Wall clock time and date at job start Tue Mar 31 2020 20:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 110.88802 * 2 1 4 4 N 1.34779 * 119.99976 * 297.56747 * 3 2 1 5 5 O 1.21280 * 119.99978 * 117.57662 * 3 2 1 6 6 C 1.55159 * 111.00503 * 236.11497 * 2 1 3 7 7 C 1.54324 * 102.94487 * 206.42758 * 6 2 1 8 8 N 1.47025 * 107.26876 * 22.19219 * 7 6 2 9 9 S 1.65598 * 125.64632 * 181.02308 * 8 7 6 10 10 O 1.42097 * 106.40293 * 342.68445 * 9 8 7 11 11 O 1.42095 * 106.40545 * 209.76555 * 9 8 7 12 12 C 1.76200 * 107.21861 * 96.22316 * 9 8 7 13 13 C 1.37641 * 120.12724 * 113.03808 * 12 9 8 14 14 C 1.38610 * 120.24811 * 179.97438 * 13 12 9 15 15 C 1.38656 * 120.50355 * 0.05216 * 14 13 12 16 16 C 1.37604 * 120.24770 * 359.66607 * 15 14 13 17 17 C 1.40703 * 120.12882 * 293.06533 * 12 9 8 18 18 C 1.41393 * 120.24410 * 359.97438 * 17 12 9 19 19 H 1.08000 * 119.99880 * 331.71035 * 18 17 12 20 20 C 1.39941 * 119.99822 * 151.70783 * 18 17 12 21 21 N 1.30824 * 120.00372 * 335.34888 * 20 18 17 22 22 Si 1.86797 * 119.99842 * 155.34999 * 20 18 17 23 23 H 1.48502 * 109.47277 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.47002 * 300.00012 * 22 20 18 25 25 H 1.48504 * 109.47516 * 59.99711 * 22 20 18 26 26 C 1.47423 * 108.70521 * 1.28711 * 8 7 6 27 27 H 1.09004 * 109.47464 * 182.42915 * 1 2 3 28 28 H 1.08997 * 109.47150 * 302.43290 * 1 2 3 29 29 H 1.08998 * 109.47153 * 62.42758 * 1 2 3 30 30 H 0.97004 * 119.99553 * 0.02562 * 4 3 2 31 31 H 0.96993 * 120.00210 * 180.02562 * 4 3 2 32 32 H 1.08996 * 110.72069 * 88.06169 * 6 2 1 33 33 H 1.09003 * 110.86919 * 324.85978 * 6 2 1 34 34 H 1.08998 * 109.88068 * 262.77952 * 7 6 2 35 35 H 1.09002 * 109.88137 * 141.60933 * 7 6 2 36 36 H 1.08001 * 119.87373 * 0.02596 * 13 12 9 37 37 H 1.08005 * 119.74934 * 180.02562 * 14 13 12 38 38 H 1.08001 * 119.87841 * 179.97438 * 15 14 13 39 39 H 1.07992 * 120.12699 * 180.30017 * 16 15 14 40 40 H 0.96997 * 119.99475 * 354.16749 * 21 20 18 41 41 H 1.09006 * 110.36176 * 94.48075 * 26 8 7 42 42 H 1.08992 * 110.36757 * 216.80086 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0672 1.4079 0.0000 4 7 1.8028 2.2301 -1.0347 5 8 2.7377 1.8011 0.9310 6 6 2.0861 -0.8076 -1.2025 7 6 3.4674 -1.2740 -0.6964 8 7 3.4270 -1.2434 0.7730 9 16 4.6809 -1.6352 1.7812 10 8 5.6110 -2.3704 0.9979 11 8 4.0948 -2.1432 2.9719 12 6 5.4835 -0.1305 2.2244 13 6 5.4371 0.3204 3.5241 14 6 6.0680 1.5035 3.8756 15 6 6.7512 2.2463 2.9247 16 6 6.8155 1.8117 1.6207 17 6 6.1738 0.6150 1.2511 18 6 6.2281 0.1617 -0.0871 19 1 6.1707 -0.8952 -0.3019 20 6 6.3562 1.0824 -1.1331 21 7 5.9543 2.3168 -0.9710 22 14 7.1011 0.5490 -2.7610 23 1 7.1247 1.7023 -3.6961 24 1 8.4873 0.0660 -2.5364 25 1 6.2841 -0.5453 -3.3443 26 6 2.0835 -0.8123 1.2001 27 1 -0.3634 -1.0268 0.0436 28 1 -0.3633 0.5511 0.8673 29 1 -0.3633 0.4757 -0.9109 30 1 1.2664 1.9157 -1.7792 31 1 2.1489 3.1362 -1.0349 32 1 2.1922 -0.1694 -2.0796 33 1 1.4478 -1.6628 -1.4244 34 1 4.2425 -0.5995 -1.0600 35 1 3.6649 -2.2892 -1.0408 36 1 4.9078 -0.2502 4.2729 37 1 6.0269 1.8496 4.8979 38 1 7.2388 3.1668 3.2097 39 1 7.3522 2.3893 0.8827 40 1 5.4911 2.5732 -0.1582 41 1 1.4523 -1.6787 1.3982 42 1 2.1515 -0.1810 2.0860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364852671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:45 Heat of formation + Delta-G solvation = -99.796783 kcal Electronic energy + Delta-G solvation = -29820.929689 eV Core-core repulsion = 25892.038078 eV Total energy + Delta-G solvation = -3928.891611 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.02834 -37.67965 -37.04289 -36.28532 -34.87022 -33.99109 -33.59316 -31.98133 -30.06046 -29.34234 -29.26640 -26.01692 -25.19935 -23.16135 -21.92194 -21.60823 -21.07223 -19.12047 -18.36777 -18.02043 -17.37906 -16.81855 -16.35111 -15.90471 -15.07999 -14.94141 -14.60331 -14.29703 -14.15359 -13.77568 -13.54138 -13.35551 -13.20616 -12.96055 -12.71538 -12.51688 -12.47926 -12.23411 -12.13587 -11.55193 -11.26376 -11.18003 -11.10046 -11.03300 -10.98925 -10.89159 -10.79221 -10.63945 -10.47315 -10.41647 -9.74750 -9.39424 -9.29590 -9.26136 -9.07688 -8.31257 -8.03714 -7.65978 -7.35091 -4.71419 1.50232 2.39151 2.77841 3.05551 3.07889 3.20296 3.30059 3.75724 3.87833 3.90679 4.41901 4.42391 4.73123 4.78041 4.90570 5.18643 5.30035 5.39251 5.40105 5.51621 5.62470 5.75453 5.85904 5.91249 6.00071 6.03590 6.09612 6.17565 6.23096 6.40177 6.47583 6.68177 6.74639 7.01331 7.10672 7.11646 7.30132 7.43910 7.54606 7.63741 7.72453 7.80604 7.96602 8.12853 8.53798 8.67183 8.73421 9.88612 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009370 B = 0.007952 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.459315 B = 3520.366845 C = 4366.662219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 C 0.530 3.470 4 N -0.857 5.857 5 O -0.507 6.507 6 C -0.115 4.115 7 C 0.112 3.888 8 N -0.999 5.999 9 S 2.720 3.280 10 O -0.971 6.971 11 O -0.995 6.995 12 C -0.769 4.769 13 C 0.015 3.985 14 C -0.260 4.260 15 C -0.055 4.055 16 C -0.209 4.209 17 C 0.183 3.817 18 C -0.530 4.530 19 H 0.112 0.888 20 C 0.044 3.956 21 N -0.776 5.776 22 Si 1.055 2.945 23 H -0.273 1.273 24 H -0.271 1.271 25 H -0.269 1.269 26 C 0.149 3.851 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.394 0.606 31 H 0.401 0.599 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.307 0.693 41 H 0.070 0.930 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.253 -1.153 -5.635 12.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 C 0.313 3.687 4 N -0.421 5.421 5 O -0.380 6.380 6 C -0.154 4.154 7 C -0.013 4.013 8 N -0.835 5.835 9 S 2.820 3.180 10 O -0.962 6.962 11 O -0.986 6.986 12 C -0.864 4.864 13 C -0.005 4.005 14 C -0.281 4.281 15 C -0.074 4.074 16 C -0.228 4.228 17 C 0.178 3.822 18 C -0.557 4.557 19 H 0.130 0.870 20 C -0.181 4.181 21 N -0.397 5.397 22 Si 0.877 3.123 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.194 1.194 26 C 0.022 3.978 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.221 0.779 31 H 0.232 0.768 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.088 0.912 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.120 -1.383 -6.099 11.897 hybrid contribution -0.383 0.749 1.196 1.462 sum -10.504 -0.634 -4.904 11.609 Atomic orbital electron populations 1.21689 0.91760 1.03066 1.02444 1.22013 0.96612 0.93194 0.98418 1.20022 0.79609 0.86661 0.82396 1.43752 1.57798 1.17111 1.23464 1.90853 1.36278 1.75927 1.34895 1.22752 0.96751 0.99511 0.96359 1.21954 0.97920 1.01787 0.79671 1.58462 1.24271 1.84601 1.16135 1.00490 0.71692 0.74476 0.71325 1.93462 1.61140 1.71107 1.70472 1.93434 1.78356 1.79635 1.47198 1.29692 1.26254 1.28144 1.02326 1.20252 0.92802 0.93811 0.93620 1.20394 1.10534 0.99095 0.98038 1.20786 0.95973 0.96783 0.93850 1.21280 1.05522 1.00605 0.95439 1.16913 0.84603 0.89287 0.91395 1.21370 1.43893 0.99002 0.91419 0.87038 1.27008 0.93678 0.92637 1.04788 1.70385 1.20856 1.18205 1.30271 0.83792 0.78122 0.76711 0.73629 1.19820 1.19568 1.19450 1.21764 0.83166 0.96596 0.96250 0.91109 0.91849 0.91915 0.77879 0.76819 0.90212 0.89934 0.88951 0.91793 0.87616 0.88752 0.88934 0.87553 0.87875 0.91172 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 8.61 37.15 0.32 -0.89 16 2 C -0.10 -1.30 0.79 -153.39 -0.12 -1.42 16 3 C 0.53 8.56 6.67 -10.99 -0.07 8.49 16 4 N -0.86 -10.44 8.61 31.22 0.27 -10.17 16 5 O -0.51 -10.96 16.58 5.56 0.09 -10.87 16 6 C -0.11 -1.42 5.90 -24.90 -0.15 -1.57 16 7 C 0.11 1.93 6.31 -3.06 -0.02 1.92 16 8 N -1.00 -19.52 3.68 -111.29 -0.41 -19.93 16 9 S 2.72 63.65 5.31 -107.50 -0.57 63.08 16 10 O -0.97 -24.49 15.04 -57.18 -0.86 -25.35 16 11 O -1.00 -24.03 16.64 -57.18 -0.95 -24.98 16 12 C -0.77 -19.58 5.97 -38.87 -0.23 -19.81 16 13 C 0.02 0.37 9.54 -39.66 -0.38 -0.01 16 14 C -0.26 -6.11 10.05 -39.29 -0.39 -6.51 16 15 C -0.06 -1.31 10.02 -39.66 -0.40 -1.71 16 16 C -0.21 -5.37 7.97 -38.87 -0.31 -5.68 16 17 C 0.18 4.82 5.23 -106.82 -0.56 4.26 16 18 C -0.53 -13.43 6.10 -37.74 -0.23 -13.66 16 19 H 0.11 2.87 4.83 -52.49 -0.25 2.62 16 20 C 0.04 1.04 4.67 -17.34 -0.08 0.96 16 21 N -0.78 -18.95 12.42 55.55 0.69 -18.26 16 22 Si 1.05 20.52 30.00 -169.99 -5.10 15.42 16 23 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 24 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 25 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 26 C 0.15 2.46 5.67 -2.41 -0.01 2.44 16 27 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.44 7.92 -51.93 -0.41 0.03 16 30 H 0.39 3.33 8.30 -40.82 -0.34 2.99 16 31 H 0.40 5.00 8.93 -40.82 -0.36 4.63 16 32 H 0.08 0.87 7.55 -51.93 -0.39 0.48 16 33 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 34 H 0.09 1.84 5.35 -51.93 -0.28 1.56 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.11 2.41 7.32 -52.49 -0.38 2.03 16 37 H 0.09 1.94 8.06 -52.48 -0.42 1.52 16 38 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.11 2.74 6.72 -52.49 -0.35 2.39 16 40 H 0.31 7.99 6.78 -40.82 -0.28 7.71 16 41 H 0.07 0.97 8.01 -51.93 -0.42 0.56 16 42 H 0.08 1.53 7.39 -51.93 -0.38 1.14 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -33.25 350.74 -9.37 -42.62 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -5.18 Total: 16.33 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: -2.64 Total: -33.18 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.55 Total: -48.35 kcal Atomic # 8 Polarization: -59.48 SS G_CDS: -1.72 Total: -61.20 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.10 Total: 15.42 kcal Atomic # 16 Polarization: 63.65 SS G_CDS: -0.57 Total: 63.08 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.25 -9.37 -42.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364852671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.179 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds