Wall clock time and date at job start Tue Mar 31 2020 21:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47148 * 2 1 4 4 C 1.47194 * 109.47439 * 240.00340 * 2 1 3 5 5 N 2.60800 * 109.47232 * 240.00212 * 2 1 3 6 6 C 1.52994 * 109.47088 * 119.99790 * 2 1 3 7 7 S 1.81397 * 109.47318 * 300.00135 * 6 2 1 8 8 O 1.42096 * 110.54546 * 68.37683 * 7 6 2 9 9 O 1.42099 * 110.54582 * 291.62366 * 7 6 2 10 10 N 1.65602 * 104.45139 * 179.97438 * 7 6 2 11 11 C 1.46505 * 119.99755 * 65.00191 * 10 7 6 12 12 C 1.50699 * 109.46837 * 165.00307 * 11 10 7 13 13 C 1.38305 * 119.93408 * 89.99748 * 12 11 10 14 14 C 1.38101 * 120.07071 * 179.97438 * 13 12 11 15 15 C 1.38876 * 119.92956 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06861 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53840 * 16 15 14 18 18 H 1.08003 * 120.00029 * 354.94359 * 17 16 15 19 19 C 1.38659 * 120.00122 * 174.94542 * 17 16 15 20 20 N 1.31558 * 119.99705 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00035 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47181 * 89.99980 * 21 19 17 23 23 H 1.48498 * 109.47260 * 210.00361 * 21 19 17 24 24 H 1.48502 * 109.47130 * 330.00179 * 21 19 17 25 25 C 1.38880 * 119.86555 * 0.27954 * 15 14 13 26 26 C 1.38102 * 119.92551 * 359.44514 * 25 15 14 27 27 H 1.09003 * 109.46996 * 300.00555 * 1 2 3 28 28 H 1.09002 * 109.47025 * 59.99938 * 1 2 3 29 29 H 1.08992 * 109.46998 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47686 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47208 * 299.99950 * 3 2 1 32 32 H 1.09007 * 109.46919 * 59.99851 * 3 2 1 33 33 H 1.09000 * 109.47377 * 180.02562 * 6 2 1 34 34 H 1.08998 * 109.47569 * 60.00196 * 6 2 1 35 35 H 0.96998 * 120.00343 * 245.00345 * 10 7 6 36 36 H 1.08986 * 109.47314 * 44.99897 * 11 10 7 37 37 H 1.09005 * 109.46923 * 284.99642 * 11 10 7 38 38 H 1.07999 * 119.96326 * 0.02562 * 13 12 11 39 39 H 1.07997 * 120.03156 * 180.02562 * 14 13 12 40 40 H 0.96997 * 119.99350 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.04097 * 179.72435 * 25 15 14 42 42 H 1.07997 * 119.96688 * 180.27743 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6938 -1.2019 5 7 2.3994 -1.2293 -2.1295 6 6 2.0400 -0.7212 1.2492 7 16 1.4353 0.1339 2.7303 8 8 0.0280 -0.0183 2.8544 9 8 2.0479 1.4101 2.8544 10 7 2.0530 -0.7407 3.9936 11 6 3.5014 -0.7980 4.2060 12 6 3.7858 -1.3264 5.5883 13 6 3.9351 -2.6865 5.7901 14 6 4.1963 -3.1738 7.0556 15 6 4.3086 -2.2966 8.1263 16 8 4.5659 -2.7725 9.3714 17 6 4.8152 -4.0928 9.4826 18 1 4.7242 -4.7342 8.6184 19 6 5.1883 -4.6272 10.7064 20 7 5.4320 -5.9155 10.8148 21 14 5.3463 -3.5178 12.2009 22 1 4.0421 -3.4512 12.9080 23 1 6.3787 -4.0655 13.1171 24 1 5.7435 -2.1547 11.7657 25 6 4.1519 -0.9319 7.9217 26 6 3.8965 -0.4504 6.6528 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1300 -0.7208 1.2495 34 1 1.6767 -1.7488 1.2493 35 1 1.4558 -1.2151 4.5929 36 1 3.9232 0.2019 4.1053 37 1 3.9514 -1.4586 3.4648 38 1 3.8480 -3.3682 4.9569 39 1 4.3131 -4.2359 7.2123 40 1 5.6934 -6.2892 11.6708 41 1 4.2343 -0.2476 8.7531 42 1 3.7790 0.6111 6.4921 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364766534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:21 Heat of formation + Delta-G solvation = -47.934212 kcal Electronic energy + Delta-G solvation = -26067.986313 eV Core-core repulsion = 22141.343631 eV Total energy + Delta-G solvation = -3926.642682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.38901 -38.81715 -37.52813 -37.24564 -36.32918 -35.55356 -34.86080 -32.49223 -30.41789 -29.80796 -28.51566 -28.00917 -25.98560 -24.46878 -23.58148 -22.22589 -20.73323 -19.71440 -18.41295 -18.01932 -17.53348 -17.13282 -16.74546 -16.54330 -15.57305 -15.15054 -15.07985 -14.91365 -14.52063 -14.24559 -14.01923 -13.92778 -13.82388 -13.61549 -13.36099 -13.25920 -13.01605 -12.91556 -12.75087 -12.54590 -12.33670 -12.29699 -12.27330 -12.08156 -11.86306 -11.82838 -11.67273 -11.42554 -11.16620 -10.93774 -10.84643 -10.79336 -10.24852 -9.67720 -9.50055 -8.98049 -8.41339 -7.51461 -6.52572 -4.19472 -0.14520 1.88395 1.99714 2.18412 2.26186 2.58555 3.16302 3.19253 3.23669 3.33155 3.40471 3.72674 3.81818 4.11997 4.13912 4.14708 4.34429 4.65198 4.70265 4.80518 4.89273 4.99808 5.00248 5.10438 5.12675 5.16465 5.26663 5.39574 5.49447 5.56591 5.62574 5.63168 5.79822 5.99960 6.19255 6.42339 6.64236 6.78442 6.91684 7.03387 7.07639 7.14690 7.46882 7.67450 7.91472 8.81945 9.42522 10.54487 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.027310 B = 0.002125 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.023444 B =13173.408055 C =13620.255819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.057 3.943 3 C -0.179 4.179 4 C 0.221 3.779 5 N -0.422 5.422 6 C -0.638 4.638 7 S 2.618 3.382 8 O -0.951 6.951 9 O -0.945 6.945 10 N -1.110 6.110 11 C 0.170 3.830 12 C -0.199 4.199 13 C -0.055 4.055 14 C -0.225 4.225 15 C 0.167 3.833 16 O -0.212 6.212 17 C -0.392 4.392 18 H 0.108 0.892 19 C 0.064 3.936 20 N -0.875 5.875 21 Si 0.906 3.094 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.195 4.195 26 C -0.055 4.055 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.422 0.578 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.111 0.889 39 H 0.134 0.866 40 H 0.281 0.719 41 H 0.119 0.881 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.508 12.633 -18.443 23.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.053 3.947 3 C -0.237 4.237 4 C -0.098 4.098 5 N -0.096 5.096 6 C -0.765 4.765 7 S 2.708 3.292 8 O -0.941 6.941 9 O -0.935 6.935 10 N -0.872 5.872 11 C 0.045 3.955 12 C -0.202 4.202 13 C -0.074 4.074 14 C -0.244 4.244 15 C 0.113 3.887 16 O -0.116 6.116 17 C -0.467 4.467 18 H 0.125 0.875 19 C -0.140 4.140 20 N -0.512 5.512 21 Si 0.732 3.268 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.183 1.183 25 C -0.214 4.214 26 C -0.074 4.074 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.258 0.742 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.129 0.871 39 H 0.152 0.848 40 H 0.091 0.909 41 H 0.137 0.863 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.245 12.582 -19.558 24.358 hybrid contribution 0.232 -0.666 0.923 1.162 sum -7.013 11.916 -18.635 23.204 Atomic orbital electron populations 1.22450 0.90154 1.05340 1.05702 1.17838 0.97257 0.94539 0.85106 1.22458 1.03747 0.91730 1.05737 1.28668 0.93510 0.93630 0.94031 1.81261 1.08475 1.08797 1.11113 1.30940 1.14050 1.14986 1.16548 1.04846 0.74245 0.75060 0.75005 1.93616 1.28884 1.86573 1.85031 1.93614 1.78195 1.37043 1.84679 1.55702 1.15664 1.70992 1.44797 1.20070 0.78560 1.01243 0.95639 1.19113 1.13473 0.93733 0.93882 1.20680 0.96486 0.94004 0.96234 1.21271 1.09597 1.00969 0.92560 1.19199 0.92297 0.92387 0.84795 1.83574 1.76779 1.27235 1.24042 1.20786 1.47385 0.79378 0.99138 0.87490 1.24499 0.95215 0.95868 0.98399 1.69642 1.43788 1.10919 1.26839 0.86163 0.78444 0.81222 0.80994 1.19781 1.20716 1.18283 1.20234 1.10927 0.92738 0.97498 1.20575 0.96793 0.98535 0.91463 0.88713 0.89915 0.90140 0.90097 0.89930 0.88653 0.83876 0.83723 0.74191 0.89924 0.91766 0.87063 0.84803 0.90882 0.86305 0.86471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.97 7.95 37.16 0.30 -0.67 16 2 C 0.06 0.34 0.72 -157.30 -0.11 0.23 16 3 C -0.18 -0.95 7.95 37.16 0.30 -0.66 16 4 C 0.22 1.84 13.86 -20.76 -0.29 1.56 16 5 N -0.42 -4.71 18.54 42.16 0.78 -3.93 16 6 C -0.64 -3.37 5.03 37.15 0.19 -3.18 16 7 S 2.62 20.70 4.49 -107.50 -0.48 20.22 16 8 O -0.95 -9.73 15.70 -57.54 -0.90 -10.63 16 9 O -0.95 -9.64 15.12 -57.54 -0.87 -10.51 16 10 N -1.11 -9.67 5.88 -11.66 -0.07 -9.73 16 11 C 0.17 1.63 6.25 -5.19 -0.03 1.60 16 12 C -0.20 -2.72 5.28 -104.57 -0.55 -3.27 16 13 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 14 C -0.22 -4.36 9.17 -39.40 -0.36 -4.72 16 15 C 0.17 3.55 6.65 -39.11 -0.26 3.29 16 16 O -0.21 -5.29 8.59 0.05 0.00 -5.29 16 17 C -0.39 -10.50 9.95 30.89 0.31 -10.20 16 18 H 0.11 2.92 5.44 -52.48 -0.29 2.63 16 19 C 0.06 1.73 5.49 -17.51 -0.10 1.64 16 20 N -0.87 -24.38 13.96 55.48 0.77 -23.60 16 21 Si 0.91 20.85 28.62 -169.99 -4.86 15.99 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 25 C -0.19 -3.51 9.99 -39.39 -0.39 -3.90 16 26 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 27 H 0.09 0.56 5.46 -51.93 -0.28 0.27 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.55 5.46 -51.92 -0.28 0.27 16 33 H 0.14 0.52 8.14 -51.92 -0.42 0.10 16 34 H 0.14 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.42 3.73 8.61 -34.47 -0.30 3.43 16 36 H 0.08 0.74 7.64 -51.94 -0.40 0.34 16 37 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 38 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 40 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 42 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 367.55 15.07 5.54 5.54 Total: -1.00 -32.87 367.55 -7.07 -39.94 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.20 Total: 2.72 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -1.78 Total: -20.72 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 1.49 Total: -37.27 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -1.77 Total: -26.43 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.86 Total: 15.99 kcal Atomic # 16 Polarization: 20.70 SS G_CDS: -0.48 Total: 20.22 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.87 -7.07 -39.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364766534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.989 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds