Wall clock time and date at job start Tue Mar 31 2020 20:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40359 * 126.64267 * 2 1 4 4 C 1.35129 * 107.11354 * 180.02562 * 3 2 1 5 5 O 1.33931 * 108.76958 * 359.77287 * 4 3 2 6 6 C 1.34911 * 109.38275 * 0.37357 * 5 4 3 7 7 C 1.46651 * 125.99106 * 179.88881 * 6 5 4 8 8 O 1.21695 * 120.00696 * 179.69451 * 7 6 5 9 9 N 1.34779 * 119.99895 * 359.68942 * 7 6 5 10 10 C 1.47429 * 125.64850 * 0.04708 * 9 7 6 11 11 C 1.55117 * 104.94206 * 203.96367 * 10 9 7 12 12 C 1.55153 * 101.48761 * 323.22093 * 11 10 9 13 13 H 1.09002 * 110.71693 * 276.83086 * 12 11 10 14 14 N 1.46497 * 110.72124 * 153.73469 * 12 11 10 15 15 C 1.34773 * 120.00328 * 157.43846 * 14 12 11 16 16 O 1.21287 * 119.99548 * 0.02562 * 15 14 12 17 17 C 1.50695 * 120.00396 * 179.97438 * 15 14 12 18 18 S 1.81000 * 109.47338 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00265 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99604 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00161 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00140 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00142 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 59.99698 * 23 21 19 25 25 H 1.48503 * 109.47261 * 299.99879 * 23 21 19 26 26 H 1.48500 * 109.47454 * 179.97438 * 23 21 19 27 27 C 1.47018 * 125.65126 * 179.97438 * 9 7 6 28 28 H 1.08997 * 109.46847 * 269.95227 * 1 2 3 29 29 H 1.08992 * 109.47257 * 29.95899 * 1 2 3 30 30 H 1.09004 * 109.46612 * 149.96222 * 1 2 3 31 31 H 1.07997 * 126.44429 * 0.03568 * 3 2 1 32 32 H 1.08006 * 125.61681 * 179.97438 * 4 3 2 33 33 H 1.09004 * 110.35967 * 322.92831 * 10 9 7 34 34 H 1.09001 * 110.36529 * 85.13555 * 10 9 7 35 35 H 1.08998 * 111.16073 * 205.12872 * 11 10 9 36 36 H 1.09005 * 110.93697 * 81.21760 * 11 10 9 37 37 H 0.97008 * 119.99878 * 337.44336 * 14 12 11 38 38 H 1.09004 * 109.47077 * 60.00506 * 17 15 14 39 39 H 1.08997 * 109.47267 * 300.00260 * 17 15 14 40 40 H 0.97001 * 119.99591 * 359.97438 * 22 21 19 41 41 H 1.09004 * 109.87922 * 59.56226 * 27 9 7 42 42 H 1.09000 * 110.01091 * 298.47540 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 -0.0006 5 8 3.6006 -0.6647 0.0041 6 6 2.3221 -1.0956 -0.0006 7 6 1.8844 -2.4952 0.0000 8 8 0.6969 -2.7615 0.0011 9 7 2.7973 -3.4868 -0.0008 10 6 4.2606 -3.3075 -0.0012 11 6 4.8239 -4.6179 -0.6107 12 6 3.8484 -5.6742 -0.0278 13 1 4.1497 -5.9632 0.9791 14 7 3.7729 -6.8479 -0.9012 15 6 3.3731 -8.0344 -0.4026 16 8 3.0753 -8.1303 0.7693 17 6 3.2949 -9.2416 -1.3011 18 16 2.7308 -10.6707 -0.3441 19 6 2.7319 -11.9025 -1.6040 20 1 3.0279 -11.6453 -2.6103 21 6 2.3513 -13.2029 -1.3034 22 7 1.9891 -13.5160 -0.0772 23 14 2.3532 -14.5090 -2.6389 24 1 3.7256 -14.6545 -3.1872 25 1 1.4258 -14.1062 -3.7266 26 1 1.9102 -15.8049 -2.0647 27 6 2.4988 -4.9263 0.0002 28 1 -0.3633 -0.0009 1.0277 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3633 -0.8897 -0.5145 31 1 2.0306 2.1595 0.0005 32 1 4.5046 1.2917 -0.0011 33 1 4.5376 -2.4517 -0.6170 34 1 4.6269 -3.1758 1.0169 35 1 5.8445 -4.8012 -0.2747 36 1 4.7708 -4.5956 -1.6992 37 1 4.0108 -6.7711 -1.8385 38 1 4.2808 -9.4496 -1.7169 39 1 2.5926 -9.0465 -2.1115 40 1 1.9885 -12.8379 0.6163 41 1 1.9139 -5.1842 -0.8828 42 1 1.9460 -5.1920 0.9013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493814250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:38 Heat of formation + Delta-G solvation = -55.803075 kcal Electronic energy + Delta-G solvation = -25865.859195 eV Core-core repulsion = 21938.875294 eV Total energy + Delta-G solvation = -3926.983901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.13340 -40.40943 -39.22895 -37.63752 -34.67127 -34.14629 -32.54218 -31.54758 -30.73169 -29.71273 -28.57567 -27.50266 -24.89458 -24.41288 -22.59232 -21.93054 -21.19004 -20.48175 -19.74511 -18.41726 -18.03692 -17.24293 -16.74515 -16.69182 -16.32943 -15.92050 -15.48290 -15.05982 -14.55163 -14.41881 -13.96898 -13.84342 -13.74132 -13.44890 -13.41220 -13.36095 -13.25759 -12.90281 -12.74928 -12.46730 -12.36790 -12.23431 -12.15690 -11.81924 -11.77146 -11.21150 -10.92724 -10.45819 -10.18145 -10.12798 -9.64000 -9.58418 -9.24818 -9.16828 -9.01997 -8.85564 -8.24813 -6.69307 -6.63450 -4.01798 0.66455 1.91627 2.18408 2.58620 2.81849 2.87100 2.92637 3.33956 3.37264 3.50217 3.57736 3.98635 4.07709 4.23833 4.32829 4.35729 4.49852 4.64515 4.82361 4.92916 5.02778 5.06487 5.09138 5.16178 5.21160 5.35055 5.38028 5.39928 5.41328 5.49031 5.62968 5.67628 5.71901 5.75343 5.77197 5.86655 5.97393 6.04967 6.40606 6.46123 7.03744 7.48715 7.69463 7.90105 8.39853 8.48659 9.25518 10.80398 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.030103 B = 0.001889 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.919789 B =14821.307116 C =15238.825754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.085 4.085 3 C -0.224 4.224 4 C -0.008 4.008 5 O -0.161 6.161 6 C -0.081 4.081 7 C 0.616 3.384 8 O -0.514 6.514 9 N -0.610 5.610 10 C 0.101 3.899 11 C -0.139 4.139 12 C 0.139 3.861 13 H 0.108 0.892 14 N -0.729 5.729 15 C 0.533 3.467 16 O -0.513 6.513 17 C -0.131 4.131 18 S -0.115 6.115 19 C -0.608 4.608 20 H 0.066 0.934 21 C 0.035 3.965 22 N -0.883 5.883 23 Si 1.084 2.916 24 H -0.285 1.285 25 H -0.285 1.285 26 H -0.278 1.278 27 C 0.096 3.904 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.156 0.844 32 H 0.210 0.790 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.402 0.598 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.278 0.722 41 H 0.078 0.922 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.163 31.541 -2.926 32.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.088 4.088 3 C -0.243 4.243 4 C -0.077 4.077 5 O -0.057 6.057 6 C -0.133 4.133 7 C 0.405 3.595 8 O -0.391 6.391 9 N -0.343 5.343 10 C -0.022 4.022 11 C -0.177 4.177 12 C 0.032 3.968 13 H 0.126 0.874 14 N -0.383 5.383 15 C 0.319 3.681 16 O -0.386 6.386 17 C -0.283 4.283 18 S 0.112 5.888 19 C -0.756 4.756 20 H 0.084 0.916 21 C -0.175 4.175 22 N -0.517 5.517 23 Si 0.910 3.090 24 H -0.211 1.211 25 H -0.211 1.211 26 H -0.203 1.203 27 C -0.028 4.028 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.174 0.826 32 H 0.227 0.773 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.237 0.763 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.891 29.441 -1.219 30.050 hybrid contribution 0.895 2.125 -1.716 2.874 sum 6.786 31.567 -2.935 32.421 Atomic orbital electron populations 1.20452 0.88113 1.03703 1.03070 1.20672 0.97762 0.90941 0.99444 1.21757 0.92444 1.00175 1.09928 1.24406 0.99987 0.80863 1.02476 1.84155 1.28230 1.22457 1.70850 1.21725 0.81550 0.94388 1.15620 1.16151 0.84810 0.81252 0.77334 1.90888 1.15211 1.82029 1.50984 1.48250 1.07014 1.06421 1.72663 1.22478 0.79231 0.98549 1.01938 1.23138 0.99780 0.93195 1.01603 1.21852 0.93375 0.85009 0.96578 0.87358 1.45935 1.70856 1.08283 1.13223 1.20373 0.75581 0.83482 0.88681 1.90721 1.46430 1.84492 1.16971 1.23317 1.05417 0.97230 1.02291 1.84842 1.87323 1.00215 1.16458 1.23696 1.57172 0.97612 0.97141 0.91589 1.26062 0.92779 0.97804 1.00903 1.70806 1.41582 1.37618 1.01704 0.83328 0.76667 0.75288 0.73711 1.21141 1.21124 1.20266 1.22495 0.98194 0.78244 1.03846 0.90650 0.91374 0.89428 0.82645 0.77326 0.89264 0.90506 0.88549 0.89723 0.76344 0.88813 0.88816 0.90989 0.90398 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 9.81 36.01 0.35 -0.51 16 2 C -0.09 -0.82 6.20 -104.43 -0.65 -1.46 16 3 C -0.22 -1.51 10.83 -39.89 -0.43 -1.94 16 4 C -0.01 -0.04 12.08 29.63 0.36 0.32 16 5 O -0.16 -1.32 7.86 5.00 0.04 -1.28 16 6 C -0.08 -0.86 6.93 -36.80 -0.25 -1.12 16 7 C 0.62 7.83 7.82 -12.86 -0.10 7.73 16 8 O -0.51 -8.04 15.07 5.19 0.08 -7.96 16 9 N -0.61 -6.69 3.33 -171.93 -0.57 -7.26 16 10 C 0.10 0.76 6.17 -2.41 -0.01 0.75 16 11 C -0.14 -0.94 6.73 -24.47 -0.16 -1.10 16 12 C 0.14 1.47 3.26 -66.10 -0.22 1.25 16 13 H 0.11 1.30 7.62 -51.93 -0.40 0.90 16 14 N -0.73 -8.76 5.12 -52.04 -0.27 -9.02 16 15 C 0.53 9.36 7.85 -10.99 -0.09 9.27 16 16 O -0.51 -11.07 15.55 5.55 0.09 -10.98 16 17 C -0.13 -2.57 6.16 36.00 0.22 -2.35 16 18 S -0.11 -3.05 19.60 -107.50 -2.11 -5.16 16 19 C -0.61 -17.43 9.50 30.94 0.29 -17.13 16 20 H 0.07 1.80 7.80 -52.48 -0.41 1.39 16 21 C 0.04 1.02 5.49 -17.43 -0.10 0.92 16 22 N -0.88 -27.46 13.67 55.49 0.76 -26.70 16 23 Si 1.08 24.86 29.92 -169.99 -5.09 19.77 16 24 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 C 0.10 1.16 6.63 -3.07 -0.02 1.14 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.95 6.45 -51.93 -0.33 0.61 16 31 H 0.16 0.67 8.06 -52.49 -0.42 0.25 16 32 H 0.21 0.26 8.06 -52.48 -0.42 -0.16 16 33 H 0.09 0.59 6.23 -51.93 -0.32 0.27 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.50 8.00 -51.93 -0.42 0.08 16 37 H 0.40 3.63 8.54 -40.82 -0.35 3.28 16 38 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 39 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 40 H 0.28 8.82 7.12 -40.82 -0.29 8.53 16 41 H 0.08 1.02 8.03 -51.93 -0.42 0.60 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -37.46 369.77 -7.84 -45.30 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.54 Total: 1.96 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -0.81 Total: -4.23 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: -0.08 Total: -42.99 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.20 Total: -20.22 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.09 Total: 19.77 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.11 Total: -5.16 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.46 -7.84 -45.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493814250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.506 kcal (2) G-P(sol) polarization free energy of solvation -37.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds