 1.08997 * 109.47184 * 149.97519 * 1 2 3 30 30 H 1.08002 * 125.20871 * 359.97438 * 3 2 1 31 31 H 1.07995 * 125.20858 * 180.17839 * 5 4 3 32 32 H 1.09004 * 109.46710 * 139.70936 * 7 6 5 33 33 H 1.08993 * 109.47243 * 19.70960 * 7 6 5 34 34 H 0.96996 * 120.00455 * 359.97438 * 8 7 6 35 35 H 1.09001 * 109.88518 * 300.44553 * 14 13 11 36 36 H 1.09002 * 109.88165 * 61.60862 * 14 13 11 37 37 H 1.09001 * 110.70699 * 263.79361 * 15 14 13 38 38 H 1.09008 * 110.75075 * 140.51110 * 15 14 13 39 39 H 0.96701 * 113.99475 * 183.17547 * 17 16 15 40 40 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 41 41 H 1.08996 * 110.36708 * 37.06908 * 26 13 11 42 42 H 1.08999 * 110.36888 * 274.74656 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2245 1.1245 0.0000 4 16 3.9386 0.7304 -0.0007 5 6 3.5737 -0.9901 0.0042 6 6 2.2516 -1.1669 -0.0006 7 6 1.6166 -2.5337 -0.0003 8 7 1.1924 -2.8753 -1.3602 9 6 0.5946 -4.0588 -1.6023 10 8 0.4082 -4.8415 -0.6939 11 6 0.1623 -4.4076 -2.9898 12 8 0.3500 -3.6255 -3.8984 13 7 -0.4350 -5.5913 -3.2320 14 6 -0.7221 -6.6273 -2.2291 15 6 -1.3847 -7.8097 -2.9678 16 6 -0.9211 -7.6063 -4.4343 17 8 0.3871 -8.1445 -4.6374 18 6 -1.9066 -8.2105 -5.4012 19 1 -2.7675 -8.7469 -5.0302 20 6 -1.7124 -8.0735 -6.7594 21 7 -0.6641 -7.4203 -7.2111 22 14 -2.9381 -8.8158 -7.9576 23 1 -4.2792 -8.2219 -7.7254 24 1 -2.5044 -8.5312 -9.3491 25 1 -3.0048 -10.2849 -7.7512 26 6 -0.9098 -6.0610 -4.5462 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8897 -0.5142 30 1 1.8155 2.1241 -0.0004 31 1 4.3077 -1.7823 0.0083 32 1 0.7500 -2.5314 0.6609 33 1 2.3394 -3.2701 0.3506 34 1 1.3410 -2.2496 -2.0863 35 1 0.2052 -6.9566 -1.7603 36 1 -1.4023 -6.2336 -1.4738 37 1 -2.4706 -7.7500 -2.8948 38 1 -1.0226 -8.7608 -2.5772 39 1 0.7390 -7.9980 -5.5261 40 1 -0.5273 -7.3243 -8.1666 41 1 -0.2257 -5.7427 -5.3327 42 1 -1.9148 -5.6873 -4.7423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332248162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:39 Heat of formation + Delta-G solvation = -101.160361 kcal Electronic energy + Delta-G solvation = -26834.517400 eV Core-core repulsion = 22905.566660 eV Total energy + Delta-G solvation = -3928.950741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.84097 -40.34443 -39.45430 -38.84564 -36.35025 -35.44180 -34.19972 -32.17326 -31.94754 -29.85660 -29.57748 -27.79903 -26.87242 -25.10186 -23.52281 -22.91590 -21.55044 -21.05542 -19.43439 -19.11024 -18.64521 -18.41278 -17.99908 -17.26448 -17.05735 -16.78252 -16.34741 -16.12645 -15.73455 -15.36118 -14.94551 -14.77497 -14.66841 -14.64798 -14.25894 -13.96235 -13.92770 -13.52213 -13.49397 -13.32602 -12.99143 -12.84840 -12.81881 -12.69623 -12.55528 -12.52049 -12.32884 -12.25925 -12.10335 -11.73179 -11.22369 -10.76931 -10.59791 -10.39272 -10.31973 -9.72859 -9.63329 -9.27287 -8.25209 -6.41859 -0.02416 0.34094 0.69297 0.99382 1.16722 1.45694 1.46469 1.54344 1.71343 2.12142 2.38707 2.61392 3.00868 3.34265 3.74559 3.78420 3.88906 4.07808 4.15830 4.18863 4.33785 4.37694 4.51813 4.54566 4.66373 4.67933 4.74382 4.79228 4.96819 5.03137 5.06135 5.06891 5.13251 5.16426 5.34565 5.43867 5.48109 5.51234 5.75157 5.96817 6.05975 6.37058 6.60153 6.67579 6.91476 7.28795 7.36464 8.80455 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.024910 B = 0.002293 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.765288 B =12207.626844 C =12484.005720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.103 4.103 3 C -0.222 4.222 4 S 0.122 5.878 5 C -0.192 4.192 6 C -0.134 4.134 7 C 0.184 3.816 8 N -0.685 5.685 9 C 0.520 3.480 10 O -0.527 6.527 11 C 0.501 3.499 12 O -0.562 6.562 13 N -0.582 5.582 14 C 0.119 3.881 15 C -0.116 4.116 16 C 0.233 3.767 17 O -0.589 6.589 18 C -0.555 4.555 19 H 0.071 0.929 20 C 0.027 3.973 21 N -0.916 5.916 22 Si 0.966 3.034 23 H -0.269 1.269 24 H -0.286 1.286 25 H -0.271 1.271 26 C 0.104 3.896 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.183 0.817 31 H 0.181 0.819 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.415 0.585 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.376 0.624 40 H 0.271 0.729 41 H 0.055 0.945 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.351 15.759 16.031 23.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.115 4.115 3 C -0.357 4.357 4 S 0.388 5.612 5 C -0.329 4.329 6 C -0.147 4.147 7 C 0.059 3.941 8 N -0.338 5.338 9 C 0.300 3.700 10 O -0.404 6.404 11 C 0.285 3.715 12 O -0.443 6.443 13 N -0.313 5.313 14 C -0.003 4.003 15 C -0.153 4.153 16 C 0.192 3.808 17 O -0.397 6.397 18 C -0.593 4.593 19 H 0.089 0.911 20 C -0.174 4.174 21 N -0.555 5.555 22 Si 0.791 3.209 23 H -0.194 1.194 24 H -0.211 1.211 25 H -0.196 1.196 26 C -0.018 4.018 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.201 0.799 31 H 0.198 0.802 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.252 0.748 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.226 0.774 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.746 16.444 16.723 24.404 hybrid contribution -1.476 -0.660 -2.004 2.575 sum 5.270 15.784 14.719 22.216 Atomic orbital electron populations 1.20592 0.89025 1.03061 1.03105 1.18960 0.98154 0.91500 1.02838 1.25713 0.95893 1.03075 1.11036 1.84285 1.06139 0.99090 1.71719 1.25880 0.99170 1.00698 1.07127 1.18734 0.93162 0.95008 1.07827 1.20047 0.99776 0.92200 0.82036 1.45792 1.58301 1.17315 1.12363 1.19727 0.79336 0.83024 0.87932 1.90727 1.54854 1.49292 1.45497 1.20247 0.79684 0.81728 0.89877 1.90705 1.56926 1.49687 1.46944 1.48684 1.54721 1.15662 1.12270 1.22178 1.00702 0.87347 0.90047 1.22740 1.00887 0.97780 0.93930 1.19867 0.81658 0.86524 0.92710 1.86103 1.34371 1.81730 1.37510 1.21749 1.09892 1.36190 0.91505 0.91079 1.25825 0.97127 0.94292 1.00141 1.69755 1.28986 1.41461 1.15312 0.85487 0.79140 0.78963 0.77314 1.19415 1.21123 1.19594 1.23088 0.97747 0.98459 0.82520 0.90023 0.90392 0.92411 0.79948 0.80213 0.89449 0.89668 0.74821 0.91224 0.89538 0.88845 0.89654 0.77439 0.91981 0.92626 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 9.60 71.24 0.68 -0.74 16 2 C -0.10 -1.66 5.80 -20.92 -0.12 -1.78 16 3 C -0.22 -3.10 10.98 66.72 0.73 -2.36 16 4 S 0.12 1.65 23.34 -56.49 -1.32 0.33 16 5 C -0.19 -2.94 10.95 66.72 0.73 -2.21 16 6 C -0.13 -2.30 5.17 -20.92 -0.11 -2.41 16 7 C 0.18 3.58 5.12 85.64 0.44 4.02 16 8 N -0.68 -17.12 5.28 -468.14 -2.47 -19.59 16 9 C 0.52 16.83 7.86 87.27 0.69 17.52 16 10 O -0.53 -17.96 14.12 -3.24 -0.05 -18.01 16 11 C 0.50 20.06 7.91 87.27 0.69 20.75 16 12 O -0.56 -24.94 16.73 -3.25 -0.05 -24.99 16 13 N -0.58 -24.57 3.33 -813.23 -2.70 -27.28 16 14 C 0.12 4.44 5.49 86.75 0.48 4.92 16 15 C -0.12 -4.56 6.13 31.80 0.19 -4.37 16 16 C 0.23 11.28 0.88 -10.14 -0.01 11.28 16 17 O -0.59 -30.53 13.17 -148.98 -1.96 -32.49 16 18 C -0.56 -28.48 8.26 25.60 0.21 -28.27 16 19 H 0.07 3.51 7.78 -2.91 -0.02 3.49 16 20 C 0.03 1.39 5.29 84.66 0.45 1.84 16 21 N -0.92 -48.97 10.69 21.45 0.23 -48.74 16 22 Si 0.97 41.07 29.54 68.60 2.03 43.10 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 24 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 26 C 0.10 5.03 5.50 86.86 0.48 5.51 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 0.96 8.12 -2.39 -0.02 0.94 16 29 H 0.06 1.00 7.12 -2.39 -0.02 0.98 16 30 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 31 H 0.18 2.21 8.06 -2.91 -0.02 2.18 16 32 H 0.09 1.66 7.70 -2.39 -0.02 1.64 16 33 H 0.09 1.61 8.07 -2.39 -0.02 1.59 16 34 H 0.42 10.29 7.94 -92.71 -0.74 9.55 16 35 H 0.07 2.62 7.58 -2.39 -0.02 2.60 16 36 H 0.09 2.86 7.70 -2.39 -0.02 2.84 16 37 H 0.09 3.37 8.03 -2.39 -0.02 3.35 16 38 H 0.08 3.20 8.14 -2.38 -0.02 3.18 16 39 H 0.38 20.27 7.26 -74.06 -0.54 19.74 16 40 H 0.27 13.91 8.31 -92.70 -0.77 13.14 16 41 H 0.06 3.03 7.47 -2.39 -0.02 3.02 16 42 H 0.06 2.86 8.03 -2.39 -0.02 2.84 16 Total: -1.00 -61.58 365.93 -0.97 -62.54 By element: Atomic # 1 Polarization: 41.63 SS G_CDS: -0.20 Total: 41.43 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: 5.53 Total: 23.69 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -4.95 Total: -95.61 kcal Atomic # 8 Polarization: -73.42 SS G_CDS: -2.06 Total: -75.48 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -1.32 Total: 0.33 kcal Total: -61.58 -0.97 -62.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332248162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.616 kcal (2) G-P(sol) polarization free energy of solvation -61.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds