Wall clock time and date at job start Tue Mar 31 2020 20:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40359 * 126.64711 * 2 1 4 4 C 1.35131 * 107.11799 * 179.97438 * 3 2 1 5 5 O 1.33934 * 108.76298 * 359.76896 * 4 3 2 6 6 C 1.34915 * 109.38564 * 0.38090 * 5 4 3 7 7 C 1.46658 * 125.98490 * 179.88702 * 6 5 4 8 8 O 1.21699 * 119.99513 * 179.69322 * 7 6 5 9 9 N 1.34771 * 120.00042 * 359.69084 * 7 6 5 10 10 C 1.46505 * 119.99611 * 180.02562 * 9 7 6 11 11 C 1.53009 * 109.46831 * 174.96827 * 10 9 7 12 12 N 1.46495 * 115.54715 * 85.77478 * 11 10 9 13 13 C 1.34779 * 120.00375 * 65.40694 * 12 11 10 14 14 O 1.21283 * 119.99626 * 354.97760 * 13 12 11 15 15 C 1.50700 * 120.00262 * 174.97499 * 13 12 11 16 16 S 1.81006 * 109.46951 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99857 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99846 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00231 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99666 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00450 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46982 * 59.99762 * 21 19 17 23 23 H 1.48491 * 109.47305 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46901 * 299.99969 * 21 19 17 25 25 C 1.52993 * 117.49722 * 231.44326 * 11 10 9 26 26 C 1.52997 * 117.49928 * 300.10289 * 11 10 9 27 27 H 1.09002 * 109.46909 * 270.03929 * 1 2 3 28 28 H 1.08999 * 109.47266 * 30.04205 * 1 2 3 29 29 H 1.08994 * 109.47133 * 150.04449 * 1 2 3 30 30 H 1.08005 * 126.44144 * 359.96667 * 3 2 1 31 31 H 1.07999 * 125.61616 * 180.02562 * 4 3 2 32 32 H 0.96999 * 120.00486 * 359.97438 * 9 7 6 33 33 H 1.08998 * 109.47545 * 54.97056 * 10 9 7 34 34 H 1.08996 * 109.46839 * 294.96726 * 10 9 7 35 35 H 0.97002 * 119.99938 * 245.40447 * 12 11 10 36 36 H 1.08999 * 109.47302 * 300.00003 * 15 13 12 37 37 H 1.08998 * 109.46945 * 60.00407 * 15 13 12 38 38 H 0.97004 * 119.99765 * 180.02562 * 20 19 17 39 39 H 1.09005 * 117.49813 * 215.00448 * 25 11 10 40 40 H 1.08997 * 117.50305 * 0.02987 * 25 11 10 41 41 H 1.08999 * 117.49998 * 359.97438 * 26 11 10 42 42 H 1.09000 * 117.49970 * 144.97302 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3448 1.1261 0.0000 4 6 3.6184 0.6744 0.0006 5 8 3.6005 -0.6648 0.0060 6 6 2.3220 -1.0956 0.0006 7 6 1.8843 -2.4953 0.0016 8 8 0.6968 -2.7614 0.0019 9 7 2.7971 -3.4868 0.0022 10 6 2.3598 -4.8851 0.0026 11 6 3.5791 -5.8008 -0.1233 12 7 4.2509 -6.1349 1.1349 13 6 3.6106 -6.8689 2.0665 14 8 2.4486 -7.1756 1.9035 15 6 4.3386 -7.3086 3.3106 16 16 3.2182 -8.2709 4.3569 17 6 4.2974 -8.6438 5.6989 18 1 5.3172 -8.2883 5.6866 19 6 3.8373 -9.3951 6.7714 20 7 2.5945 -9.8287 6.7862 21 14 4.9816 -9.7910 8.1938 22 1 5.4526 -8.5278 8.8165 23 1 4.2535 -10.5992 9.2046 24 1 6.1483 -10.5602 7.6912 25 6 3.5473 -6.8735 -1.2138 26 6 4.4513 -5.6483 -1.3711 27 1 -0.3633 0.0007 1.0277 28 1 -0.3634 0.8896 -0.5145 29 1 -0.3633 -0.8903 -0.5131 30 1 2.0307 2.1595 -0.0005 31 1 4.5047 1.2916 0.0011 32 1 3.7436 -3.2747 0.0015 33 1 1.6885 -5.0561 -0.8390 34 1 1.8372 -5.1019 0.9342 35 1 5.1565 -5.8280 1.2975 36 1 5.1941 -7.9242 3.0326 37 1 4.6845 -6.4319 3.8581 38 1 2.2728 -10.3535 7.5359 39 1 4.0263 -7.8279 -0.9950 40 1 2.6580 -6.9266 -1.8418 41 1 4.1563 -4.8959 -2.1025 42 1 5.5250 -5.7962 -1.2557 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358647265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:21 Heat of formation + Delta-G solvation = -32.030183 kcal Electronic energy + Delta-G solvation = -25893.703461 eV Core-core repulsion = 21967.750430 eV Total energy + Delta-G solvation = -3925.953031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.01076 -40.17670 -39.20712 -37.37492 -34.83914 -33.98702 -32.78764 -32.43473 -30.85882 -29.10259 -28.40028 -26.73459 -25.49248 -23.22803 -22.79320 -21.68087 -21.28242 -20.28603 -19.61977 -18.43751 -17.87082 -16.83573 -16.64733 -16.40287 -16.30543 -15.79730 -15.21508 -14.96176 -14.81082 -14.57211 -14.33265 -14.00445 -13.69136 -13.35554 -13.32636 -13.29279 -12.86268 -12.81968 -12.78148 -12.46640 -12.07497 -12.00159 -11.78575 -11.08200 -11.05626 -11.03986 -10.80258 -10.66668 -10.25307 -10.02989 -9.83884 -9.52974 -9.25316 -9.07612 -8.98543 -8.85373 -8.25517 -6.51164 -6.22289 -3.93213 0.77395 2.01720 2.37457 2.84748 2.90730 2.96426 3.01279 3.22750 3.25145 3.28607 3.54007 3.64440 4.19444 4.29523 4.34698 4.45702 4.58838 4.60179 4.72582 5.05410 5.12744 5.15701 5.21153 5.31737 5.32492 5.41411 5.48913 5.51047 5.66475 5.69324 5.73059 5.83207 5.85144 5.86801 5.91352 6.05927 6.10293 6.19725 6.52259 6.59438 7.23877 7.58023 7.61970 7.88354 8.33944 8.55786 9.22763 10.85030 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.002346 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.283554 B =11932.777163 C =12785.323157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.086 4.086 3 C -0.225 4.225 4 C -0.005 4.005 5 O -0.164 6.164 6 C -0.085 4.085 7 C 0.601 3.399 8 O -0.514 6.514 9 N -0.715 5.715 10 C 0.149 3.851 11 C 0.088 3.912 12 N -0.710 5.710 13 C 0.535 3.465 14 O -0.505 6.505 15 C -0.153 4.153 16 S -0.057 6.057 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.156 4.156 26 C -0.170 4.170 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.156 0.844 31 H 0.210 0.790 32 H 0.404 0.596 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.400 0.600 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.666 20.311 -18.920 28.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 C -0.244 4.244 4 C -0.075 4.075 5 O -0.060 6.060 6 C -0.137 4.137 7 C 0.388 3.612 8 O -0.392 6.392 9 N -0.366 5.366 10 C 0.025 3.975 11 C 0.000 4.000 12 N -0.365 5.365 13 C 0.321 3.679 14 O -0.378 6.378 15 C -0.304 4.304 16 S 0.170 5.830 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.195 4.195 26 C -0.208 4.208 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.173 0.827 31 H 0.227 0.773 32 H 0.238 0.762 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.235 0.765 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.952 19.221 -19.065 27.234 hybrid contribution 3.136 0.639 1.302 3.455 sum 6.088 19.861 -17.763 27.332 Atomic orbital electron populations 1.20449 0.88116 1.03600 1.03139 1.20679 0.97783 0.90984 0.99491 1.21762 0.92462 1.00200 1.10002 1.24357 0.99979 0.80594 1.02558 1.84051 1.28361 1.22732 1.70853 1.21881 0.81491 0.94802 1.15492 1.16500 0.85781 0.81760 0.77197 1.90883 1.15635 1.82256 1.50418 1.45890 1.09862 1.06195 1.74607 1.21173 0.94190 0.77396 1.04719 1.20623 0.96439 1.01451 0.81512 1.45438 1.18286 1.56464 1.16288 1.20370 0.87157 0.76744 0.83613 1.90713 1.16074 1.53779 1.77190 1.23536 1.04672 1.04739 0.97435 1.85429 1.15175 1.64784 1.17644 1.22820 0.99592 1.39848 1.06268 0.91002 1.24992 0.95608 0.94953 0.98018 1.70009 1.14780 1.34059 1.31376 0.86224 0.80087 0.78518 0.80670 1.19951 1.20789 1.19940 1.23370 1.01968 0.94242 0.99919 1.23336 0.98148 1.01546 0.97746 0.90601 0.91487 0.89397 0.82658 0.77336 0.76175 0.89852 0.88881 0.76461 0.89183 0.89283 0.92095 0.87756 0.87688 0.87658 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.94 9.82 36.01 0.35 -0.58 16 2 C -0.09 -0.91 6.20 -104.43 -0.65 -1.55 16 3 C -0.23 -1.75 10.83 -39.89 -0.43 -2.18 16 4 C -0.01 -0.03 12.08 29.63 0.36 0.32 16 5 O -0.16 -1.54 10.40 4.98 0.05 -1.49 16 6 C -0.08 -0.97 7.13 -36.80 -0.26 -1.23 16 7 C 0.60 7.85 7.79 -12.86 -0.10 7.75 16 8 O -0.51 -8.23 14.73 5.19 0.08 -8.15 16 9 N -0.71 -7.91 5.44 -61.62 -0.34 -8.25 16 10 C 0.15 1.89 5.63 -4.03 -0.02 1.87 16 11 C 0.09 0.97 1.79 -131.82 -0.24 0.74 16 12 N -0.71 -8.86 5.45 -47.61 -0.26 -9.12 16 13 C 0.53 9.60 7.66 -10.98 -0.08 9.51 16 14 O -0.50 -11.06 14.64 5.56 0.08 -10.98 16 15 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 16 S -0.06 -1.53 20.57 -107.50 -2.21 -3.75 16 17 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 18 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 21 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 C -0.16 -1.57 10.11 -26.70 -0.27 -1.84 16 26 C -0.17 -1.28 9.94 -26.70 -0.27 -1.55 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 1.00 6.44 -51.93 -0.33 0.66 16 30 H 0.16 0.82 8.06 -52.48 -0.42 0.40 16 31 H 0.21 0.49 8.06 -52.49 -0.42 0.07 16 32 H 0.40 3.57 8.12 -40.82 -0.33 3.24 16 33 H 0.08 1.03 7.89 -51.93 -0.41 0.62 16 34 H 0.09 1.55 6.83 -51.93 -0.35 1.20 16 35 H 0.40 3.78 8.83 -40.82 -0.36 3.42 16 36 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 37 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 41 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 380.85 15.07 5.74 5.74 Total: -1.00 -36.48 380.85 -7.90 -44.37 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.56 Total: 5.19 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -1.19 Total: -4.47 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.14 Total: -42.83 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.21 Total: -20.62 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.48 -7.90 -44.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358647265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.343 kcal (2) G-P(sol) polarization free energy of solvation -36.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds