Wall clock time and date at job start Tue Mar 31 2020 21:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47183 * 2 1 4 4 C 1.53002 * 109.47373 * 240.00000 * 2 1 3 5 5 O 1.45200 * 109.47537 * 119.99918 * 2 1 3 6 6 C 1.34754 * 117.00018 * 60.00038 * 5 2 1 7 7 O 1.21519 * 119.99747 * 0.02562 * 6 5 2 8 8 C 1.47375 * 120.00285 * 180.02562 * 6 5 2 9 9 C 1.40040 * 120.60714 * 5.52358 * 8 6 5 10 10 C 1.38317 * 118.34822 * 180.26145 * 9 8 6 11 11 C 1.38392 * 119.49078 * 359.44447 * 10 9 8 12 12 N 1.31853 * 121.21451 * 0.30134 * 11 10 9 13 13 C 1.32335 * 121.79121 * 359.97154 * 12 11 10 14 14 N 1.38776 * 119.81707 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99508 * 354.44073 * 14 13 12 16 16 O 1.21258 * 120.00452 * 359.97438 * 15 14 13 17 17 C 1.50707 * 119.99590 * 180.02562 * 15 14 13 18 18 S 1.80996 * 109.46958 * 179.97438 * 17 15 14 19 19 C 1.76199 * 99.99991 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00060 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00044 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99690 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99984 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47245 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47445 * 119.99724 * 23 21 19 26 26 H 1.48504 * 109.47211 * 240.00067 * 23 21 19 27 27 H 1.08997 * 109.46722 * 299.99689 * 1 2 3 28 28 H 1.08992 * 109.47156 * 59.99985 * 1 2 3 29 29 H 1.08999 * 109.46539 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47480 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47447 * 300.00095 * 3 2 1 32 32 H 1.09006 * 109.47317 * 59.99983 * 3 2 1 33 33 H 1.09000 * 109.46874 * 299.99846 * 4 2 1 34 34 H 1.08999 * 109.46756 * 60.00211 * 4 2 1 35 35 H 1.08998 * 109.46952 * 179.97438 * 4 2 1 36 36 H 1.07991 * 120.82232 * 0.02562 * 9 8 6 37 37 H 1.08007 * 120.25204 * 179.71943 * 10 9 8 38 38 H 1.07998 * 119.40006 * 180.27379 * 11 10 9 39 39 H 0.97002 * 120.00278 * 174.43698 * 14 13 12 40 40 H 1.08998 * 109.46661 * 299.99891 * 17 15 14 41 41 H 1.09006 * 109.47140 * 59.99867 * 17 15 14 42 42 H 0.97004 * 119.99324 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0141 -0.6844 1.1855 6 6 1.6521 -1.9734 1.3385 7 8 0.9514 -2.5108 0.5037 8 6 2.1059 -2.7313 2.5181 9 6 2.8162 -2.0957 3.5440 10 6 3.2244 -2.8529 4.6271 11 6 2.9130 -4.2006 4.6723 12 7 2.2385 -4.7791 3.6981 13 6 1.8286 -4.1031 2.6369 14 7 1.1209 -4.7532 1.6356 15 6 0.9495 -6.0889 1.6902 16 8 1.4140 -6.7226 2.6138 17 6 0.1815 -6.7950 0.6026 18 16 0.1260 -8.5689 0.9575 19 6 -0.8031 -9.1298 -0.4306 20 1 -1.1462 -8.4232 -1.1719 21 6 -1.0952 -10.4795 -0.5708 22 7 -0.6775 -11.3405 0.3330 23 14 -2.0796 -11.0741 -2.0427 24 1 -2.4269 -9.9168 -2.9061 25 1 -1.2698 -12.0466 -2.8197 26 1 -3.3254 -11.7314 -1.5722 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6768 -1.7489 -1.2492 34 1 1.6768 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2494 36 1 3.0429 -1.0412 3.4890 37 1 3.7780 -2.3950 5.4336 38 1 3.2285 -4.7895 5.5208 39 1 0.7496 -4.2463 0.8966 40 1 -0.8338 -6.4006 0.5602 41 1 0.6750 -6.6317 -0.3555 42 1 -0.8813 -12.2837 0.2348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332593353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:20 Heat of formation + Delta-G solvation = -90.416002 kcal Electronic energy + Delta-G solvation = -26595.027008 eV Core-core repulsion = 22666.542178 eV Total energy + Delta-G solvation = -3928.484830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.51074 -41.37147 -40.06033 -38.23049 -35.97453 -35.22615 -34.61352 -33.60983 -32.16063 -30.25733 -28.37917 -28.29226 -27.71060 -26.18928 -24.97660 -23.19382 -21.88141 -20.85149 -19.93171 -19.10261 -18.76989 -18.22094 -17.75168 -17.28637 -16.90869 -16.75173 -16.56222 -16.34943 -15.95351 -15.60315 -15.44681 -15.03080 -14.92398 -14.59095 -14.55185 -14.14655 -13.71542 -13.63587 -13.34058 -13.19236 -13.15571 -12.95397 -12.92997 -12.88939 -12.64150 -12.53270 -12.23038 -11.97650 -11.76198 -11.46107 -11.44189 -11.21646 -11.18053 -11.05193 -10.35913 -10.18918 -9.49602 -8.71266 -8.37482 -6.16333 -0.60538 0.18270 1.14988 1.35319 1.40185 1.40240 1.45649 1.52468 1.55234 1.94639 2.23656 2.78391 2.96738 3.12776 3.33131 3.50143 3.58011 3.71943 3.78221 3.86279 3.94298 3.98709 4.16191 4.16514 4.39181 4.45861 4.59294 4.61264 4.76903 4.81252 4.84495 4.89179 4.89778 5.03493 5.11330 5.17707 5.26746 5.27198 5.39733 5.41200 5.59755 6.08695 6.17765 6.58200 6.79464 7.03652 7.16848 8.72166 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013187 B = 0.002854 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.793973 B = 9809.816025 C =11729.370576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.109 3.891 3 C -0.135 4.135 4 C -0.185 4.185 5 O -0.336 6.336 6 C 0.530 3.470 7 O -0.527 6.527 8 C -0.240 4.240 9 C 0.018 3.982 10 C -0.200 4.200 11 C 0.158 3.842 12 N -0.532 5.532 13 C 0.402 3.598 14 N -0.648 5.648 15 C 0.521 3.479 16 O -0.487 6.487 17 C -0.129 4.129 18 S -0.136 6.136 19 C -0.548 4.548 20 H 0.082 0.918 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 1.001 2.999 24 H -0.258 1.258 25 H -0.272 1.272 26 H -0.272 1.272 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.185 0.815 37 H 0.191 0.809 38 H 0.188 0.812 39 H 0.434 0.566 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.829 31.638 2.743 32.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.074 3.926 3 C -0.192 4.192 4 C -0.242 4.242 5 O -0.252 6.252 6 C 0.378 3.622 7 O -0.419 6.419 8 C -0.247 4.247 9 C -0.007 4.007 10 C -0.221 4.221 11 C 0.000 4.000 12 N -0.248 5.248 13 C 0.169 3.831 14 N -0.307 5.307 15 C 0.307 3.693 16 O -0.357 6.357 17 C -0.281 4.281 18 S 0.091 5.909 19 C -0.696 4.696 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.546 5.546 23 Si 0.823 3.177 24 H -0.182 1.182 25 H -0.197 1.197 26 H -0.197 1.197 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.202 0.798 37 H 0.208 0.792 38 H 0.205 0.795 39 H 0.285 0.715 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.128 29.382 3.975 30.743 hybrid contribution -1.216 0.681 -2.236 2.635 sum 6.911 30.063 1.739 30.896 Atomic orbital electron populations 1.22497 0.93864 1.03691 1.04015 1.22571 0.94695 0.93452 0.81896 1.21879 1.02587 0.90287 1.04453 1.22509 1.01922 1.02125 0.97642 1.86571 1.69304 1.23050 1.46286 1.20687 0.76204 0.81023 0.84289 1.90435 1.37666 1.69616 1.44169 1.19614 1.13776 0.91954 0.99399 1.22138 0.87530 1.01955 0.89096 1.22488 1.04285 0.94105 1.01181 1.23650 0.87953 0.94090 0.94331 1.67888 1.15469 1.39345 1.02064 1.18740 0.89098 0.87417 0.87850 1.44470 1.52401 1.08084 1.25741 1.20486 0.79984 0.82012 0.86823 1.90765 1.45479 1.65455 1.34015 1.23375 1.03596 1.00615 1.00467 1.85507 1.72592 0.97240 1.35531 1.23230 1.39972 0.96423 1.09980 0.90002 1.26144 0.96842 0.95593 1.00512 1.70185 1.44977 1.03413 1.36050 0.84874 0.77527 0.78404 0.76933 1.18190 1.19730 1.19743 0.91399 0.89113 0.92128 0.90914 0.88378 0.90706 0.92158 0.89068 0.91649 0.79760 0.79219 0.79545 0.71524 0.87191 0.87217 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 8.37 71.98 0.60 -2.12 16 2 C 0.11 1.56 1.13 -10.79 -0.01 1.55 16 3 C -0.14 -1.06 8.85 71.98 0.64 -0.43 16 4 C -0.18 -2.87 8.37 71.98 0.60 -2.27 16 5 O -0.34 -5.91 9.22 -56.64 -0.52 -6.44 16 6 C 0.53 12.12 7.19 70.23 0.50 12.62 16 7 O -0.53 -13.95 9.21 19.78 0.18 -13.77 16 8 C -0.24 -5.65 5.90 -19.90 -0.12 -5.77 16 9 C 0.02 0.27 9.73 22.73 0.22 0.49 16 10 C -0.20 -2.64 10.09 22.33 0.23 -2.41 16 11 C 0.16 3.40 11.17 84.73 0.95 4.34 16 12 N -0.53 -17.76 7.88 -192.22 -1.51 -19.27 16 13 C 0.40 12.83 7.43 133.48 0.99 13.82 16 14 N -0.65 -22.77 5.26 -307.85 -1.62 -24.39 16 15 C 0.52 22.42 7.81 87.66 0.68 23.11 16 16 O -0.49 -24.47 14.12 -2.96 -0.04 -24.51 16 17 C -0.13 -5.72 6.16 71.24 0.44 -5.28 16 18 S -0.14 -7.84 20.57 -56.49 -1.16 -9.00 16 19 C -0.55 -32.30 9.50 67.96 0.65 -31.66 16 20 H 0.08 4.52 7.80 -2.91 -0.02 4.50 16 21 C 0.01 0.81 5.49 84.86 0.47 1.28 16 22 N -0.91 -56.76 13.22 21.65 0.29 -56.47 16 23 Si 1.00 44.62 29.55 68.60 2.03 46.65 16 24 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.24 5.88 -2.39 -0.01 1.23 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.06 1.28 5.88 -2.39 -0.01 1.27 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.19 1.43 7.71 -2.92 -0.02 1.41 16 37 H 0.19 0.75 8.06 -2.91 -0.02 0.73 16 38 H 0.19 2.94 8.06 -2.91 -0.02 2.92 16 39 H 0.43 13.77 5.21 -94.24 -0.49 13.28 16 40 H 0.11 4.46 8.14 -2.40 -0.02 4.44 16 41 H 0.11 4.45 8.14 -2.39 -0.02 4.43 16 42 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -82.73 367.74 5.04 -77.69 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.56 Total: 22.24 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 6.84 Total: 7.28 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -2.85 Total: -100.14 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -0.38 Total: -44.71 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: -7.84 SS G_CDS: -1.16 Total: -9.00 kcal Total: -82.73 5.04 -77.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332593353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.723 kcal (2) G-P(sol) polarization free energy of solvation -82.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds