Wall clock time and date at job start Tue Mar 31 2020 20:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 110.64273 * 2 1 4 4 C 1.34773 * 120.00159 * 298.30941 * 3 2 1 5 5 O 1.21618 * 120.00121 * 359.97438 * 4 3 2 6 6 C 1.47375 * 120.00298 * 180.02562 * 4 3 2 7 7 C 1.47019 * 127.19544 * 180.30930 * 6 4 3 8 8 C 1.34177 * 105.95809 * 180.14977 * 7 6 4 9 9 O 1.34214 * 109.12112 * 359.60541 * 8 7 6 10 10 C 1.33655 * 110.90867 * 0.26473 * 9 8 7 11 11 C 1.55162 * 110.86964 * 123.24895 * 2 1 3 12 12 C 1.54910 * 101.58164 * 153.93264 * 11 2 1 13 13 N 1.47422 * 104.83444 * 322.99016 * 12 11 2 14 14 C 1.34769 * 125.64834 * 204.16353 * 13 12 11 15 15 O 1.21285 * 120.00194 * 179.97438 * 14 13 12 16 16 C 1.50698 * 119.99908 * 359.95611 * 14 13 12 17 17 S 1.81011 * 109.47101 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99963 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00092 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99852 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99834 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00000 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46869 * 89.99407 * 22 20 18 24 24 H 1.48496 * 109.47281 * 209.99642 * 22 20 18 25 25 H 1.48501 * 109.47059 * 329.99918 * 22 20 18 26 26 C 1.47025 * 108.70197 * 24.12672 * 13 12 11 27 27 H 1.09007 * 109.46965 * 59.30000 * 1 2 3 28 28 H 1.08995 * 109.47552 * 179.29872 * 1 2 3 29 29 H 1.09000 * 109.47575 * 299.30275 * 1 2 3 30 30 H 0.97003 * 120.00142 * 118.31265 * 3 2 1 31 31 H 1.08005 * 127.02507 * 0.02562 * 7 6 4 32 32 H 1.08002 * 125.44341 * 179.87398 * 8 7 6 33 33 H 1.08001 * 125.79919 * 180.02562 * 10 9 8 34 34 H 1.09002 * 111.00140 * 272.01111 * 11 2 1 35 35 H 1.09002 * 111.00465 * 35.85834 * 11 2 1 36 36 H 1.08995 * 110.36717 * 204.14493 * 12 11 2 37 37 H 1.09008 * 110.45699 * 81.87708 * 12 11 2 38 38 H 1.08998 * 109.47536 * 299.99836 * 16 14 13 39 39 H 1.08999 * 109.47030 * 60.00652 * 16 14 13 40 40 H 0.97002 * 120.00501 * 180.02562 * 21 20 18 41 41 H 1.09002 * 109.88393 * 239.52328 * 26 13 12 42 42 H 1.08999 * 109.87898 * 118.35562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7660 2.1967 -1.0276 5 8 1.0846 1.8036 -1.9551 6 6 2.2860 3.5756 -1.0279 7 6 2.0745 4.6051 -2.0560 8 6 2.7365 5.6921 -1.6312 9 8 3.3149 5.4213 -0.4508 10 6 3.0598 4.1653 -0.0716 11 6 2.0827 -0.7949 1.2125 12 6 3.4673 -1.2457 0.6838 13 7 3.2470 -1.5463 -0.7426 14 6 3.9948 -2.3780 -1.4946 15 8 3.7199 -2.5513 -2.6631 16 6 5.1727 -3.0922 -0.8837 17 16 5.9671 -4.1278 -2.1378 18 6 7.2712 -4.8237 -1.1789 19 1 7.3759 -4.5590 -0.1370 20 6 8.1634 -5.7128 -1.7621 21 7 9.1373 -6.2330 -1.0456 22 14 7.9818 -6.1711 -3.5639 23 1 8.7658 -5.2241 -4.3969 24 1 8.4856 -7.5517 -3.7767 25 1 6.5497 -6.1016 -3.9504 26 6 2.0760 -0.7893 -1.2086 27 1 -0.3633 0.5247 -0.8837 28 1 -0.3634 -1.0275 -0.0126 29 1 -0.3634 0.5029 0.8961 30 1 2.5903 1.6843 0.7396 31 1 1.5045 4.5059 -2.9680 32 1 2.7913 6.6359 -2.1535 33 1 3.4069 3.6970 0.8376 34 1 2.1885 -0.1515 2.0860 35 1 1.4513 -1.6547 1.4367 36 1 3.8030 -2.1379 1.2121 37 1 4.1969 -0.4433 0.7941 38 1 5.8883 -2.3596 -0.5105 39 1 4.8305 -3.7184 -0.0597 40 1 9.7610 -6.8540 -1.4532 41 1 1.3139 -1.4755 -1.5781 42 1 2.3712 -0.0993 -1.9990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358778660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:24 Heat of formation + Delta-G solvation = -46.026468 kcal Electronic energy + Delta-G solvation = -26455.158772 eV Core-core repulsion = 22528.598817 eV Total energy + Delta-G solvation = -3926.559956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.94233 -40.81655 -39.15499 -37.45853 -34.50080 -33.36376 -32.44268 -31.83330 -30.08867 -29.87138 -29.45360 -26.22307 -25.56588 -24.42954 -23.31502 -21.90248 -21.00734 -20.00805 -19.41405 -18.79876 -17.72836 -16.77070 -16.73047 -16.55484 -16.43869 -15.64364 -15.30694 -15.07295 -14.99210 -14.69903 -14.15754 -13.96759 -13.83862 -13.70229 -13.30924 -13.09829 -12.93528 -12.82886 -12.75576 -12.55496 -12.42956 -11.91069 -11.80610 -11.64050 -11.26414 -11.20970 -11.00427 -10.61651 -10.21454 -10.14503 -9.86051 -9.59644 -9.41704 -9.22814 -9.00316 -8.57619 -8.49019 -6.92110 -6.29291 -4.00911 0.93115 1.69136 2.47947 2.64382 2.73603 2.96851 3.03950 3.20322 3.33997 3.51751 3.60103 3.91815 4.15978 4.21472 4.25745 4.33656 4.49912 4.61961 4.70478 4.91155 4.99478 5.08718 5.09928 5.16238 5.25506 5.26616 5.35160 5.41611 5.45744 5.50401 5.56872 5.62383 5.78207 5.86525 5.88606 5.96013 5.99242 6.20807 6.32924 6.51686 7.11933 7.57293 7.89553 7.93749 8.40615 8.45532 9.17099 10.79874 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.002485 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.173650 B =11262.891303 C =11880.056003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.165 3.835 3 N -0.716 5.716 4 C 0.590 3.410 5 O -0.524 6.524 6 C -0.234 4.234 7 C -0.164 4.164 8 C -0.040 4.040 9 O -0.174 6.174 10 C 0.020 3.980 11 C -0.133 4.133 12 C 0.098 3.902 13 N -0.625 5.625 14 C 0.545 3.455 15 O -0.515 6.515 16 C -0.116 4.116 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.108 3.892 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.398 0.602 31 H 0.160 0.840 32 H 0.210 0.790 33 H 0.210 0.790 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.271 0.729 41 H 0.077 0.923 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.716 23.166 8.825 29.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.079 3.921 3 N -0.369 5.369 4 C 0.378 3.622 5 O -0.401 6.401 6 C -0.239 4.239 7 C -0.184 4.184 8 C -0.106 4.106 9 O -0.069 6.069 10 C -0.050 4.050 11 C -0.171 4.171 12 C -0.026 4.026 13 N -0.362 5.362 14 C 0.334 3.666 15 O -0.389 6.389 16 C -0.267 4.267 17 S 0.084 5.916 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.016 4.016 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.233 0.767 31 H 0.178 0.822 32 H 0.226 0.774 33 H 0.227 0.773 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.239 22.631 6.510 29.184 hybrid contribution 0.796 -0.051 1.001 1.281 sum -16.443 22.580 7.511 28.925 Atomic orbital electron populations 1.22075 0.92381 1.03198 1.03612 1.21269 0.94620 0.80683 0.95547 1.45855 1.55005 1.12372 1.23659 1.17241 0.79587 0.83462 0.81945 1.90803 1.38132 1.76268 1.34880 1.21550 1.07527 0.96150 0.98661 1.22815 1.03320 0.91434 1.00819 1.23987 0.99260 1.01168 0.86141 1.83801 1.59896 1.29108 1.34077 1.24434 0.98279 0.82638 0.99660 1.23144 0.96728 1.00691 0.96538 1.22337 0.96789 1.01501 0.81952 1.48467 1.30659 1.46049 1.11056 1.19998 0.82817 0.77920 0.85905 1.90721 1.69809 1.62309 1.16017 1.23249 0.97430 1.02100 1.03906 1.84842 1.35845 1.54428 1.16449 1.22302 1.13435 1.31360 0.99710 0.89406 1.24705 0.93775 0.94296 0.98507 1.69933 1.15382 1.29723 1.36685 0.86739 0.81663 0.78668 0.84833 1.19196 1.19922 1.15883 1.22248 0.88263 0.94728 0.96332 0.90167 0.91059 0.91964 0.76735 0.82207 0.77385 0.77327 0.89079 0.88424 0.89660 0.91338 0.88681 0.88539 0.91936 0.90498 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.45 37.16 0.31 -0.96 16 2 C 0.17 1.45 0.81 -129.98 -0.11 1.34 16 3 N -0.72 -5.56 5.14 -46.99 -0.24 -5.80 16 4 C 0.59 6.32 7.03 -12.54 -0.09 6.23 16 5 O -0.52 -7.59 13.90 5.26 0.07 -7.52 16 6 C -0.23 -2.11 6.31 -103.28 -0.65 -2.76 16 7 C -0.16 -1.40 11.01 -37.46 -0.41 -1.82 16 8 C -0.04 -0.25 12.03 29.30 0.35 0.10 16 9 O -0.17 -1.22 10.52 7.65 0.08 -1.14 16 10 C 0.02 0.13 11.61 30.08 0.35 0.47 16 11 C -0.13 -0.85 6.09 -24.58 -0.15 -1.00 16 12 C 0.10 0.91 6.67 -2.53 -0.02 0.90 16 13 N -0.62 -8.89 3.33 -170.52 -0.57 -9.46 16 14 C 0.55 10.44 7.87 -10.99 -0.09 10.35 16 15 O -0.51 -12.01 16.19 5.55 0.09 -11.92 16 16 C -0.12 -2.31 5.16 36.00 0.19 -2.13 16 17 S -0.14 -3.67 18.55 -107.50 -1.99 -5.67 16 18 C -0.52 -15.05 10.04 30.94 0.31 -14.74 16 19 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 20 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.60 13.97 55.49 0.78 -25.83 16 22 Si 0.86 22.01 27.74 -169.99 -4.72 17.29 16 23 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.23 -6.05 6.74 56.52 0.38 -5.67 16 26 C 0.11 1.44 5.76 -3.06 -0.02 1.42 16 27 H 0.08 0.86 6.38 -51.93 -0.33 0.53 16 28 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.40 1.75 7.44 -40.82 -0.30 1.44 16 31 H 0.16 1.32 8.06 -52.48 -0.42 0.89 16 32 H 0.21 0.53 8.06 -52.49 -0.42 0.11 16 33 H 0.21 0.39 7.47 -52.49 -0.39 0.00 16 34 H 0.09 0.32 8.04 -51.93 -0.42 -0.10 16 35 H 0.10 0.59 8.05 -51.93 -0.42 0.18 16 36 H 0.09 0.77 7.47 -51.93 -0.39 0.38 16 37 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 38 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 39 H 0.10 1.76 7.85 -51.92 -0.41 1.36 16 40 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.08 1.09 7.80 -51.93 -0.41 0.68 16 42 H 0.08 1.28 6.47 -51.93 -0.34 0.94 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -38.75 366.61 -6.60 -45.35 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -5.51 Total: -0.96 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -0.11 Total: 0.14 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: -0.03 Total: -41.09 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: 0.24 Total: -20.58 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.72 Total: 17.29 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.75 -6.60 -45.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358778660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.680 kcal (2) G-P(sol) polarization free energy of solvation -38.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds