Wall clock time and date at job start Tue Mar 31 2020 20:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 110.88802 * 2 1 4 4 N 1.34779 * 119.99976 * 297.56747 * 3 2 1 5 5 O 1.21280 * 119.99978 * 117.57662 * 3 2 1 6 6 C 1.55159 * 111.00503 * 236.11497 * 2 1 3 7 7 C 1.54324 * 102.94487 * 206.42758 * 6 2 1 8 8 N 1.47025 * 107.26876 * 22.19219 * 7 6 2 9 9 S 1.65598 * 125.64632 * 181.02308 * 8 7 6 10 10 O 1.42097 * 106.40293 * 342.68445 * 9 8 7 11 11 O 1.42095 * 106.40545 * 209.76555 * 9 8 7 12 12 C 1.76200 * 107.21861 * 96.22316 * 9 8 7 13 13 C 1.37641 * 120.12724 * 113.03808 * 12 9 8 14 14 C 1.38610 * 120.24811 * 179.97438 * 13 12 9 15 15 C 1.38656 * 120.50355 * 0.05216 * 14 13 12 16 16 C 1.37604 * 120.24770 * 359.66607 * 15 14 13 17 17 C 1.40703 * 120.12882 * 293.06533 * 12 9 8 18 18 C 1.41393 * 120.24410 * 359.97438 * 17 12 9 19 19 H 1.08000 * 119.99880 * 331.71035 * 18 17 12 20 20 C 1.39941 * 119.99822 * 151.70783 * 18 17 12 21 21 N 1.30824 * 120.00372 * 335.34888 * 20 18 17 22 22 Si 1.86797 * 119.99842 * 155.34999 * 20 18 17 23 23 H 1.48502 * 109.47277 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.47002 * 300.00012 * 22 20 18 25 25 H 1.48504 * 109.47516 * 59.99711 * 22 20 18 26 26 C 1.47423 * 108.70521 * 1.28711 * 8 7 6 27 27 H 1.09004 * 109.47464 * 182.42915 * 1 2 3 28 28 H 1.08997 * 109.47150 * 302.43290 * 1 2 3 29 29 H 1.08998 * 109.47153 * 62.42758 * 1 2 3 30 30 H 0.97004 * 119.99553 * 0.02562 * 4 3 2 31 31 H 0.96993 * 120.00210 * 180.02562 * 4 3 2 32 32 H 1.08996 * 110.72069 * 88.06169 * 6 2 1 33 33 H 1.09003 * 110.86919 * 324.85978 * 6 2 1 34 34 H 1.08998 * 109.88068 * 262.77952 * 7 6 2 35 35 H 1.09002 * 109.88137 * 141.60933 * 7 6 2 36 36 H 1.08001 * 119.87373 * 0.02596 * 13 12 9 37 37 H 1.08005 * 119.74934 * 180.02562 * 14 13 12 38 38 H 1.08001 * 119.87841 * 179.97438 * 15 14 13 39 39 H 1.07992 * 120.12699 * 180.30017 * 16 15 14 40 40 H 0.96997 * 119.99475 * 354.16749 * 21 20 18 41 41 H 1.09006 * 110.36176 * 94.48075 * 26 8 7 42 42 H 1.08992 * 110.36757 * 216.80086 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0672 1.4079 0.0000 4 7 1.8028 2.2301 -1.0347 5 8 2.7377 1.8011 0.9310 6 6 2.0861 -0.8076 -1.2025 7 6 3.4674 -1.2740 -0.6964 8 7 3.4270 -1.2434 0.7730 9 16 4.6809 -1.6352 1.7812 10 8 5.6110 -2.3704 0.9979 11 8 4.0948 -2.1432 2.9719 12 6 5.4835 -0.1305 2.2244 13 6 5.4371 0.3204 3.5241 14 6 6.0680 1.5035 3.8756 15 6 6.7512 2.2463 2.9247 16 6 6.8155 1.8117 1.6207 17 6 6.1738 0.6150 1.2511 18 6 6.2281 0.1617 -0.0871 19 1 6.1707 -0.8952 -0.3019 20 6 6.3562 1.0824 -1.1331 21 7 5.9543 2.3168 -0.9710 22 14 7.1011 0.5490 -2.7610 23 1 7.1247 1.7023 -3.6961 24 1 8.4873 0.0660 -2.5364 25 1 6.2841 -0.5453 -3.3443 26 6 2.0835 -0.8123 1.2001 27 1 -0.3634 -1.0268 0.0436 28 1 -0.3633 0.5511 0.8673 29 1 -0.3633 0.4757 -0.9109 30 1 1.2664 1.9157 -1.7792 31 1 2.1489 3.1362 -1.0349 32 1 2.1922 -0.1694 -2.0796 33 1 1.4478 -1.6628 -1.4244 34 1 4.2425 -0.5995 -1.0600 35 1 3.6649 -2.2892 -1.0408 36 1 4.9078 -0.2502 4.2729 37 1 6.0269 1.8496 4.8979 38 1 7.2388 3.1668 3.2097 39 1 7.3522 2.3893 0.8827 40 1 5.4911 2.5732 -0.1582 41 1 1.4523 -1.6787 1.3982 42 1 2.1515 -0.1810 2.0860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364852671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:45 Heat of formation + Delta-G solvation = -125.815949 kcal Electronic energy + Delta-G solvation = -29822.057965 eV Core-core repulsion = 25892.038078 eV Total energy + Delta-G solvation = -3930.019887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.23747 -39.57200 -38.37546 -38.17189 -36.78502 -35.83838 -34.83218 -33.10993 -31.95475 -31.24588 -30.46525 -27.23907 -26.90067 -24.36759 -23.57510 -23.14710 -22.93199 -20.26980 -20.17845 -19.75366 -18.79959 -18.28261 -17.87520 -17.38464 -16.74511 -16.69024 -16.10166 -15.79462 -15.61097 -15.48992 -15.12725 -14.71669 -14.56680 -14.41006 -14.28833 -13.99324 -13.82861 -13.66325 -13.36977 -13.10913 -13.09859 -13.06460 -12.83107 -12.77181 -12.44986 -12.24745 -12.22844 -11.99730 -11.93610 -11.68495 -11.58491 -11.08765 -10.91712 -10.65439 -10.46846 -10.01876 -9.74447 -9.59783 -9.25406 -6.64593 -0.27270 0.46860 0.90436 1.48512 1.60753 1.78630 1.85509 2.22361 2.26475 2.58648 2.67825 2.92698 3.27770 3.37173 3.55864 3.82421 3.94656 4.17411 4.22012 4.29467 4.40580 4.46825 4.59028 4.59586 4.76691 4.79797 4.83429 4.90352 5.00307 5.08401 5.14899 5.20350 5.29413 5.36185 5.38085 5.51735 5.55512 5.67607 5.80271 5.85646 6.01668 6.04151 6.20823 6.62799 6.63667 6.82575 7.55441 7.94625 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009370 B = 0.007952 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.459315 B = 3520.366845 C = 4366.662219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 C 0.521 3.479 4 N -0.838 5.838 5 O -0.574 6.574 6 C -0.101 4.101 7 C 0.097 3.903 8 N -0.999 5.999 9 S 2.734 3.266 10 O -0.996 6.996 11 O -1.009 7.009 12 C -0.792 4.792 13 C -0.003 4.003 14 C -0.266 4.266 15 C -0.057 4.057 16 C -0.234 4.234 17 C 0.159 3.841 18 C -0.541 4.541 19 H 0.103 0.897 20 C 0.019 3.981 21 N -0.779 5.779 22 Si 1.093 2.907 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.243 1.243 26 C 0.135 3.865 27 H 0.095 0.905 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.415 0.585 31 H 0.400 0.600 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.097 0.903 40 H 0.290 0.710 41 H 0.102 0.898 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.460 -1.731 -7.725 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.093 4.093 3 C 0.306 3.694 4 N -0.402 5.402 5 O -0.452 6.452 6 C -0.140 4.140 7 C -0.028 4.028 8 N -0.837 5.837 9 S 2.833 3.167 10 O -0.987 6.987 11 O -1.000 7.000 12 C -0.886 4.886 13 C -0.023 4.023 14 C -0.286 4.286 15 C -0.076 4.076 16 C -0.254 4.254 17 C 0.154 3.846 18 C -0.567 4.567 19 H 0.121 0.879 20 C -0.202 4.202 21 N -0.400 5.400 22 Si 0.910 3.090 23 H -0.187 1.187 24 H -0.199 1.199 25 H -0.166 1.166 26 C 0.009 3.991 27 H 0.114 0.886 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.246 0.754 31 H 0.230 0.770 32 H 0.117 0.883 33 H 0.143 0.857 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.134 0.866 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.120 0.880 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.360 -1.944 -8.211 14.966 hybrid contribution 0.256 0.963 1.900 2.146 sum -12.104 -0.981 -6.311 13.686 Atomic orbital electron populations 1.21744 0.87837 1.05032 1.03743 1.22017 0.99330 0.90756 0.97230 1.20665 0.78686 0.88064 0.82030 1.43612 1.56896 1.16620 1.23113 1.90834 1.39406 1.77386 1.37529 1.22840 0.94054 1.01072 0.96000 1.22194 1.00418 1.01990 0.78190 1.58141 1.24246 1.84326 1.16944 0.99872 0.71858 0.73735 0.71258 1.93414 1.62691 1.71669 1.70884 1.93401 1.78536 1.79765 1.48273 1.30134 1.26800 1.28864 1.02789 1.20570 0.93249 0.94659 0.93798 1.20781 1.09644 0.98648 0.99496 1.21132 0.95567 0.97710 0.93187 1.21337 1.06664 1.01122 0.96272 1.17214 0.85172 0.89888 0.92288 1.21401 1.44816 0.98807 0.91696 0.87911 1.28205 0.92930 0.91946 1.07136 1.70479 1.21466 1.18695 1.29349 0.83346 0.77590 0.77541 0.70522 1.18711 1.19880 1.16620 1.22123 0.82187 0.97906 0.96842 0.88647 0.92488 0.88955 0.75388 0.77002 0.88288 0.85666 0.92034 0.90648 0.86616 0.85714 0.86014 0.88537 0.89752 0.88023 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 8.61 71.98 0.62 -1.14 16 2 C -0.09 -2.14 0.79 -51.46 -0.04 -2.18 16 3 C 0.52 16.45 6.67 87.66 0.58 17.04 16 4 N -0.84 -19.03 8.61 -173.53 -1.49 -20.53 16 5 O -0.57 -25.71 16.58 -3.03 -0.05 -25.76 16 6 C -0.10 -2.11 5.90 31.78 0.19 -1.93 16 7 C 0.10 3.22 6.31 86.73 0.55 3.77 16 8 N -1.00 -38.89 3.68 -506.00 -1.86 -40.75 16 9 S 2.73 131.24 5.31 -56.49 -0.30 130.94 16 10 O -1.00 -51.59 15.04 -128.00 -1.93 -53.52 16 11 O -1.01 -49.68 16.64 -128.00 -2.13 -51.80 16 12 C -0.79 -41.91 5.97 22.73 0.14 -41.77 16 13 C 0.00 -0.15 9.54 22.22 0.21 0.06 16 14 C -0.27 -12.59 10.05 22.46 0.23 -12.37 16 15 C -0.06 -2.77 10.02 22.22 0.22 -2.55 16 16 C -0.23 -12.52 7.97 22.73 0.18 -12.33 16 17 C 0.16 8.73 5.23 -21.29 -0.11 8.61 16 18 C -0.54 -28.24 6.10 23.46 0.14 -28.10 16 19 H 0.10 5.47 4.83 -2.91 -0.01 5.46 16 20 C 0.02 0.92 4.67 85.26 0.40 1.32 16 21 N -0.78 -38.89 12.42 21.83 0.27 -38.62 16 22 Si 1.09 40.66 30.00 68.60 2.06 42.72 16 23 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 24 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 25 H -0.24 -7.94 7.11 99.48 0.71 -7.24 16 26 C 0.13 4.33 5.67 86.93 0.49 4.82 16 27 H 0.09 0.94 8.10 -2.38 -0.02 0.92 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 0.78 7.92 -2.39 -0.02 0.76 16 30 H 0.41 5.63 8.30 -92.71 -0.77 4.86 16 31 H 0.40 9.68 8.93 -92.71 -0.83 8.85 16 32 H 0.10 1.72 7.55 -2.39 -0.02 1.71 16 33 H 0.13 1.64 8.04 -2.39 -0.02 1.62 16 34 H 0.06 2.44 5.35 -2.39 -0.01 2.42 16 35 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.12 5.44 7.32 -2.91 -0.02 5.41 16 37 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 38 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16 39 H 0.10 5.21 6.72 -2.91 -0.02 5.19 16 40 H 0.29 15.71 6.78 -92.71 -0.63 15.08 16 41 H 0.10 2.58 8.01 -2.38 -0.02 2.56 16 42 H 0.05 2.03 7.39 -2.39 -0.02 2.01 16 Total: -1.00 -77.46 350.74 -2.00 -79.46 By element: Atomic # 1 Polarization: 44.97 SS G_CDS: -0.37 Total: 44.60 kcal Atomic # 6 Polarization: -70.55 SS G_CDS: 3.80 Total: -66.75 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -3.08 Total: -99.90 kcal Atomic # 8 Polarization: -126.98 SS G_CDS: -4.10 Total: -131.08 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.06 Total: 42.72 kcal Atomic # 16 Polarization: 131.24 SS G_CDS: -0.30 Total: 130.94 kcal Total: -77.46 -2.00 -79.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364852671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.356 kcal (2) G-P(sol) polarization free energy of solvation -77.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds