Wall clock time and date at job start Tue Mar 31 2020 21:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47148 * 2 1 4 4 C 1.47194 * 109.47439 * 240.00340 * 2 1 3 5 5 N 2.60800 * 109.47232 * 240.00212 * 2 1 3 6 6 C 1.52994 * 109.47088 * 119.99790 * 2 1 3 7 7 S 1.81397 * 109.47318 * 300.00135 * 6 2 1 8 8 O 1.42096 * 110.54546 * 68.37683 * 7 6 2 9 9 O 1.42099 * 110.54582 * 291.62366 * 7 6 2 10 10 N 1.65602 * 104.45139 * 179.97438 * 7 6 2 11 11 C 1.46505 * 119.99755 * 65.00191 * 10 7 6 12 12 C 1.50699 * 109.46837 * 165.00307 * 11 10 7 13 13 C 1.38305 * 119.93408 * 89.99748 * 12 11 10 14 14 C 1.38101 * 120.07071 * 179.97438 * 13 12 11 15 15 C 1.38876 * 119.92956 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06861 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53840 * 16 15 14 18 18 H 1.08003 * 120.00029 * 354.94359 * 17 16 15 19 19 C 1.38659 * 120.00122 * 174.94542 * 17 16 15 20 20 N 1.31558 * 119.99705 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00035 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47181 * 89.99980 * 21 19 17 23 23 H 1.48498 * 109.47260 * 210.00361 * 21 19 17 24 24 H 1.48502 * 109.47130 * 330.00179 * 21 19 17 25 25 C 1.38880 * 119.86555 * 0.27954 * 15 14 13 26 26 C 1.38102 * 119.92551 * 359.44514 * 25 15 14 27 27 H 1.09003 * 109.46996 * 300.00555 * 1 2 3 28 28 H 1.09002 * 109.47025 * 59.99938 * 1 2 3 29 29 H 1.08992 * 109.46998 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47686 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47208 * 299.99950 * 3 2 1 32 32 H 1.09007 * 109.46919 * 59.99851 * 3 2 1 33 33 H 1.09000 * 109.47377 * 180.02562 * 6 2 1 34 34 H 1.08998 * 109.47569 * 60.00196 * 6 2 1 35 35 H 0.96998 * 120.00343 * 245.00345 * 10 7 6 36 36 H 1.08986 * 109.47314 * 44.99897 * 11 10 7 37 37 H 1.09005 * 109.46923 * 284.99642 * 11 10 7 38 38 H 1.07999 * 119.96326 * 0.02562 * 13 12 11 39 39 H 1.07997 * 120.03156 * 180.02562 * 14 13 12 40 40 H 0.96997 * 119.99350 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.04097 * 179.72435 * 25 15 14 42 42 H 1.07997 * 119.96688 * 180.27743 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6938 -1.2019 5 7 2.3994 -1.2293 -2.1295 6 6 2.0400 -0.7212 1.2492 7 16 1.4353 0.1339 2.7303 8 8 0.0280 -0.0183 2.8544 9 8 2.0479 1.4101 2.8544 10 7 2.0530 -0.7407 3.9936 11 6 3.5014 -0.7980 4.2060 12 6 3.7858 -1.3264 5.5883 13 6 3.9351 -2.6865 5.7901 14 6 4.1963 -3.1738 7.0556 15 6 4.3086 -2.2966 8.1263 16 8 4.5659 -2.7725 9.3714 17 6 4.8152 -4.0928 9.4826 18 1 4.7242 -4.7342 8.6184 19 6 5.1883 -4.6272 10.7064 20 7 5.4320 -5.9155 10.8148 21 14 5.3463 -3.5178 12.2009 22 1 4.0421 -3.4512 12.9080 23 1 6.3787 -4.0655 13.1171 24 1 5.7435 -2.1547 11.7657 25 6 4.1519 -0.9319 7.9217 26 6 3.8965 -0.4504 6.6528 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1300 -0.7208 1.2495 34 1 1.6767 -1.7488 1.2493 35 1 1.4558 -1.2151 4.5929 36 1 3.9232 0.2019 4.1053 37 1 3.9514 -1.4586 3.4648 38 1 3.8480 -3.3682 4.9569 39 1 4.3131 -4.2359 7.2123 40 1 5.6934 -6.2892 11.6708 41 1 4.2343 -0.2476 8.7531 42 1 3.7790 0.6111 6.4921 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364766534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:20 Heat of formation + Delta-G solvation = -71.248226 kcal Electronic energy + Delta-G solvation = -26068.997284 eV Core-core repulsion = 22141.343631 eV Total energy + Delta-G solvation = -3927.653653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.90005 -39.35657 -38.76754 -38.11708 -37.02234 -36.20635 -35.82236 -34.41220 -31.80610 -31.05952 -28.95849 -28.39406 -27.60179 -25.74390 -24.12719 -23.66404 -22.07755 -20.37417 -19.81633 -19.14590 -18.91660 -17.85252 -17.47710 -17.16702 -16.65450 -16.35287 -15.99408 -15.75158 -15.58432 -15.52050 -15.38912 -15.00625 -14.66174 -14.50693 -14.31076 -14.23039 -14.05555 -13.96016 -13.68927 -13.65284 -13.53910 -13.03839 -13.01760 -12.91027 -12.68752 -12.50653 -12.42434 -12.35301 -12.28459 -12.16080 -12.10573 -11.90925 -11.68492 -11.26233 -10.90269 -10.33978 -9.77741 -9.03879 -8.49817 -6.22102 -0.75920 0.58787 0.60407 1.32736 1.36099 1.52064 1.55968 1.63817 1.87556 2.28092 2.65635 2.78270 2.85681 3.06156 3.18958 3.25916 3.33525 3.62834 3.69724 3.87338 4.08784 4.20328 4.24467 4.50118 4.53214 4.56771 4.61685 4.63885 4.71183 4.78784 4.84762 4.89278 5.01458 5.04918 5.21302 5.27162 5.29072 5.38837 5.59883 5.76427 5.82649 5.92479 6.11809 6.25873 6.41747 6.84904 7.59768 8.61464 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.027310 B = 0.002125 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.023444 B =13173.408055 C =13620.255819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.059 3.941 3 C -0.186 4.186 4 C 0.249 3.751 5 N -0.473 5.473 6 C -0.629 4.629 7 S 2.634 3.366 8 O -0.976 6.976 9 O -0.969 6.969 10 N -1.114 6.114 11 C 0.164 3.836 12 C -0.166 4.166 13 C -0.051 4.051 14 C -0.241 4.241 15 C 0.123 3.877 16 O -0.246 6.246 17 C -0.397 4.397 18 H 0.084 0.916 19 C 0.009 3.991 20 N -0.922 5.922 21 Si 0.969 3.031 22 H -0.267 1.267 23 H -0.269 1.269 24 H -0.262 1.262 25 C -0.197 4.197 26 C -0.053 4.053 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.169 0.831 34 H 0.166 0.834 35 H 0.422 0.578 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.147 0.853 39 H 0.108 0.892 40 H 0.284 0.716 41 H 0.125 0.875 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.976 15.027 -20.902 26.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.054 3.946 3 C -0.244 4.244 4 C -0.070 4.070 5 N -0.149 5.149 6 C -0.759 4.759 7 S 2.727 3.273 8 O -0.967 6.967 9 O -0.959 6.959 10 N -0.874 5.874 11 C 0.039 3.961 12 C -0.169 4.169 13 C -0.070 4.070 14 C -0.261 4.261 15 C 0.074 3.926 16 O -0.153 6.153 17 C -0.473 4.473 18 H 0.102 0.898 19 C -0.189 4.189 20 N -0.563 5.563 21 Si 0.792 3.208 22 H -0.192 1.192 23 H -0.194 1.194 24 H -0.187 1.187 25 C -0.217 4.217 26 C -0.071 4.071 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.186 0.814 34 H 0.184 0.816 35 H 0.258 0.742 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.164 0.836 39 H 0.126 0.874 40 H 0.094 0.906 41 H 0.143 0.857 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.736 15.022 -22.026 27.761 hybrid contribution 0.246 -1.182 1.243 1.733 sum -7.490 13.840 -20.783 26.069 Atomic orbital electron populations 1.22550 0.89801 1.05893 1.06207 1.17963 0.97554 0.94746 0.84308 1.22559 1.04363 0.91234 1.06249 1.28959 0.92056 0.92366 0.93635 1.81303 1.10277 1.10563 1.12710 1.30857 1.15710 1.15483 1.13877 1.04236 0.73380 0.74438 0.75240 1.93593 1.30548 1.86824 1.85706 1.93590 1.78319 1.38614 1.85340 1.55556 1.15129 1.71100 1.45635 1.20274 0.79357 1.02978 0.93476 1.19638 1.08581 0.92747 0.95892 1.21037 0.95066 0.95598 0.95304 1.21316 1.10719 0.99734 0.94288 1.19775 0.94264 0.94121 0.84444 1.83519 1.79984 1.25720 1.26118 1.20714 1.47445 0.80480 0.98706 0.89833 1.25273 0.95387 0.97178 1.01083 1.69726 1.46523 1.12371 1.27689 0.85232 0.78776 0.79058 0.77764 1.19184 1.19409 1.18670 1.20528 1.10388 0.91369 0.99371 1.21047 0.95182 1.00587 0.90295 0.89100 0.88649 0.89657 0.89324 0.88738 0.88966 0.81356 0.81624 0.74215 0.88316 0.88038 0.83561 0.87395 0.90615 0.85719 0.83031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.48 7.95 71.98 0.57 -0.91 16 2 C 0.06 0.50 0.72 -53.99 -0.04 0.46 16 3 C -0.19 -1.36 7.95 71.98 0.57 -0.79 16 4 C 0.25 3.41 13.86 89.44 1.24 4.65 16 5 N -0.47 -9.60 18.54 20.00 0.37 -9.23 16 6 C -0.63 -3.76 5.03 71.98 0.36 -3.40 16 7 S 2.63 31.75 4.49 -56.49 -0.25 31.49 16 8 O -0.98 -17.36 15.70 -127.65 -2.00 -19.36 16 9 O -0.97 -16.22 15.12 -127.65 -1.93 -18.15 16 10 N -1.11 -14.42 5.88 -190.79 -1.12 -15.54 16 11 C 0.16 2.23 6.25 85.63 0.54 2.77 16 12 C -0.17 -3.85 5.28 -19.83 -0.10 -3.96 16 13 C -0.05 -1.43 9.69 22.25 0.22 -1.22 16 14 C -0.24 -9.55 9.17 22.39 0.21 -9.34 16 15 C 0.12 5.39 6.65 22.58 0.15 5.54 16 16 O -0.25 -12.88 8.59 -22.72 -0.20 -13.08 16 17 C -0.40 -22.67 9.95 67.92 0.68 -22.00 16 18 H 0.08 4.96 5.44 -2.91 -0.02 4.95 16 19 C 0.01 0.53 5.49 84.83 0.47 0.99 16 20 N -0.92 -54.06 13.96 21.61 0.30 -53.76 16 21 Si 0.97 44.56 28.62 68.60 1.96 46.52 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 25 C -0.20 -6.93 9.99 22.39 0.22 -6.71 16 26 C -0.05 -1.39 9.69 22.25 0.22 -1.17 16 27 H 0.09 0.85 5.46 -2.39 -0.01 0.83 16 28 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.09 0.79 5.46 -2.38 -0.01 0.78 16 33 H 0.17 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.17 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.42 5.86 8.61 -96.74 -0.83 5.03 16 36 H 0.10 1.15 7.64 -2.39 -0.02 1.13 16 37 H 0.10 0.74 8.08 -2.38 -0.02 0.72 16 38 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 39 H 0.11 4.80 5.64 -2.91 -0.02 4.78 16 40 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 42 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -76.68 367.55 2.66 -74.02 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.23 Total: 12.17 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 5.29 Total: -35.08 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -0.45 Total: -78.53 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: -4.13 Total: -50.60 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.96 Total: 46.52 kcal Atomic # 16 Polarization: 31.75 SS G_CDS: -0.25 Total: 31.49 kcal Total: -76.68 2.66 -74.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364766534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.776 kcal (2) G-P(sol) polarization free energy of solvation -76.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds