Wall clock time and date at job start Tue Mar 31 2020 21:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47183 * 2 1 4 4 C 1.53002 * 109.47373 * 240.00000 * 2 1 3 5 5 O 1.45200 * 109.47537 * 119.99918 * 2 1 3 6 6 C 1.34754 * 117.00018 * 60.00038 * 5 2 1 7 7 O 1.21519 * 119.99747 * 0.02562 * 6 5 2 8 8 C 1.47375 * 120.00285 * 180.02562 * 6 5 2 9 9 C 1.40040 * 120.60714 * 5.52358 * 8 6 5 10 10 C 1.38317 * 118.34822 * 180.26145 * 9 8 6 11 11 C 1.38392 * 119.49078 * 359.44447 * 10 9 8 12 12 N 1.31853 * 121.21451 * 0.30134 * 11 10 9 13 13 C 1.32335 * 121.79121 * 359.97154 * 12 11 10 14 14 N 1.38776 * 119.81707 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99508 * 354.44073 * 14 13 12 16 16 O 1.21258 * 120.00452 * 359.97438 * 15 14 13 17 17 C 1.50707 * 119.99590 * 180.02562 * 15 14 13 18 18 S 1.80996 * 109.46958 * 179.97438 * 17 15 14 19 19 C 1.76199 * 99.99991 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00060 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00044 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99690 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99984 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47245 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47445 * 119.99724 * 23 21 19 26 26 H 1.48504 * 109.47211 * 240.00067 * 23 21 19 27 27 H 1.08997 * 109.46722 * 299.99689 * 1 2 3 28 28 H 1.08992 * 109.47156 * 59.99985 * 1 2 3 29 29 H 1.08999 * 109.46539 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47480 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47447 * 300.00095 * 3 2 1 32 32 H 1.09006 * 109.47317 * 59.99983 * 3 2 1 33 33 H 1.09000 * 109.46874 * 299.99846 * 4 2 1 34 34 H 1.08999 * 109.46756 * 60.00211 * 4 2 1 35 35 H 1.08998 * 109.46952 * 179.97438 * 4 2 1 36 36 H 1.07991 * 120.82232 * 0.02562 * 9 8 6 37 37 H 1.08007 * 120.25204 * 179.71943 * 10 9 8 38 38 H 1.07998 * 119.40006 * 180.27379 * 11 10 9 39 39 H 0.97002 * 120.00278 * 174.43698 * 14 13 12 40 40 H 1.08998 * 109.46661 * 299.99891 * 17 15 14 41 41 H 1.09006 * 109.47140 * 59.99867 * 17 15 14 42 42 H 0.97004 * 119.99324 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0141 -0.6844 1.1855 6 6 1.6521 -1.9734 1.3385 7 8 0.9514 -2.5108 0.5037 8 6 2.1059 -2.7313 2.5181 9 6 2.8162 -2.0957 3.5440 10 6 3.2244 -2.8529 4.6271 11 6 2.9130 -4.2006 4.6723 12 7 2.2385 -4.7791 3.6981 13 6 1.8286 -4.1031 2.6369 14 7 1.1209 -4.7532 1.6356 15 6 0.9495 -6.0889 1.6902 16 8 1.4140 -6.7226 2.6138 17 6 0.1815 -6.7950 0.6026 18 16 0.1260 -8.5689 0.9575 19 6 -0.8031 -9.1298 -0.4306 20 1 -1.1462 -8.4232 -1.1719 21 6 -1.0952 -10.4795 -0.5708 22 7 -0.6775 -11.3405 0.3330 23 14 -2.0796 -11.0741 -2.0427 24 1 -2.4269 -9.9168 -2.9061 25 1 -1.2698 -12.0466 -2.8197 26 1 -3.3254 -11.7314 -1.5722 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6768 -1.7489 -1.2492 34 1 1.6768 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2494 36 1 3.0429 -1.0412 3.4890 37 1 3.7780 -2.3950 5.4336 38 1 3.2285 -4.7895 5.5208 39 1 0.7496 -4.2463 0.8966 40 1 -0.8338 -6.4006 0.5602 41 1 0.6750 -6.6317 -0.3555 42 1 -0.8813 -12.2837 0.2348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332593353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:21 Heat of formation + Delta-G solvation = -68.029932 kcal Electronic energy + Delta-G solvation = -26594.056276 eV Core-core repulsion = 22666.542178 eV Total energy + Delta-G solvation = -3927.514097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.54738 -40.36823 -38.74693 -37.38166 -34.75517 -34.42373 -32.72161 -32.42012 -30.90864 -28.82292 -27.79359 -27.73467 -25.51939 -25.27869 -23.90463 -22.32826 -20.59327 -19.99034 -18.26568 -17.94162 -17.62719 -17.14139 -16.58280 -16.38283 -15.60994 -15.36971 -15.18731 -14.92153 -14.79234 -14.67764 -14.04285 -13.95668 -13.88209 -13.39718 -13.31645 -12.87198 -12.82473 -12.58175 -12.57064 -12.30773 -12.28582 -12.12152 -11.83807 -11.56385 -11.06115 -11.01288 -10.78542 -10.76075 -10.73825 -10.40662 -10.12655 -10.05829 -9.81245 -9.06439 -8.98580 -8.42734 -8.24315 -6.49943 -6.21009 -3.91637 0.32008 1.08239 2.22123 2.27205 2.80625 3.00016 3.22904 3.26448 3.32289 3.55707 3.75759 4.13890 4.20657 4.31218 4.37663 4.39329 4.49937 4.52557 4.72593 4.84167 5.10498 5.12734 5.14428 5.17876 5.23194 5.32511 5.36985 5.47883 5.48257 5.54073 5.63625 5.69540 5.80651 5.86689 5.91583 5.94759 6.02959 6.13912 6.24666 6.62807 7.26501 7.46647 7.61480 7.95618 8.36740 8.51816 9.24541 10.86513 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013187 B = 0.002854 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.793973 B = 9809.816025 C =11729.370576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.118 3.882 3 C -0.140 4.140 4 C -0.185 4.185 5 O -0.343 6.343 6 C 0.531 3.469 7 O -0.511 6.511 8 C -0.242 4.242 9 C 0.013 3.987 10 C -0.233 4.233 11 C 0.179 3.821 12 N -0.482 5.482 13 C 0.440 3.560 14 N -0.654 5.654 15 C 0.516 3.484 16 O -0.444 6.444 17 C -0.152 4.152 18 S -0.056 6.056 19 C -0.535 4.535 20 H 0.074 0.926 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.920 3.080 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.167 0.833 39 H 0.429 0.571 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.370 28.138 3.213 29.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.082 3.918 3 C -0.197 4.197 4 C -0.242 4.242 5 O -0.259 6.259 6 C 0.378 3.622 7 O -0.401 6.401 8 C -0.250 4.250 9 C -0.013 4.013 10 C -0.255 4.255 11 C 0.018 3.982 12 N -0.197 5.197 13 C 0.205 3.795 14 N -0.312 5.312 15 C 0.302 3.698 16 O -0.311 6.311 17 C -0.303 4.303 18 S 0.171 5.829 19 C -0.683 4.683 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.184 0.816 39 H 0.279 0.721 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.639 25.804 4.418 27.271 hybrid contribution -1.180 1.528 -2.485 3.147 sum 6.459 27.332 1.933 28.152 Atomic orbital electron populations 1.22513 0.93726 1.05077 1.02863 1.22257 0.94619 0.92194 0.82752 1.21857 1.02275 0.92423 1.03185 1.22518 1.01796 1.03384 0.96525 1.86579 1.69623 1.24277 1.45461 1.20674 0.76478 0.80380 0.84624 1.90442 1.36922 1.69143 1.43621 1.19470 1.13954 0.93266 0.98330 1.21645 0.89076 1.00347 0.90260 1.22012 1.06841 0.95731 1.00910 1.23129 0.88190 0.92171 0.94718 1.68049 1.13866 1.37055 1.00717 1.18592 0.87186 0.86100 0.87616 1.44812 1.51899 1.09619 1.24825 1.20756 0.80512 0.80786 0.87772 1.90793 1.43414 1.64237 1.32609 1.23559 1.02088 1.05319 0.99295 1.85388 1.72093 0.91204 1.34214 1.22908 1.39792 0.95668 1.09912 0.90762 1.24998 0.95858 0.95600 0.97161 1.70030 1.43582 1.02901 1.33748 0.86100 0.79341 0.78722 0.81233 1.19583 1.20563 1.20564 0.91937 0.90844 0.89536 0.91395 0.90168 0.91423 0.89523 0.90835 0.91900 0.83395 0.83946 0.81588 0.72103 0.88759 0.88788 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 8.37 37.16 0.31 -1.20 16 2 C 0.12 0.96 1.13 -90.62 -0.10 0.86 16 3 C -0.14 -0.78 8.85 37.16 0.33 -0.45 16 4 C -0.19 -1.56 8.37 37.16 0.31 -1.25 16 5 O -0.34 -3.38 9.22 -40.64 -0.37 -3.75 16 6 C 0.53 6.29 7.19 34.45 0.25 6.54 16 7 O -0.51 -6.68 9.21 -19.28 -0.18 -6.86 16 8 C -0.24 -2.98 5.90 -104.67 -0.62 -3.60 16 9 C 0.01 0.12 9.73 -38.88 -0.38 -0.26 16 10 C -0.23 -1.97 10.09 -39.50 -0.40 -2.36 16 11 C 0.18 2.03 11.17 -17.49 -0.20 1.83 16 12 N -0.48 -7.86 7.88 -12.11 -0.10 -7.96 16 13 C 0.44 6.89 7.43 -154.80 -1.15 5.74 16 14 N -0.65 -11.05 5.26 -11.23 -0.06 -11.10 16 15 C 0.52 10.58 7.81 -10.98 -0.09 10.49 16 16 O -0.44 -10.52 14.12 5.58 0.08 -10.44 16 17 C -0.15 -3.24 6.16 36.01 0.22 -3.02 16 18 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 19 C -0.53 -15.42 9.50 30.94 0.29 -15.13 16 20 H 0.07 2.04 7.80 -52.48 -0.41 1.63 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 23 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.90 5.88 -51.93 -0.31 0.59 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.92 5.88 -51.93 -0.31 0.62 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.15 0.95 7.71 -52.49 -0.40 0.54 16 37 H 0.14 0.71 8.06 -52.48 -0.42 0.28 16 38 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.43 6.56 5.21 -40.92 -0.21 6.34 16 40 H 0.09 1.86 8.14 -51.92 -0.42 1.44 16 41 H 0.09 1.86 8.14 -51.91 -0.42 1.43 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 367.74 15.07 5.54 5.54 Total: -1.00 -35.63 367.74 -8.32 -43.95 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.42 Total: 3.16 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.31 Total: 0.19 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.58 Total: -44.68 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.47 Total: -21.05 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.63 -8.32 -43.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332593353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.079 kcal (2) G-P(sol) polarization free energy of solvation -35.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds