Wall clock time and date at job start Tue Mar 31 2020 20:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 119.99750 * 2 1 4 4 C 1.50701 * 109.47260 * 85.00452 * 3 2 1 5 5 H 1.08002 * 119.99761 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99694 * 180.27562 * 4 3 2 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 3 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 3 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 S 1.65597 * 119.99916 * 179.97438 * 2 1 3 13 13 O 1.42105 * 106.40199 * 23.53870 * 12 2 1 14 14 O 1.42094 * 106.40323 * 156.45898 * 12 2 1 15 15 N 1.65596 * 107.21867 * 270.00100 * 12 2 1 16 16 C 1.49080 * 121.03923 * 89.99721 * 15 12 2 17 17 C 1.44463 * 111.35794 * 95.97244 * 16 15 12 18 18 S 1.82670 * 111.62260 * 60.15868 * 17 16 15 19 19 O 1.42099 * 109.46496 * 40.05621 * 18 17 16 20 20 C 1.79020 * 101.71042 * 284.31714 * 18 17 16 21 21 C 1.53001 * 108.78711 * 209.73307 * 20 18 17 22 22 C 1.52991 * 108.79178 * 327.95213 * 20 18 17 23 23 C 1.54968 * 112.92947 * 88.84734 * 20 18 17 24 24 C 1.43335 * 121.03606 * 269.72072 * 15 12 2 25 25 H 1.09001 * 109.47593 * 89.99972 * 1 2 3 26 26 H 1.09004 * 109.47355 * 210.00460 * 1 2 3 27 27 H 1.09010 * 109.47017 * 329.99967 * 1 2 3 28 28 H 1.09000 * 109.47197 * 324.99458 * 3 2 1 29 29 H 1.09007 * 109.46342 * 205.00030 * 3 2 1 30 30 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.10700 * 216.45299 * 16 15 12 32 32 H 1.09002 * 109.10090 * 335.55312 * 16 15 12 33 33 H 1.09006 * 109.04986 * 180.70917 * 17 16 15 34 34 H 1.09001 * 109.05065 * 299.67232 * 17 16 15 35 35 H 1.09002 * 109.47133 * 60.00188 * 21 20 18 36 36 H 1.09007 * 109.47214 * 179.97438 * 21 20 18 37 37 H 1.08994 * 109.47416 * 300.00093 * 21 20 18 38 38 H 1.09001 * 109.47094 * 60.00449 * 22 20 18 39 39 H 1.09004 * 109.47370 * 180.02562 * 22 20 18 40 40 H 1.08998 * 109.47788 * 300.00431 * 22 20 18 41 41 H 1.08994 * 108.87637 * 79.53948 * 23 20 18 42 42 H 1.09003 * 108.87576 * 198.08276 * 23 20 18 43 43 H 1.09005 * 108.73592 * 42.90270 * 24 15 12 44 44 H 1.08996 * 108.74186 * 160.98685 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3415 1.7657 1.4154 5 1 1.9283 1.1938 2.2331 6 6 2.9952 2.9534 1.6658 7 7 3.4981 3.6500 0.6700 8 14 3.1669 3.5733 3.4196 9 1 4.4226 3.0449 4.0107 10 1 3.2071 5.0578 3.4182 11 1 2.0079 3.1101 4.2240 12 16 2.2930 -1.4341 0.0006 13 8 1.4112 -2.4068 -0.5434 14 8 3.5759 -1.1571 -0.5439 15 7 2.5380 -1.8580 1.5826 16 6 1.5456 -2.6933 2.3172 17 6 1.9146 -4.0898 2.2954 18 16 3.5417 -4.3684 3.0774 19 8 3.6579 -3.5501 4.2333 20 6 4.6597 -3.7749 1.8115 21 6 5.9738 -4.5521 1.9108 22 6 4.0363 -4.0402 0.4397 23 6 4.9646 -2.2607 1.9369 24 6 3.7139 -1.4380 2.2865 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8901 0.5139 28 1 1.6501 2.0043 -0.5895 29 1 3.1858 1.1176 -0.4344 30 1 3.9577 4.4858 0.8462 31 1 1.4908 -2.3550 3.3519 32 1 0.5669 -2.5766 1.8516 33 1 1.1594 -4.6658 2.8305 34 1 1.9550 -4.4311 1.2610 35 1 5.7796 -5.6146 1.7636 36 1 6.6634 -4.1996 1.1437 37 1 6.4146 -4.3964 2.8954 38 1 3.0834 -3.5162 0.3662 39 1 4.7089 -3.6831 -0.3403 40 1 3.8727 -5.1107 0.3157 41 1 5.7131 -2.1150 2.7157 42 1 5.3677 -1.9025 0.9896 43 1 3.9111 -0.3931 2.0466 44 1 3.5289 -1.5199 3.3575 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475299556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:00 Heat of formation + Delta-G solvation = -93.474090 kcal Electronic energy + Delta-G solvation = -28682.075651 eV Core-core repulsion = 24888.902163 eV Total energy + Delta-G solvation = -3793.173488 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.37865 -36.80124 -35.70088 -35.52477 -35.28605 -34.95525 -32.52343 -31.91476 -28.25585 -27.83585 -27.40666 -25.11554 -23.36651 -22.43970 -22.09706 -21.10552 -18.28020 -17.38639 -17.17012 -16.97741 -16.56475 -16.40090 -15.45417 -15.11321 -14.95983 -14.43920 -14.42651 -14.02900 -13.59904 -13.48229 -13.30728 -13.09252 -12.87443 -12.52451 -12.40347 -12.32429 -12.19736 -12.02384 -11.91897 -11.66842 -11.59096 -11.45002 -11.19927 -11.15725 -11.11848 -10.93499 -10.80625 -10.67691 -10.55771 -10.30444 -10.10717 -9.80637 -9.65315 -8.80573 -8.52883 -8.13374 -8.08065 -6.14589 -4.21587 1.19676 1.71760 2.55827 3.24146 3.31173 3.32535 3.39779 3.82950 4.02190 4.34321 4.63261 4.73475 4.80274 4.94963 5.04830 5.16865 5.19293 5.25713 5.41809 5.50196 5.53025 5.59684 5.66663 5.74809 5.80852 5.82371 5.97074 6.02012 6.05229 6.06422 6.16757 6.20948 6.27012 6.48274 6.53359 6.65345 6.93235 7.29068 7.39106 7.58794 7.82296 8.11039 8.83794 9.44981 10.93244 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.005701 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.145138 B = 4910.029993 C = 5678.359331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.999 5.999 3 C 0.244 3.756 4 C -0.541 4.541 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.274 1.274 12 S 2.789 3.211 13 O -0.999 6.999 14 O -0.970 6.970 15 N -1.002 6.002 16 C 0.137 3.863 17 C -0.469 4.469 18 S 1.253 4.747 19 O -0.842 6.842 20 C -0.382 4.382 21 C -0.119 4.119 22 C -0.139 4.139 23 C -0.117 4.117 24 C 0.097 3.903 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.265 0.735 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.983 -19.322 2.449 19.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.841 5.841 3 C 0.122 3.878 4 C -0.581 4.581 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.720 3.280 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.198 1.198 12 S 2.798 3.202 13 O -0.983 6.983 14 O -0.954 6.954 15 N -0.839 5.839 16 C 0.011 3.989 17 C -0.606 4.606 18 S 1.450 4.550 19 O -0.837 6.837 20 C -0.481 4.481 21 C -0.178 4.178 22 C -0.197 4.197 23 C -0.157 4.157 24 C -0.030 4.030 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.114 0.886 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.409 -19.953 2.542 20.118 hybrid contribution -0.403 2.980 0.737 3.096 sum -0.812 -16.973 3.279 17.305 Atomic orbital electron populations 1.21238 0.80193 1.02068 1.00625 1.57672 1.14246 1.23682 1.88490 1.19236 0.92142 0.78873 0.97597 1.21547 1.36846 1.06775 0.92898 0.91923 1.24948 0.95119 0.96450 0.97256 1.69932 1.36735 1.15070 1.30926 0.86589 0.78750 0.78035 0.84649 1.20368 1.21038 1.19835 1.01883 0.73127 0.72382 0.72813 1.93527 1.67527 1.60259 1.76981 1.93576 1.40363 1.85245 1.76202 1.58114 1.28446 1.64865 1.32435 1.19678 0.91915 0.88683 0.98619 1.26852 1.18641 1.02648 1.12463 1.69861 0.86518 1.17002 0.81587 1.93095 1.82555 1.71878 1.36158 1.27230 1.07927 1.02763 1.10177 1.21548 0.94424 0.99206 1.02583 1.22137 1.00557 1.01936 0.95042 1.22481 0.98706 0.90601 1.03952 1.21047 0.83335 0.99993 0.98613 0.93676 0.93073 0.90727 0.94419 0.93128 0.92530 0.90226 0.90292 0.85938 0.85551 0.91368 0.91323 0.92320 0.93404 0.90803 0.91059 0.90816 0.89809 0.88555 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.90 10.31 59.85 0.62 2.51 16 2 N -1.00 -21.58 3.23 -123.04 -0.40 -21.97 16 3 C 0.24 6.23 5.41 -5.19 -0.03 6.20 16 4 C -0.54 -14.52 8.70 -34.44 -0.30 -14.81 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 7 N -0.89 -25.72 13.29 55.43 0.74 -24.99 16 8 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 S 2.79 56.72 4.35 -107.50 -0.47 56.25 16 13 O -1.00 -19.93 15.29 -57.17 -0.87 -20.81 16 14 O -0.97 -22.19 14.40 -57.17 -0.82 -23.01 16 15 N -1.00 -17.80 1.84 -118.63 -0.22 -18.02 16 16 C 0.14 1.99 5.10 -6.59 -0.03 1.96 16 17 C -0.47 -5.14 5.45 33.18 0.18 -4.96 16 18 S 1.25 13.37 12.57 -107.50 -1.35 12.01 16 19 O -0.84 -13.56 15.30 -35.23 -0.54 -14.10 16 20 C -0.38 -4.69 0.81 -89.58 -0.07 -4.77 16 21 C -0.12 -1.09 8.23 37.16 0.31 -0.78 16 22 C -0.14 -1.76 6.27 37.15 0.23 -1.53 16 23 C -0.12 -1.90 4.58 -25.31 -0.12 -2.02 16 24 C 0.10 1.81 4.83 -5.33 -0.03 1.79 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.80 7.58 -51.93 -0.39 0.40 16 27 H 0.07 1.33 8.07 -51.92 -0.42 0.91 16 28 H 0.04 1.00 8.11 -51.93 -0.42 0.58 16 29 H 0.05 1.41 6.92 -51.93 -0.36 1.05 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.08 1.18 7.58 -51.93 -0.39 0.79 16 32 H 0.08 1.09 7.50 -51.93 -0.39 0.70 16 33 H 0.12 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.13 1.35 5.68 -51.93 -0.30 1.06 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.71 1.43 -41.42 -0.06 0.65 16 39 H 0.07 1.03 8.05 -51.93 -0.42 0.61 16 40 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 41 H 0.07 1.14 7.98 -51.93 -0.41 0.73 16 42 H 0.08 1.49 7.03 -51.93 -0.37 1.12 16 43 H 0.10 2.08 7.43 -51.93 -0.39 1.70 16 44 H 0.09 1.72 5.89 -51.93 -0.31 1.42 16 LS Contribution 350.46 15.07 5.28 5.28 Total: -1.00 -35.43 350.46 -9.71 -45.14 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.70 Total: 2.57 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 0.66 Total: -14.70 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: 0.12 Total: -64.98 kcal Atomic # 8 Polarization: -55.68 SS G_CDS: -2.24 Total: -57.92 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 70.09 SS G_CDS: -1.82 Total: 68.27 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.43 -9.71 -45.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475299556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.334 kcal (2) G-P(sol) polarization free energy of solvation -35.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds