Wall clock time and date at job start Tue Mar 31 2020 20:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 110.64273 * 2 1 4 4 C 1.34773 * 120.00159 * 298.30941 * 3 2 1 5 5 O 1.21618 * 120.00121 * 359.97438 * 4 3 2 6 6 C 1.47375 * 120.00298 * 180.02562 * 4 3 2 7 7 C 1.47019 * 127.19544 * 180.30930 * 6 4 3 8 8 C 1.34177 * 105.95809 * 180.14977 * 7 6 4 9 9 O 1.34214 * 109.12112 * 359.60541 * 8 7 6 10 10 C 1.33655 * 110.90867 * 0.26473 * 9 8 7 11 11 C 1.55162 * 110.86964 * 123.24895 * 2 1 3 12 12 C 1.54910 * 101.58164 * 153.93264 * 11 2 1 13 13 N 1.47422 * 104.83444 * 322.99016 * 12 11 2 14 14 C 1.34769 * 125.64834 * 204.16353 * 13 12 11 15 15 O 1.21285 * 120.00194 * 179.97438 * 14 13 12 16 16 C 1.50698 * 119.99908 * 359.95611 * 14 13 12 17 17 S 1.81011 * 109.47101 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99963 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00092 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99852 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99834 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00000 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46869 * 89.99407 * 22 20 18 24 24 H 1.48496 * 109.47281 * 209.99642 * 22 20 18 25 25 H 1.48501 * 109.47059 * 329.99918 * 22 20 18 26 26 C 1.47025 * 108.70197 * 24.12672 * 13 12 11 27 27 H 1.09007 * 109.46965 * 59.30000 * 1 2 3 28 28 H 1.08995 * 109.47552 * 179.29872 * 1 2 3 29 29 H 1.09000 * 109.47575 * 299.30275 * 1 2 3 30 30 H 0.97003 * 120.00142 * 118.31265 * 3 2 1 31 31 H 1.08005 * 127.02507 * 0.02562 * 7 6 4 32 32 H 1.08002 * 125.44341 * 179.87398 * 8 7 6 33 33 H 1.08001 * 125.79919 * 180.02562 * 10 9 8 34 34 H 1.09002 * 111.00140 * 272.01111 * 11 2 1 35 35 H 1.09002 * 111.00465 * 35.85834 * 11 2 1 36 36 H 1.08995 * 110.36717 * 204.14493 * 12 11 2 37 37 H 1.09008 * 110.45699 * 81.87708 * 12 11 2 38 38 H 1.08998 * 109.47536 * 299.99836 * 16 14 13 39 39 H 1.08999 * 109.47030 * 60.00652 * 16 14 13 40 40 H 0.97002 * 120.00501 * 180.02562 * 21 20 18 41 41 H 1.09002 * 109.88393 * 239.52328 * 26 13 12 42 42 H 1.08999 * 109.87898 * 118.35562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7660 2.1967 -1.0276 5 8 1.0846 1.8036 -1.9551 6 6 2.2860 3.5756 -1.0279 7 6 2.0745 4.6051 -2.0560 8 6 2.7365 5.6921 -1.6312 9 8 3.3149 5.4213 -0.4508 10 6 3.0598 4.1653 -0.0716 11 6 2.0827 -0.7949 1.2125 12 6 3.4673 -1.2457 0.6838 13 7 3.2470 -1.5463 -0.7426 14 6 3.9948 -2.3780 -1.4946 15 8 3.7199 -2.5513 -2.6631 16 6 5.1727 -3.0922 -0.8837 17 16 5.9671 -4.1278 -2.1378 18 6 7.2712 -4.8237 -1.1789 19 1 7.3759 -4.5590 -0.1370 20 6 8.1634 -5.7128 -1.7621 21 7 9.1373 -6.2330 -1.0456 22 14 7.9818 -6.1711 -3.5639 23 1 8.7658 -5.2241 -4.3969 24 1 8.4856 -7.5517 -3.7767 25 1 6.5497 -6.1016 -3.9504 26 6 2.0760 -0.7893 -1.2086 27 1 -0.3633 0.5247 -0.8837 28 1 -0.3634 -1.0275 -0.0126 29 1 -0.3634 0.5029 0.8961 30 1 2.5903 1.6843 0.7396 31 1 1.5045 4.5059 -2.9680 32 1 2.7913 6.6359 -2.1535 33 1 3.4069 3.6970 0.8376 34 1 2.1885 -0.1515 2.0860 35 1 1.4513 -1.6547 1.4367 36 1 3.8030 -2.1379 1.2121 37 1 4.1969 -0.4433 0.7941 38 1 5.8883 -2.3596 -0.5105 39 1 4.8305 -3.7184 -0.0597 40 1 9.7610 -6.8540 -1.4532 41 1 1.3139 -1.4755 -1.5781 42 1 2.3712 -0.0993 -1.9990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358778660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:23 Heat of formation + Delta-G solvation = -75.428823 kcal Electronic energy + Delta-G solvation = -26456.433754 eV Core-core repulsion = 22528.598817 eV Total energy + Delta-G solvation = -3927.834937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.47366 -41.73627 -40.34025 -38.57251 -35.49664 -34.68562 -34.02819 -32.66457 -31.10701 -30.79876 -30.29571 -27.92213 -27.14528 -25.17757 -24.14377 -22.43081 -21.66393 -21.08994 -20.45451 -19.74626 -19.29094 -18.13532 -17.73843 -17.16929 -17.14155 -17.10545 -16.82869 -16.21084 -15.84588 -15.80808 -15.72769 -15.15362 -14.92227 -14.62876 -14.51407 -14.30295 -13.86530 -13.77422 -13.58912 -13.38614 -13.35700 -13.32196 -13.17924 -13.03435 -12.70975 -12.43850 -12.38493 -11.95058 -11.88925 -11.18791 -11.09684 -10.97583 -10.84608 -10.54906 -10.26344 -9.79996 -9.72685 -9.03413 -8.53053 -6.24212 0.36830 0.93282 1.12064 1.29376 1.43206 1.46604 1.50880 1.92546 2.01714 2.14025 2.23557 2.31498 2.66737 2.85248 3.19733 3.44694 3.61873 3.72381 3.78324 3.82401 4.10523 4.14282 4.19457 4.30292 4.36823 4.49257 4.61124 4.64369 4.68238 4.74286 4.78258 4.80117 4.96607 5.03924 5.06996 5.21036 5.29319 5.30547 5.48348 5.69885 5.99336 6.10132 6.30202 6.51999 6.92521 7.00739 7.19638 8.59093 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.002485 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.173650 B =11262.891303 C =11880.056003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.173 3.827 3 N -0.699 5.699 4 C 0.585 3.415 5 O -0.576 6.576 6 C -0.273 4.273 7 C -0.203 4.203 8 C -0.025 4.025 9 O -0.178 6.178 10 C 0.048 3.952 11 C -0.114 4.114 12 C 0.082 3.918 13 N -0.614 5.614 14 C 0.542 3.458 15 O -0.570 6.570 16 C -0.096 4.096 17 S -0.184 6.184 18 C -0.524 4.524 19 H 0.067 0.933 20 C 0.048 3.952 21 N -0.914 5.914 22 Si 0.910 3.090 23 H -0.264 1.264 24 H -0.257 1.257 25 H -0.240 1.240 26 C 0.106 3.894 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.419 0.581 31 H 0.148 0.852 32 H 0.243 0.757 33 H 0.255 0.745 34 H 0.138 0.862 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.277 0.723 41 H 0.060 0.940 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.904 24.820 11.688 32.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.086 3.914 3 N -0.353 5.353 4 C 0.375 3.625 5 O -0.456 6.456 6 C -0.278 4.278 7 C -0.223 4.223 8 C -0.090 4.090 9 O -0.072 6.072 10 C -0.022 4.022 11 C -0.152 4.152 12 C -0.039 4.039 13 N -0.348 5.348 14 C 0.330 3.670 15 O -0.449 6.449 16 C -0.247 4.247 17 S 0.043 5.957 18 C -0.672 4.672 19 H 0.085 0.915 20 C -0.157 4.157 21 N -0.552 5.552 22 Si 0.733 3.267 23 H -0.188 1.188 24 H -0.181 1.181 25 H -0.164 1.164 26 C -0.018 4.018 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.257 0.743 31 H 0.166 0.834 32 H 0.259 0.741 33 H 0.271 0.729 34 H 0.156 0.844 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.415 24.323 9.470 31.378 hybrid contribution 0.792 -0.423 0.214 0.923 sum -16.623 23.900 9.684 30.681 Atomic orbital electron populations 1.22034 0.91839 1.03531 1.03410 1.21204 0.94887 0.80788 0.94540 1.45674 1.54590 1.11485 1.23529 1.17598 0.78871 0.84333 0.81714 1.90780 1.40574 1.77330 1.36933 1.21584 1.10025 0.95722 1.00473 1.22963 1.05123 0.92880 1.01323 1.24538 0.97385 1.01535 0.85549 1.83846 1.59724 1.29450 1.34181 1.25176 0.95623 0.81802 0.99643 1.23205 0.94339 1.01274 0.96379 1.22841 0.99482 1.02926 0.78691 1.48434 1.29537 1.43858 1.13001 1.19850 0.83048 0.78611 0.85482 1.90697 1.71311 1.64578 1.18342 1.23173 0.97706 1.01696 1.02127 1.84874 1.35551 1.56083 1.19241 1.22403 1.14332 1.31352 0.99086 0.91496 1.25490 0.93618 0.94395 1.02222 1.69996 1.16238 1.30572 1.38399 0.85925 0.81300 0.79204 0.80314 1.18849 1.18128 1.16432 1.22315 0.87436 0.94099 0.97940 0.93215 0.90441 0.89320 0.74291 0.83430 0.74077 0.72937 0.84434 0.87362 0.88618 0.89163 0.86893 0.86471 0.91314 0.92114 0.93854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.45 71.98 0.61 -1.64 16 2 C 0.17 2.66 0.81 4.79 0.00 2.66 16 3 N -0.70 -9.19 5.14 -420.82 -2.16 -11.35 16 4 C 0.59 12.48 7.03 86.65 0.61 13.09 16 5 O -0.58 -17.86 13.90 -4.09 -0.06 -17.92 16 6 C -0.27 -4.71 6.31 -18.99 -0.12 -4.83 16 7 C -0.20 -3.54 11.01 23.65 0.26 -3.28 16 8 C -0.02 -0.27 12.03 66.89 0.80 0.53 16 9 O -0.18 -1.99 10.52 4.46 0.05 -1.94 16 10 C 0.05 0.44 11.61 67.39 0.78 1.22 16 11 C -0.11 -0.92 6.09 31.99 0.19 -0.72 16 12 C 0.08 1.22 6.67 86.86 0.58 1.80 16 13 N -0.61 -16.76 3.33 -811.79 -2.70 -19.46 16 14 C 0.54 20.68 7.87 87.66 0.69 21.37 16 15 O -0.57 -27.50 16.19 -3.04 -0.05 -27.55 16 16 C -0.10 -3.74 5.16 71.24 0.37 -3.37 16 17 S -0.18 -9.57 18.55 -56.49 -1.05 -10.62 16 18 C -0.52 -30.50 10.04 67.96 0.68 -29.81 16 19 H 0.07 4.05 8.03 -2.91 -0.02 4.02 16 20 C 0.05 2.85 5.50 84.86 0.47 3.32 16 21 N -0.91 -55.41 13.97 21.65 0.30 -55.10 16 22 Si 0.91 45.60 27.74 68.60 1.90 47.51 16 23 H -0.26 -12.95 7.11 99.48 0.71 -12.25 16 24 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 25 H -0.24 -12.17 6.74 99.48 0.67 -11.50 16 26 C 0.11 2.85 5.76 86.73 0.50 3.35 16 27 H 0.05 1.09 6.38 -2.38 -0.02 1.08 16 28 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.42 1.80 7.44 -92.71 -0.69 1.11 16 31 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 32 H 0.24 0.65 8.06 -2.91 -0.02 0.63 16 33 H 0.25 -0.38 7.47 -2.91 -0.02 -0.40 16 34 H 0.14 -0.02 8.04 -2.39 -0.02 -0.04 16 35 H 0.11 0.77 8.05 -2.39 -0.02 0.75 16 36 H 0.10 1.32 7.47 -2.39 -0.02 1.30 16 37 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 39 H 0.12 4.06 7.85 -2.40 -0.02 4.04 16 40 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 41 H 0.06 1.81 7.80 -2.39 -0.02 1.79 16 42 H 0.04 1.49 6.47 -2.39 -0.02 1.48 16 Total: -1.00 -90.67 366.61 3.00 -87.67 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 0.33 Total: 5.09 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 6.43 Total: 3.68 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -4.56 Total: -85.91 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -0.06 Total: -47.41 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.90 Total: 47.51 kcal Atomic # 16 Polarization: -9.57 SS G_CDS: -1.05 Total: -10.62 kcal Total: -90.67 3.00 -87.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358778660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.241 kcal (2) G-P(sol) polarization free energy of solvation -90.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds