Wall clock time and date at job start Tue Mar 31 2020 20:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 108.89984 * 2 1 4 4 C 1.34772 * 119.99731 * 59.29840 * 3 2 1 5 5 O 1.21586 * 120.00597 * 359.97438 * 4 3 2 6 6 N 1.34784 * 119.99714 * 179.97438 * 4 3 2 7 7 C 1.39955 * 119.99692 * 185.15699 * 6 4 3 8 8 C 1.39287 * 119.94432 * 214.22416 * 7 6 4 9 9 C 1.38493 * 120.42932 * 179.97438 * 8 7 6 10 10 C 1.37683 * 120.31910 * 0.02575 * 9 8 7 11 11 C 1.40738 * 119.88473 * 359.70073 * 10 9 8 12 12 C 1.41413 * 120.21037 * 180.27720 * 11 10 9 13 13 H 1.08002 * 119.99384 * 205.31930 * 12 11 10 14 14 C 1.39926 * 119.99952 * 25.32651 * 12 11 10 15 15 N 1.30831 * 120.00278 * 16.67114 * 14 12 11 16 16 Si 1.86802 * 119.99995 * 196.67799 * 14 12 11 17 17 H 1.48502 * 109.47262 * 89.99218 * 16 14 12 18 18 H 1.48502 * 109.47080 * 209.99840 * 16 14 12 19 19 H 1.48503 * 109.46602 * 329.99434 * 16 14 12 20 20 C 1.38238 * 119.95027 * 34.20957 * 7 6 4 21 21 C 1.52976 * 108.92888 * 118.68496 * 2 1 3 22 22 C 1.54945 * 108.74569 * 90.56353 * 21 2 1 23 23 S 1.83848 * 101.10383 * 42.03435 * 22 21 2 24 24 O 1.42094 * 109.61063 * 210.98358 * 23 22 21 25 25 O 1.42101 * 109.61362 * 77.02582 * 23 22 21 26 26 C 1.53618 * 108.92828 * 241.31289 * 2 1 3 27 27 H 1.09004 * 109.47056 * 60.69946 * 1 2 3 28 28 H 1.09000 * 109.47256 * 180.69986 * 1 2 3 29 29 H 1.09002 * 109.46880 * 300.70248 * 1 2 3 30 30 H 0.96991 * 119.99839 * 239.29848 * 3 2 1 31 31 H 0.96991 * 120.00089 * 5.16098 * 6 4 3 32 32 H 1.08001 * 119.78719 * 0.02562 * 8 7 6 33 33 H 1.08001 * 119.83727 * 180.02562 * 9 8 7 34 34 H 1.08001 * 120.05473 * 179.97438 * 10 9 8 35 35 H 0.96997 * 120.00219 * 180.02562 * 15 14 12 36 36 H 1.07994 * 120.15691 * 359.97438 * 20 7 6 37 37 H 1.08995 * 109.65148 * 210.51626 * 21 2 1 38 38 H 1.09002 * 109.65120 * 330.83235 * 21 2 1 39 39 H 1.08995 * 111.17502 * 284.05741 * 22 21 2 40 40 H 1.08994 * 111.09175 * 159.97108 * 22 21 2 41 41 H 1.08996 * 110.27650 * 0.74054 * 26 2 1 42 42 H 1.09007 * 110.26819 * 122.70820 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0046 1.3860 0.0000 4 6 1.6590 2.2165 1.0036 5 8 0.9531 1.8157 1.9088 6 7 2.0961 3.4915 1.0039 7 6 1.8282 4.3228 2.0975 8 6 1.5997 5.6822 1.8980 9 6 1.3332 6.5139 2.9729 10 6 1.2917 6.0052 4.2516 11 6 1.5149 4.6326 4.4679 12 6 1.4682 4.1019 5.7778 13 1 2.0133 3.2001 6.0148 14 6 0.7156 4.7449 6.7668 15 7 -0.1911 5.6257 6.4297 16 14 1.0058 4.3459 8.5685 17 1 2.0435 5.2561 9.1162 18 1 -0.2594 4.5251 9.3252 19 1 1.4639 2.9391 8.6963 20 6 1.7905 3.7933 3.3739 21 6 2.0263 -0.6946 1.2694 22 6 2.2015 -2.2055 0.9743 23 16 2.9765 -2.1533 -0.6920 24 8 2.5904 -3.3021 -1.4338 25 8 4.3499 -1.8099 -0.5688 26 6 2.0284 -0.6975 -1.2748 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3634 -1.0276 0.0126 29 1 -0.3633 0.5247 0.8836 30 1 2.5674 1.7059 -0.7222 31 1 2.5961 3.8330 0.2462 32 1 1.6297 6.0903 0.8985 33 1 1.1570 7.5664 2.8071 34 1 1.0839 6.6577 5.0868 35 1 -0.7125 6.0718 7.1153 36 1 1.9669 2.7393 3.5295 37 1 2.9817 -0.2660 1.5721 38 1 1.2973 -0.5617 2.0689 39 1 1.2383 -2.7148 0.9429 40 1 2.8659 -2.6727 1.7011 41 1 1.1839 -1.0166 -1.8855 42 1 2.6735 -0.0281 -1.8439 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413568445.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:50 Heat of formation + Delta-G solvation = -65.686496 kcal Electronic energy + Delta-G solvation = -27165.854380 eV Core-core repulsion = 23238.441901 eV Total energy + Delta-G solvation = -3927.412478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.52720 -38.27502 -37.37175 -36.76053 -36.31342 -34.40776 -33.34714 -32.62388 -30.47514 -29.81997 -28.15483 -27.80339 -25.29829 -24.62167 -22.39056 -20.97770 -20.41291 -19.80981 -19.23362 -18.06320 -17.72420 -17.07528 -16.59677 -16.27229 -15.80590 -15.40147 -15.02149 -14.85186 -14.54603 -14.48189 -14.22218 -13.79146 -13.28006 -13.13794 -12.96304 -12.86872 -12.64338 -12.42440 -12.36207 -12.24541 -12.12266 -11.82931 -11.69462 -11.40334 -11.23429 -11.13218 -11.08583 -10.68674 -10.55748 -10.49507 -10.10573 -9.74092 -9.55763 -9.25582 -9.09289 -8.88437 -7.43945 -6.88534 -6.71215 -4.33151 -0.31502 2.08175 2.67386 2.80600 2.95956 3.09521 3.13600 3.19601 3.21473 3.57494 3.65229 3.92921 3.96486 4.21201 4.36996 4.39343 4.54180 4.65387 4.68440 4.91185 5.16316 5.31301 5.48003 5.56464 5.71923 5.72587 6.00109 6.20524 6.24299 6.39497 6.44418 6.70596 6.77886 7.04212 7.08887 7.23737 7.32311 7.66897 7.80040 7.99564 8.09641 8.24323 8.38584 8.66187 8.87788 8.96320 9.01465 10.23088 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.002847 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.638391 B = 9831.184786 C =10851.261071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.212 3.788 3 N -0.746 5.746 4 C 0.699 3.301 5 O -0.556 6.556 6 N -0.680 5.680 7 C 0.169 3.831 8 C -0.264 4.264 9 C -0.091 4.091 10 C -0.174 4.174 11 C 0.120 3.880 12 C -0.458 4.458 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.794 5.794 16 Si 0.908 3.092 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.262 1.262 20 C -0.210 4.210 21 C -0.134 4.134 22 C -0.570 4.570 23 S 2.382 3.618 24 O -0.939 6.939 25 O -0.929 6.929 26 C -0.597 4.597 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.395 0.605 31 H 0.394 0.606 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.280 0.720 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.149 0.851 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.059 -10.586 -13.224 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.124 3.876 3 N -0.404 5.404 4 C 0.400 3.600 5 O -0.431 6.431 6 N -0.326 5.326 7 C 0.077 3.923 8 C -0.286 4.286 9 C -0.110 4.110 10 C -0.194 4.194 11 C 0.117 3.883 12 C -0.487 4.487 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.420 5.420 16 Si 0.733 3.267 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.186 1.186 20 C -0.231 4.231 21 C -0.173 4.173 22 C -0.701 4.701 23 S 2.565 3.435 24 O -0.936 6.936 25 O -0.926 6.926 26 C -0.726 4.726 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.230 0.770 31 H 0.228 0.772 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.136 0.864 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.138 0.862 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.167 0.833 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.926 -11.413 -12.750 17.360 hybrid contribution -0.144 0.819 0.278 0.876 sum 2.782 -10.594 -12.471 16.599 Atomic orbital electron populations 1.22496 0.92566 1.02829 1.05003 1.19981 0.96171 0.81323 0.90144 1.45467 1.57194 1.10479 1.27261 1.15945 0.80587 0.81043 0.82457 1.90952 1.40285 1.75384 1.36503 1.42607 1.58259 1.10168 1.21591 1.17208 1.01079 0.88803 0.85247 1.20003 1.18641 0.92544 0.97372 1.20445 1.00233 0.97098 0.93248 1.21342 1.06880 0.95695 0.95479 1.17484 0.87633 0.90981 0.92166 1.19554 1.26008 1.09532 0.93635 0.90494 1.25890 0.93108 0.93697 1.01475 1.69832 1.15112 1.21248 1.35759 0.86311 0.78574 0.80084 0.81723 1.19313 1.20360 1.18639 1.20936 1.13154 0.98958 0.90086 1.22563 1.05925 0.89282 0.99557 1.30515 1.14028 1.04023 1.21582 1.09366 0.77030 0.77276 0.79810 1.93615 1.84500 1.45823 1.69623 1.93651 1.28843 1.84220 1.85855 1.30812 1.15626 1.19942 1.06233 0.92065 0.91589 0.88530 0.77025 0.77249 0.89440 0.89107 0.86393 0.90959 0.87450 0.88898 0.86211 0.84245 0.84159 0.83255 0.83964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 7.84 37.16 0.29 -1.43 16 2 C 0.21 2.01 0.94 -131.51 -0.12 1.89 16 3 N -0.75 -8.19 5.02 -52.12 -0.26 -8.45 16 4 C 0.70 11.38 7.68 -86.92 -0.67 10.71 16 5 O -0.56 -11.26 10.68 5.29 0.06 -11.21 16 6 N -0.68 -11.37 5.34 -14.27 -0.08 -11.45 16 7 C 0.17 3.69 6.26 -83.76 -0.52 3.16 16 8 C -0.26 -5.68 9.97 -39.10 -0.39 -6.07 16 9 C -0.09 -2.10 10.02 -39.69 -0.40 -2.50 16 10 C -0.17 -4.51 8.69 -38.84 -0.34 -4.85 16 11 C 0.12 3.25 5.57 -106.85 -0.59 2.65 16 12 C -0.46 -12.36 9.05 -37.74 -0.34 -12.70 16 13 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 14 C 0.08 1.93 5.16 -17.35 -0.09 1.84 16 15 N -0.79 -20.74 10.94 55.55 0.61 -20.13 16 16 Si 0.91 18.90 29.59 -169.99 -5.03 13.87 16 17 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 18 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 20 C -0.21 -5.26 8.39 -38.69 -0.32 -5.59 16 21 C -0.13 -1.36 4.37 -25.72 -0.11 -1.47 16 22 C -0.57 -4.01 7.46 38.18 0.28 -3.72 16 23 S 2.38 19.06 6.05 -107.50 -0.65 18.41 16 24 O -0.94 -10.26 18.16 -57.67 -1.05 -11.31 16 25 O -0.93 -10.82 18.16 -57.67 -1.05 -11.86 16 26 C -0.60 -3.70 6.69 37.48 0.25 -3.45 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 1.34 5.98 -51.93 -0.31 1.03 16 30 H 0.40 3.07 8.00 -40.82 -0.33 2.74 16 31 H 0.39 4.99 8.84 -40.82 -0.36 4.63 16 32 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.12 3.15 6.17 -52.49 -0.32 2.82 16 35 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 36 H 0.11 2.75 6.46 -52.49 -0.34 2.41 16 37 H 0.09 1.03 8.04 -51.93 -0.42 0.62 16 38 H 0.12 1.46 7.01 -51.93 -0.36 1.10 16 39 H 0.14 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.14 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.15 0.63 7.63 -51.93 -0.40 0.24 16 42 H 0.14 0.62 7.37 -51.93 -0.38 0.24 16 LS Contribution 353.72 15.07 5.33 5.33 Total: -1.00 -35.92 353.72 -10.50 -46.42 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -5.31 Total: 11.92 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -3.08 Total: -21.54 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.27 Total: -40.04 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -2.04 Total: -34.38 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Atomic # 16 Polarization: 19.06 SS G_CDS: -0.65 Total: 18.41 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.92 -10.50 -46.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413568445.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.265 kcal (2) G-P(sol) polarization free energy of solvation -35.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds