Wall clock time and date at job start Tue Mar 31 2020 20:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.46862 * 2 1 4 4 C 1.35136 * 125.62005 * 90.00023 * 3 2 1 5 5 C 1.40362 * 107.11382 * 180.29958 * 4 3 2 6 6 C 1.36540 * 106.70990 * 359.57420 * 5 4 3 7 7 C 1.46659 * 125.98809 * 180.15316 * 6 5 4 8 8 O 1.21698 * 119.99878 * 0.29396 * 7 6 5 9 9 N 1.34773 * 119.99972 * 180.29870 * 7 6 5 10 10 C 1.47065 * 136.06017 * 359.62417 * 9 7 6 11 11 C 1.53751 * 87.88750 * 152.96994 * 10 9 7 12 12 N 1.46502 * 114.26828 * 139.79838 * 11 10 9 13 13 C 1.34773 * 120.00242 * 111.47056 * 12 11 10 14 14 O 1.21281 * 120.00271 * 0.02562 * 13 12 11 15 15 C 1.50707 * 120.00056 * 180.02562 * 13 12 11 16 16 S 1.81000 * 109.47325 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99734 * 179.97438 * 16 15 13 18 18 H 1.07993 * 120.00044 * 359.97438 * 17 16 15 19 19 C 1.38803 * 119.99430 * 179.97438 * 17 16 15 20 20 N 1.31628 * 120.00232 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99577 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47399 * 90.00461 * 21 19 17 23 23 H 1.48505 * 109.47138 * 210.00034 * 21 19 17 24 24 H 1.48501 * 109.47573 * 330.00376 * 21 19 17 25 25 C 1.47074 * 136.05821 * 180.02562 * 9 7 6 26 26 O 1.33930 * 125.61534 * 270.03953 * 3 2 1 27 27 H 1.09003 * 109.46733 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47086 * 299.99897 * 1 2 3 29 29 H 1.08993 * 109.47211 * 60.00229 * 1 2 3 30 30 H 1.08994 * 109.47437 * 240.00055 * 2 1 3 31 31 H 1.09002 * 109.46996 * 119.99640 * 2 1 3 32 32 H 1.08002 * 126.43745 * 0.03088 * 4 3 2 33 33 H 1.08007 * 126.64273 * 179.74161 * 5 4 3 34 34 H 1.09003 * 113.47026 * 267.69956 * 10 9 7 35 35 H 1.09005 * 113.46631 * 38.13919 * 10 9 7 36 36 H 1.09007 * 114.39663 * 272.67314 * 11 10 9 37 37 H 0.97004 * 119.99478 * 291.47720 * 12 11 10 38 38 H 1.09003 * 109.46674 * 300.00728 * 15 13 12 39 39 H 1.09003 * 109.46725 * 59.99695 * 15 13 12 40 40 H 0.97002 * 119.99658 * 179.97438 * 20 19 17 41 41 H 1.09005 * 113.46160 * 321.86006 * 25 9 7 42 42 H 1.08996 * 113.46696 * 92.29610 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2946 2.1629 1.0985 5 6 2.7316 3.4201 0.6530 6 6 2.7228 3.3779 -0.7117 7 6 3.1083 4.4710 -1.6103 8 8 3.4829 5.5335 -1.1501 9 7 3.0475 4.2989 -2.9456 10 6 2.6698 3.2079 -3.8566 11 6 2.3002 4.2796 -4.8952 12 7 2.6891 3.9471 -6.2680 13 6 1.7433 3.6825 -7.1910 14 8 0.5703 3.7201 -6.8853 15 6 2.1434 3.3399 -8.6030 16 16 0.6592 3.0406 -9.5949 17 6 1.4001 2.6738 -11.1510 18 1 2.4751 2.6845 -11.2531 19 6 0.6019 2.3711 -12.2454 20 7 -0.7085 2.3585 -12.1210 21 14 1.3872 1.9829 -13.8952 22 1 1.6418 0.5230 -13.9911 23 1 0.4726 2.3987 -14.9889 24 1 2.6715 2.7184 -14.0175 25 6 3.3365 5.1171 -4.1330 26 8 2.2916 2.1564 -1.0888 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.1842 1.8490 2.1260 33 1 3.0216 4.2577 1.2702 34 1 3.5107 2.5832 -4.1579 35 1 1.8162 2.6268 -3.5075 36 1 1.2785 4.6510 -4.8149 37 1 3.6273 3.9173 -6.5126 38 1 2.7060 4.1689 -9.0325 39 1 2.7641 2.4439 -8.5975 40 1 -1.2662 2.1473 -12.8860 41 1 3.0509 6.1630 -4.0194 42 1 4.3530 4.9954 -4.5071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356743866.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:39 Heat of formation + Delta-G solvation = -19.204800 kcal Electronic energy + Delta-G solvation = -25464.805463 eV Core-core repulsion = 21539.408582 eV Total energy + Delta-G solvation = -3925.396881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.07048 -40.83328 -39.10012 -37.92048 -34.70734 -33.83609 -33.23443 -32.46482 -30.61445 -29.36854 -28.03873 -26.43598 -25.53157 -24.63979 -22.81159 -21.95199 -21.09406 -20.65798 -19.87009 -18.09133 -17.88533 -17.06608 -16.76119 -16.57746 -16.28687 -15.86140 -15.06118 -14.91943 -14.83582 -14.75130 -14.20527 -14.08880 -13.64631 -13.53998 -13.33626 -13.29697 -13.24647 -13.03230 -12.81434 -12.57035 -12.47530 -12.08868 -12.02950 -11.53506 -11.34485 -11.09441 -11.06153 -10.81128 -10.66115 -10.38683 -9.86227 -9.55018 -9.27628 -9.12422 -9.06902 -8.82183 -8.29149 -6.54843 -6.25391 -3.96469 0.69001 1.95004 2.06795 2.46960 2.80018 2.88892 3.02537 3.19947 3.25875 3.29658 3.64213 3.87857 4.11020 4.16693 4.30552 4.49656 4.53770 4.62916 4.73304 4.77496 4.94632 4.99194 5.05622 5.10057 5.17054 5.18167 5.26336 5.33443 5.35462 5.38523 5.51641 5.52024 5.62685 5.74881 5.80282 5.82154 6.00013 6.07089 6.40896 6.55382 7.16930 7.51636 7.56341 7.65073 8.31491 8.44784 9.20124 10.81979 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017516 B = 0.002007 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.196699 B =13946.432411 C =15084.079542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.049 4.049 3 C 0.026 3.974 4 C -0.223 4.223 5 C -0.115 4.115 6 C -0.077 4.077 7 C 0.636 3.364 8 O -0.520 6.520 9 N -0.637 5.637 10 C 0.085 3.915 11 C 0.119 3.881 12 N -0.725 5.725 13 C 0.536 3.464 14 O -0.511 6.511 15 C -0.154 4.154 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.098 3.902 26 O -0.156 6.156 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.134 0.866 37 H 0.403 0.597 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.269 0.731 41 H 0.091 0.909 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.075 -2.540 24.989 26.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.086 4.086 3 C -0.027 4.027 4 C -0.242 4.242 5 C -0.135 4.135 6 C -0.129 4.129 7 C 0.427 3.573 8 O -0.398 6.398 9 N -0.372 5.372 10 C -0.040 4.040 11 C 0.011 3.989 12 N -0.380 5.380 13 C 0.323 3.677 14 O -0.384 6.384 15 C -0.305 4.305 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.025 4.025 26 O -0.052 6.052 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.174 0.826 33 H 0.178 0.822 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.152 0.848 37 H 0.237 0.763 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.109 0.891 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.097 -1.975 25.551 26.591 hybrid contribution 2.447 -0.332 -1.277 2.780 sum 9.544 -2.307 24.274 26.185 Atomic orbital electron populations 1.21807 0.93282 1.02868 1.03004 1.20239 0.96874 0.86833 1.04667 1.22935 1.00498 0.95123 0.84104 1.21579 1.08585 0.94178 0.99851 1.21936 1.00037 0.98844 0.92714 1.21807 1.11382 0.85505 0.94196 1.15883 0.77476 0.85088 0.78895 1.90901 1.48530 1.25525 1.74854 1.49058 1.66034 1.18947 1.03151 1.23773 1.01069 0.92248 0.86872 1.22676 1.00580 0.94916 0.80723 1.45820 1.10167 1.73240 1.08746 1.20408 0.85565 0.75271 0.86491 1.90720 1.17817 1.49233 1.80664 1.23542 1.07591 1.04564 0.94765 1.85423 1.02951 1.90613 1.04301 1.22856 0.95224 1.54988 0.95361 0.90870 1.24998 0.94771 0.94770 0.99060 1.70013 1.03318 1.45472 1.31428 0.86163 0.78976 0.78716 0.81611 1.20264 1.20748 1.19683 1.23420 0.99691 0.97979 0.81407 1.84067 1.64381 1.21926 1.34817 0.91165 0.92037 0.91880 0.89505 0.88405 0.82603 0.82186 0.88938 0.89224 0.84799 0.76259 0.88973 0.89004 0.92144 0.89070 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.89 37.16 0.37 -0.45 16 2 C -0.05 -0.26 6.47 -27.88 -0.18 -0.45 16 3 C 0.03 0.22 6.57 -35.41 -0.23 -0.01 16 4 C -0.22 -1.80 10.77 -39.89 -0.43 -2.23 16 5 C -0.11 -1.14 10.62 -39.40 -0.42 -1.56 16 6 C -0.08 -0.89 7.09 -36.80 -0.26 -1.15 16 7 C 0.64 8.19 8.04 -12.86 -0.10 8.09 16 8 O -0.52 -8.03 17.64 5.19 0.09 -7.93 16 9 N -0.64 -6.96 3.69 -186.65 -0.69 -7.65 16 10 C 0.08 0.82 7.64 -8.38 -0.06 0.75 16 11 C 0.12 1.23 4.62 -67.68 -0.31 0.92 16 12 N -0.73 -8.11 5.39 -53.48 -0.29 -8.40 16 13 C 0.54 8.98 7.85 -10.98 -0.09 8.90 16 14 O -0.51 -10.72 15.45 5.56 0.09 -10.63 16 15 C -0.15 -2.86 6.16 36.01 0.22 -2.64 16 16 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 17 C -0.54 -14.83 9.50 30.94 0.29 -14.53 16 18 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 19 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 20 N -0.87 -25.66 13.22 55.49 0.73 -24.93 16 21 Si 0.92 20.96 29.55 -169.99 -5.02 15.94 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 C 0.10 0.88 8.38 -8.51 -0.07 0.81 16 26 O -0.16 -1.66 9.25 5.00 0.05 -1.62 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.16 1.42 8.06 -52.48 -0.42 0.99 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.92 7.50 -51.93 -0.39 0.53 16 36 H 0.13 1.66 7.45 -51.93 -0.39 1.27 16 37 H 0.40 3.20 8.76 -40.82 -0.36 2.85 16 38 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 39 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.09 0.64 8.13 -51.93 -0.42 0.22 16 LS Contribution 382.53 15.07 5.76 5.76 Total: -1.00 -36.03 382.53 -8.61 -44.64 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.75 Total: 0.18 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -1.37 Total: -1.61 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: -0.24 Total: -40.97 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: 0.22 Total: -20.18 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.03 -8.61 -44.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356743866.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.436 kcal (2) G-P(sol) polarization free energy of solvation -36.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds