Wall clock time and date at job start Tue Mar 31 2020 20:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 119.99750 * 2 1 4 4 C 1.50701 * 109.47260 * 85.00452 * 3 2 1 5 5 H 1.08002 * 119.99761 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99694 * 180.27562 * 4 3 2 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 3 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 3 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 S 1.65597 * 119.99916 * 179.97438 * 2 1 3 13 13 O 1.42105 * 106.40199 * 23.53870 * 12 2 1 14 14 O 1.42094 * 106.40323 * 156.45898 * 12 2 1 15 15 N 1.65596 * 107.21867 * 270.00100 * 12 2 1 16 16 C 1.49080 * 121.03923 * 89.99721 * 15 12 2 17 17 C 1.44463 * 111.35794 * 95.97244 * 16 15 12 18 18 S 1.82670 * 111.62260 * 60.15868 * 17 16 15 19 19 O 1.42099 * 109.46496 * 40.05621 * 18 17 16 20 20 C 1.79020 * 101.71042 * 284.31714 * 18 17 16 21 21 C 1.53001 * 108.78711 * 209.73307 * 20 18 17 22 22 C 1.52991 * 108.79178 * 327.95213 * 20 18 17 23 23 C 1.54968 * 112.92947 * 88.84734 * 20 18 17 24 24 C 1.43335 * 121.03606 * 269.72072 * 15 12 2 25 25 H 1.09001 * 109.47593 * 89.99972 * 1 2 3 26 26 H 1.09004 * 109.47355 * 210.00460 * 1 2 3 27 27 H 1.09010 * 109.47017 * 329.99967 * 1 2 3 28 28 H 1.09000 * 109.47197 * 324.99458 * 3 2 1 29 29 H 1.09007 * 109.46342 * 205.00030 * 3 2 1 30 30 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.10700 * 216.45299 * 16 15 12 32 32 H 1.09002 * 109.10090 * 335.55312 * 16 15 12 33 33 H 1.09006 * 109.04986 * 180.70917 * 17 16 15 34 34 H 1.09001 * 109.05065 * 299.67232 * 17 16 15 35 35 H 1.09002 * 109.47133 * 60.00188 * 21 20 18 36 36 H 1.09007 * 109.47214 * 179.97438 * 21 20 18 37 37 H 1.08994 * 109.47416 * 300.00093 * 21 20 18 38 38 H 1.09001 * 109.47094 * 60.00449 * 22 20 18 39 39 H 1.09004 * 109.47370 * 180.02562 * 22 20 18 40 40 H 1.08998 * 109.47788 * 300.00431 * 22 20 18 41 41 H 1.08994 * 108.87637 * 79.53948 * 23 20 18 42 42 H 1.09003 * 108.87576 * 198.08276 * 23 20 18 43 43 H 1.09005 * 108.73592 * 42.90270 * 24 15 12 44 44 H 1.08996 * 108.74186 * 160.98685 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3415 1.7657 1.4154 5 1 1.9283 1.1938 2.2331 6 6 2.9952 2.9534 1.6658 7 7 3.4981 3.6500 0.6700 8 14 3.1669 3.5733 3.4196 9 1 4.4226 3.0449 4.0107 10 1 3.2071 5.0578 3.4182 11 1 2.0079 3.1101 4.2240 12 16 2.2930 -1.4341 0.0006 13 8 1.4112 -2.4068 -0.5434 14 8 3.5759 -1.1571 -0.5439 15 7 2.5380 -1.8580 1.5826 16 6 1.5456 -2.6933 2.3172 17 6 1.9146 -4.0898 2.2954 18 16 3.5417 -4.3684 3.0774 19 8 3.6579 -3.5501 4.2333 20 6 4.6597 -3.7749 1.8115 21 6 5.9738 -4.5521 1.9108 22 6 4.0363 -4.0402 0.4397 23 6 4.9646 -2.2607 1.9369 24 6 3.7139 -1.4380 2.2865 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8901 0.5139 28 1 1.6501 2.0043 -0.5895 29 1 3.1858 1.1176 -0.4344 30 1 3.9577 4.4858 0.8462 31 1 1.4908 -2.3550 3.3519 32 1 0.5669 -2.5766 1.8516 33 1 1.1594 -4.6658 2.8305 34 1 1.9550 -4.4311 1.2610 35 1 5.7796 -5.6146 1.7636 36 1 6.6634 -4.1996 1.1437 37 1 6.4146 -4.3964 2.8954 38 1 3.0834 -3.5162 0.3662 39 1 4.7089 -3.6831 -0.3403 40 1 3.8727 -5.1107 0.3157 41 1 5.7131 -2.1150 2.7157 42 1 5.3677 -1.9025 0.9896 43 1 3.9111 -0.3931 2.0466 44 1 3.5289 -1.5199 3.3575 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475299556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:59 Heat of formation + Delta-G solvation = -120.456083 kcal Electronic energy + Delta-G solvation = -28683.245678 eV Core-core repulsion = 24888.902163 eV Total energy + Delta-G solvation = -3794.343515 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.62035 -38.45446 -37.33989 -37.01596 -36.71534 -36.06295 -34.59455 -33.08933 -29.78758 -29.46865 -28.30299 -26.88005 -24.54801 -24.31060 -23.42902 -22.15933 -19.86888 -18.98152 -18.61344 -18.43124 -18.00438 -17.83500 -17.03310 -16.60245 -16.24608 -15.99611 -15.56907 -15.33399 -15.04396 -14.97430 -14.65187 -14.35461 -14.15550 -14.06688 -13.82278 -13.66419 -13.51311 -13.49104 -13.15038 -13.10488 -13.07562 -12.99597 -12.78448 -12.60541 -12.54943 -12.48998 -12.22052 -12.11238 -11.94229 -11.87932 -11.71907 -11.62511 -10.69262 -10.68687 -10.19033 -9.87038 -9.14640 -8.27870 -6.41752 -0.41506 0.84686 1.32362 1.34157 1.43467 1.65150 1.85305 2.31671 2.43051 2.87147 3.03192 3.24902 3.56346 3.65604 3.75828 3.94592 3.97702 4.17264 4.23118 4.33541 4.35545 4.56620 4.62036 4.64698 4.69910 4.73535 4.79507 4.80548 4.86206 4.94355 4.98343 5.07574 5.13741 5.16424 5.24510 5.26456 5.36336 5.37905 5.50127 5.65153 5.84635 5.98367 6.69585 7.28363 8.80349 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.005701 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.145138 B = 4910.029993 C = 5678.359331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -1.011 6.011 3 C 0.259 3.741 4 C -0.543 4.543 5 H 0.064 0.936 6 C 0.015 3.985 7 N -0.925 5.925 8 Si 0.954 3.046 9 H -0.277 1.277 10 H -0.277 1.277 11 H -0.264 1.264 12 S 2.801 3.199 13 O -0.991 6.991 14 O -1.003 7.003 15 N -0.998 5.998 16 C 0.125 3.875 17 C -0.478 4.478 18 S 1.327 4.673 19 O -0.894 6.894 20 C -0.389 4.389 21 C -0.120 4.120 22 C -0.145 4.145 23 C -0.119 4.119 24 C 0.104 3.896 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.022 0.978 29 H 0.018 0.982 30 H 0.268 0.732 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.166 0.834 34 H 0.138 0.862 35 H 0.112 0.888 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.024 0.976 39 H 0.053 0.947 40 H 0.121 0.879 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.083 -22.275 3.813 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.852 5.852 3 C 0.135 3.865 4 C -0.582 4.582 5 H 0.083 0.917 6 C -0.185 4.185 7 N -0.564 5.564 8 Si 0.779 3.221 9 H -0.203 1.203 10 H -0.202 1.202 11 H -0.189 1.189 12 S 2.810 3.190 13 O -0.976 6.976 14 O -0.987 6.987 15 N -0.837 5.837 16 C 0.001 3.999 17 C -0.615 4.615 18 S 1.525 4.475 19 O -0.890 6.890 20 C -0.486 4.486 21 C -0.179 4.179 22 C -0.203 4.203 23 C -0.159 4.159 24 C -0.024 4.024 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.184 0.816 34 H 0.156 0.844 35 H 0.131 0.869 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.140 0.860 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.533 -22.920 3.900 23.300 hybrid contribution -0.121 3.849 0.264 3.860 sum -1.654 -19.072 4.163 19.591 Atomic orbital electron populations 1.21504 0.78075 1.03360 1.02104 1.57680 1.15849 1.22570 1.89083 1.18754 0.90808 0.80261 0.96646 1.21751 1.36352 1.06692 0.93370 0.91741 1.25759 0.94866 0.96791 1.01099 1.70044 1.37713 1.15621 1.33012 0.85613 0.78789 0.77720 0.79965 1.20329 1.20239 1.18872 1.01434 0.72352 0.71997 0.73248 1.93522 1.67198 1.59551 1.77281 1.93534 1.42069 1.85637 1.77467 1.57922 1.28852 1.65245 1.31690 1.20015 0.91600 0.90247 0.98006 1.26946 1.19854 1.00716 1.13980 1.69200 0.85014 1.14373 0.78927 1.92991 1.83532 1.73048 1.39438 1.27401 1.10439 0.99829 1.10968 1.21634 0.92401 1.01330 1.02502 1.22241 0.98739 1.04826 0.94480 1.22441 0.97261 0.93786 1.02460 1.20895 0.84804 0.98414 0.98244 0.92162 0.90356 0.90882 0.96042 0.96441 0.92340 0.90600 0.89211 0.81602 0.84444 0.86922 0.92158 0.92119 0.95706 0.92772 0.86038 0.90749 0.92352 0.92742 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.33 10.31 127.77 1.32 4.65 16 2 N -1.01 -44.37 3.23 -543.19 -1.75 -46.12 16 3 C 0.26 13.82 5.41 85.63 0.46 14.29 16 4 C -0.54 -29.92 8.70 25.60 0.22 -29.70 16 5 H 0.06 3.46 7.81 -2.91 -0.02 3.43 16 6 C 0.01 0.84 5.46 84.65 0.46 1.30 16 7 N -0.92 -55.18 13.29 21.45 0.28 -54.90 16 8 Si 0.95 44.43 29.54 68.60 2.03 46.45 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 12 S 2.80 114.73 4.35 -56.49 -0.25 114.48 16 13 O -0.99 -38.11 15.29 -128.00 -1.96 -40.07 16 14 O -1.00 -47.98 14.40 -128.00 -1.84 -49.82 16 15 N -1.00 -35.22 1.84 -529.24 -0.98 -36.20 16 16 C 0.13 3.37 5.10 83.30 0.42 3.80 16 17 C -0.48 -8.66 5.45 69.41 0.38 -8.28 16 18 S 1.33 24.29 12.57 -56.49 -0.71 23.58 16 19 O -0.89 -27.22 15.30 -148.98 -2.28 -29.49 16 20 C -0.39 -8.86 0.81 -10.12 -0.01 -8.87 16 21 C -0.12 -1.88 8.23 71.98 0.59 -1.29 16 22 C -0.14 -3.37 6.27 71.98 0.45 -2.92 16 23 C -0.12 -3.97 4.58 31.52 0.14 -3.83 16 24 C 0.10 4.00 4.83 87.21 0.42 4.42 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.08 2.29 7.58 -2.39 -0.02 2.27 16 27 H 0.07 2.56 8.07 -2.38 -0.02 2.54 16 28 H 0.02 1.19 8.11 -2.39 -0.02 1.17 16 29 H 0.02 1.04 6.92 -2.38 -0.02 1.03 16 30 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 31 H 0.08 2.11 7.58 -2.39 -0.02 2.09 16 32 H 0.09 2.21 7.50 -2.39 -0.02 2.19 16 33 H 0.17 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.14 2.34 5.68 -2.39 -0.01 2.32 16 35 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.02 0.69 1.43 -9.07 -0.01 0.67 16 39 H 0.05 1.47 8.05 -2.38 -0.02 1.45 16 40 H 0.12 1.53 8.13 -2.39 -0.02 1.51 16 41 H 0.07 2.38 7.98 -2.39 -0.02 2.36 16 42 H 0.06 2.21 7.03 -2.39 -0.02 2.19 16 43 H 0.05 2.51 7.43 -2.38 -0.02 2.49 16 44 H 0.09 3.42 5.89 -2.39 -0.01 3.40 16 Total: -1.00 -80.33 350.46 -1.59 -81.92 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.99 Total: 16.60 kcal Atomic # 6 Polarization: -31.30 SS G_CDS: 4.87 Total: -26.43 kcal Atomic # 7 Polarization: -134.77 SS G_CDS: -2.44 Total: -137.21 kcal Atomic # 8 Polarization: -113.30 SS G_CDS: -6.08 Total: -119.38 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 139.01 SS G_CDS: -0.96 Total: 138.06 kcal Total: -80.33 -1.59 -81.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475299556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.538 kcal (2) G-P(sol) polarization free energy of solvation -80.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds