Wall clock time and date at job start Tue Mar 31 2020 20:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 108.89984 * 2 1 4 4 C 1.34772 * 119.99731 * 59.29840 * 3 2 1 5 5 O 1.21586 * 120.00597 * 359.97438 * 4 3 2 6 6 N 1.34784 * 119.99714 * 179.97438 * 4 3 2 7 7 C 1.39955 * 119.99692 * 185.15699 * 6 4 3 8 8 C 1.39287 * 119.94432 * 214.22416 * 7 6 4 9 9 C 1.38493 * 120.42932 * 179.97438 * 8 7 6 10 10 C 1.37683 * 120.31910 * 0.02575 * 9 8 7 11 11 C 1.40738 * 119.88473 * 359.70073 * 10 9 8 12 12 C 1.41413 * 120.21037 * 180.27720 * 11 10 9 13 13 H 1.08002 * 119.99384 * 205.31930 * 12 11 10 14 14 C 1.39926 * 119.99952 * 25.32651 * 12 11 10 15 15 N 1.30831 * 120.00278 * 16.67114 * 14 12 11 16 16 Si 1.86802 * 119.99995 * 196.67799 * 14 12 11 17 17 H 1.48502 * 109.47262 * 89.99218 * 16 14 12 18 18 H 1.48502 * 109.47080 * 209.99840 * 16 14 12 19 19 H 1.48503 * 109.46602 * 329.99434 * 16 14 12 20 20 C 1.38238 * 119.95027 * 34.20957 * 7 6 4 21 21 C 1.52976 * 108.92888 * 118.68496 * 2 1 3 22 22 C 1.54945 * 108.74569 * 90.56353 * 21 2 1 23 23 S 1.83848 * 101.10383 * 42.03435 * 22 21 2 24 24 O 1.42094 * 109.61063 * 210.98358 * 23 22 21 25 25 O 1.42101 * 109.61362 * 77.02582 * 23 22 21 26 26 C 1.53618 * 108.92828 * 241.31289 * 2 1 3 27 27 H 1.09004 * 109.47056 * 60.69946 * 1 2 3 28 28 H 1.09000 * 109.47256 * 180.69986 * 1 2 3 29 29 H 1.09002 * 109.46880 * 300.70248 * 1 2 3 30 30 H 0.96991 * 119.99839 * 239.29848 * 3 2 1 31 31 H 0.96991 * 120.00089 * 5.16098 * 6 4 3 32 32 H 1.08001 * 119.78719 * 0.02562 * 8 7 6 33 33 H 1.08001 * 119.83727 * 180.02562 * 9 8 7 34 34 H 1.08001 * 120.05473 * 179.97438 * 10 9 8 35 35 H 0.96997 * 120.00219 * 180.02562 * 15 14 12 36 36 H 1.07994 * 120.15691 * 359.97438 * 20 7 6 37 37 H 1.08995 * 109.65148 * 210.51626 * 21 2 1 38 38 H 1.09002 * 109.65120 * 330.83235 * 21 2 1 39 39 H 1.08995 * 111.17502 * 284.05741 * 22 21 2 40 40 H 1.08994 * 111.09175 * 159.97108 * 22 21 2 41 41 H 1.08996 * 110.27650 * 0.74054 * 26 2 1 42 42 H 1.09007 * 110.26819 * 122.70820 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0046 1.3860 0.0000 4 6 1.6590 2.2165 1.0036 5 8 0.9531 1.8157 1.9088 6 7 2.0961 3.4915 1.0039 7 6 1.8282 4.3228 2.0975 8 6 1.5997 5.6822 1.8980 9 6 1.3332 6.5139 2.9729 10 6 1.2917 6.0052 4.2516 11 6 1.5149 4.6326 4.4679 12 6 1.4682 4.1019 5.7778 13 1 2.0133 3.2001 6.0148 14 6 0.7156 4.7449 6.7668 15 7 -0.1911 5.6257 6.4297 16 14 1.0058 4.3459 8.5685 17 1 2.0435 5.2561 9.1162 18 1 -0.2594 4.5251 9.3252 19 1 1.4639 2.9391 8.6963 20 6 1.7905 3.7933 3.3739 21 6 2.0263 -0.6946 1.2694 22 6 2.2015 -2.2055 0.9743 23 16 2.9765 -2.1533 -0.6920 24 8 2.5904 -3.3021 -1.4338 25 8 4.3499 -1.8099 -0.5688 26 6 2.0284 -0.6975 -1.2748 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3634 -1.0276 0.0126 29 1 -0.3633 0.5247 0.8836 30 1 2.5674 1.7059 -0.7222 31 1 2.5961 3.8330 0.2462 32 1 1.6297 6.0903 0.8985 33 1 1.1570 7.5664 2.8071 34 1 1.0839 6.6577 5.0868 35 1 -0.7125 6.0718 7.1153 36 1 1.9669 2.7393 3.5295 37 1 2.9817 -0.2660 1.5721 38 1 1.2973 -0.5617 2.0689 39 1 1.2383 -2.7148 0.9429 40 1 2.8659 -2.6727 1.7011 41 1 1.1839 -1.0166 -1.8855 42 1 2.6735 -0.0281 -1.8439 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413568445.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:49 Heat of formation + Delta-G solvation = -93.634000 kcal Electronic energy + Delta-G solvation = -27167.066275 eV Core-core repulsion = 23238.441901 eV Total energy + Delta-G solvation = -3928.624373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74354 -39.66110 -38.29803 -38.02799 -37.09334 -36.07277 -34.92186 -33.80740 -31.72007 -31.31190 -29.50581 -28.80460 -27.21992 -25.40985 -23.77613 -22.75833 -21.91990 -20.86273 -20.00896 -19.46244 -19.23025 -17.95166 -17.43513 -17.32395 -17.04344 -16.66873 -16.46375 -16.28234 -16.12033 -15.63658 -15.12886 -14.90711 -14.75913 -14.56316 -14.02722 -13.89330 -13.74439 -13.56019 -13.36703 -13.19803 -13.16225 -13.12350 -12.92277 -12.81378 -12.60417 -12.51205 -12.20824 -12.11805 -11.92444 -11.82666 -11.51833 -11.38564 -11.15616 -10.88440 -10.59404 -10.18841 -9.35209 -8.66125 -8.58091 -6.34109 -0.96508 0.95810 1.06148 1.36958 1.41058 1.50398 1.51373 1.73683 2.20436 2.23366 2.53065 2.76773 2.96338 3.26077 3.28293 3.50967 3.67078 3.78476 3.88174 3.97263 4.29722 4.49736 4.62760 4.66218 4.67147 4.75136 4.78961 4.93022 5.07871 5.12530 5.15876 5.16544 5.23138 5.33850 5.41166 5.49478 5.76597 5.85967 6.09120 6.14798 6.21150 6.40408 6.72413 6.97395 7.04282 7.13108 7.65244 8.36060 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.002847 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.638391 B = 9831.184786 C =10851.261071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.206 3.794 3 N -0.724 5.724 4 C 0.695 3.305 5 O -0.599 6.599 6 N -0.672 5.672 7 C 0.180 3.820 8 C -0.253 4.253 9 C -0.091 4.091 10 C -0.202 4.202 11 C 0.090 3.910 12 C -0.501 4.501 13 H 0.066 0.934 14 C 0.036 3.964 15 N -0.826 5.826 16 Si 0.982 3.018 17 H -0.258 1.258 18 H -0.266 1.266 19 H -0.263 1.263 20 C -0.233 4.233 21 C -0.139 4.139 22 C -0.561 4.561 23 S 2.401 3.599 24 O -0.966 6.966 25 O -0.968 6.968 26 C -0.577 4.577 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.415 0.585 31 H 0.417 0.583 32 H 0.130 0.870 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.288 0.712 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.164 0.836 40 H 0.150 0.850 41 H 0.181 0.819 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 -10.846 -15.573 19.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.118 3.882 3 N -0.383 5.383 4 C 0.396 3.604 5 O -0.476 6.476 6 N -0.321 5.321 7 C 0.086 3.914 8 C -0.275 4.275 9 C -0.110 4.110 10 C -0.222 4.222 11 C 0.087 3.913 12 C -0.531 4.531 13 H 0.084 0.916 14 C -0.179 4.179 15 N -0.452 5.452 16 Si 0.803 3.197 17 H -0.183 1.183 18 H -0.190 1.190 19 H -0.187 1.187 20 C -0.255 4.255 21 C -0.179 4.179 22 C -0.692 4.692 23 S 2.587 3.413 24 O -0.963 6.963 25 O -0.965 6.965 26 C -0.707 4.707 27 H 0.092 0.908 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.253 0.747 31 H 0.255 0.745 32 H 0.148 0.852 33 H 0.138 0.862 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.182 0.818 40 H 0.168 0.832 41 H 0.199 0.801 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.006 -11.706 -15.188 19.409 hybrid contribution -0.180 0.892 0.836 1.236 sum 2.826 -10.813 -14.352 18.190 Atomic orbital electron populations 1.22485 0.92689 1.04299 1.03489 1.20162 0.96182 0.80414 0.91434 1.45303 1.56391 1.10425 1.26191 1.16157 0.80215 0.81111 0.82942 1.90954 1.42109 1.76072 1.38496 1.42384 1.58587 1.10119 1.20995 1.17227 0.98908 0.89779 0.85531 1.20428 1.16156 0.92014 0.98856 1.20806 0.98879 0.98885 0.92447 1.21300 1.09168 0.95189 0.96543 1.17819 0.88583 0.91969 0.92904 1.19753 1.27875 1.10322 0.95125 0.91624 1.26712 0.92174 0.93259 1.05727 1.69879 1.15719 1.22154 1.37454 0.85218 0.78974 0.79737 0.75819 1.18268 1.19039 1.18727 1.20908 1.14982 0.98039 0.91576 1.22488 1.04275 0.91666 0.99458 1.30511 1.15552 1.01970 1.21148 1.08654 0.76111 0.77080 0.79439 1.93583 1.84712 1.47591 1.70369 1.93601 1.31719 1.84803 1.86402 1.30712 1.16668 1.18375 1.04930 0.90808 0.88716 0.92748 0.74706 0.74535 0.85249 0.86187 0.88046 0.90180 0.89290 0.90450 0.88841 0.81812 0.83165 0.80085 0.81305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 7.84 71.98 0.56 -2.58 16 2 C 0.21 3.48 0.94 3.81 0.00 3.48 16 3 N -0.72 -14.43 5.02 -437.09 -2.19 -16.63 16 4 C 0.70 22.25 7.68 179.05 1.37 23.63 16 5 O -0.60 -25.09 10.68 -3.99 -0.04 -25.13 16 6 N -0.67 -21.48 5.34 -317.32 -1.70 -23.17 16 7 C 0.18 7.77 6.26 38.10 0.24 8.01 16 8 C -0.25 -10.36 9.97 22.58 0.23 -10.13 16 9 C -0.09 -4.13 10.02 22.20 0.22 -3.91 16 10 C -0.20 -10.81 8.69 22.75 0.20 -10.62 16 11 C 0.09 5.11 5.57 -21.31 -0.12 4.99 16 12 C -0.50 -28.74 9.05 23.46 0.21 -28.53 16 13 H 0.07 3.73 7.90 -2.91 -0.02 3.70 16 14 C 0.04 1.88 5.16 85.25 0.44 2.32 16 15 N -0.83 -44.74 10.94 21.82 0.24 -44.50 16 16 Si 0.98 39.95 29.59 68.60 2.03 41.98 16 17 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 18 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 19 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 20 C -0.23 -12.21 8.39 22.85 0.19 -12.02 16 21 C -0.14 -2.79 4.37 31.25 0.14 -2.66 16 22 C -0.56 -7.05 7.46 72.65 0.54 -6.51 16 23 S 2.40 33.45 6.05 -56.49 -0.34 33.11 16 24 O -0.97 -19.03 18.16 -127.52 -2.32 -21.35 16 25 O -0.97 -21.40 18.16 -127.52 -2.32 -23.71 16 26 C -0.58 -4.96 6.69 72.19 0.48 -4.48 16 27 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.52 5.98 -2.39 -0.01 1.51 16 30 H 0.41 5.00 8.00 -92.72 -0.74 4.26 16 31 H 0.42 9.27 8.84 -92.71 -0.82 8.45 16 32 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 33 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 34 H 0.10 5.66 6.17 -2.91 -0.02 5.65 16 35 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 36 H 0.09 4.89 6.46 -2.91 -0.02 4.87 16 37 H 0.08 1.77 8.04 -2.39 -0.02 1.75 16 38 H 0.09 2.42 7.01 -2.39 -0.02 2.40 16 39 H 0.16 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.15 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.18 0.57 7.63 -2.39 -0.02 0.56 16 42 H 0.17 0.66 7.37 -2.38 -0.02 0.64 16 Total: -1.00 -83.76 353.72 -2.40 -86.16 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: -0.48 Total: 32.25 kcal Atomic # 6 Polarization: -43.71 SS G_CDS: 4.71 Total: -38.99 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -3.65 Total: -84.30 kcal Atomic # 8 Polarization: -65.52 SS G_CDS: -4.67 Total: -70.19 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Atomic # 16 Polarization: 33.45 SS G_CDS: -0.34 Total: 33.11 kcal Total: -83.76 -2.40 -86.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413568445.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.475 kcal (2) G-P(sol) polarization free energy of solvation -83.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds