Wall clock time and date at job start Tue Mar 31 2020 20:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40362 * 126.64844 * 2 1 4 4 C 1.35130 * 107.11492 * 180.22352 * 3 2 1 5 5 O 1.33930 * 108.76990 * 359.77618 * 4 3 2 6 6 C 1.34914 * 109.38205 * 359.97438 * 5 4 3 7 7 C 1.46655 * 125.98751 * 179.97438 * 6 5 4 8 8 O 1.21691 * 120.00196 * 180.02562 * 7 6 5 9 9 N 1.34779 * 120.00158 * 0.03000 * 7 6 5 10 10 C 1.46496 * 120.00193 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.91190 * 328.89686 * 10 9 7 12 12 C 1.55157 * 110.99995 * 204.99828 * 10 9 7 13 13 C 1.54330 * 102.94049 * 206.41920 * 12 10 9 14 14 N 1.47019 * 107.26866 * 22.19588 * 13 12 10 15 15 C 1.34775 * 125.64595 * 181.01194 * 14 13 12 16 16 O 1.21283 * 120.00070 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00352 * 0.05354 * 15 14 13 18 18 S 1.81001 * 109.47571 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00129 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99953 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00089 * 180.02562 * 19 18 17 22 22 N 1.31630 * 119.99828 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00091 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47059 * 90.00195 * 23 21 19 25 25 H 1.48501 * 109.47110 * 209.99812 * 23 21 19 26 26 H 1.48499 * 109.47349 * 330.00068 * 23 21 19 27 27 C 1.47426 * 108.70376 * 1.05523 * 14 13 12 28 28 H 1.08999 * 109.47386 * 270.15594 * 1 2 3 29 29 H 1.09000 * 109.46812 * 30.15842 * 1 2 3 30 30 H 1.09002 * 109.46802 * 150.15452 * 1 2 3 31 31 H 1.08004 * 126.43998 * 359.97429 * 3 2 1 32 32 H 1.08006 * 125.61546 * 179.78161 * 4 3 2 33 33 H 0.97006 * 119.99699 * 359.97438 * 9 7 6 34 34 H 1.08996 * 110.72695 * 324.78280 * 12 10 9 35 35 H 1.09002 * 110.72001 * 88.06093 * 12 10 9 36 36 H 1.09000 * 109.88165 * 141.60879 * 13 12 10 37 37 H 1.08996 * 109.88261 * 262.77631 * 13 12 10 38 38 H 1.09005 * 109.46950 * 300.00329 * 17 15 14 39 39 H 1.08998 * 109.46872 * 59.99621 * 17 15 14 40 40 H 0.97003 * 120.00022 * 180.02562 * 22 21 19 41 41 H 1.09004 * 110.36498 * 217.03293 * 27 14 13 42 42 H 1.09000 * 110.45813 * 94.76043 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1261 0.0000 4 6 3.6184 0.6743 -0.0050 5 8 3.6005 -0.6649 -0.0031 6 6 2.3220 -1.0956 0.0037 7 6 1.8842 -2.4953 0.0072 8 8 0.6968 -2.7614 0.0129 9 7 2.7970 -3.4869 0.0041 10 6 2.3597 -4.8851 0.0070 11 1 1.4137 -4.9957 0.5371 12 6 3.4493 -5.8072 0.6153 13 6 3.1655 -7.1672 -0.0566 14 7 2.4226 -6.8952 -1.2958 15 6 1.9702 -7.8248 -2.1605 16 8 1.3667 -7.4844 -3.1559 17 6 2.2136 -9.2872 -1.8902 18 16 1.4898 -10.2758 -3.2225 19 6 1.9107 -11.8938 -2.6663 20 1 2.4593 -12.0225 -1.7449 21 6 1.5383 -13.0031 -3.4129 22 7 0.8710 -12.8462 -4.5367 23 14 1.9851 -14.7184 -2.8236 24 1 0.8974 -15.2442 -1.9600 25 1 2.1634 -15.6135 -3.9951 26 1 3.2497 -14.6614 -2.0473 27 6 2.2554 -5.4373 -1.4364 28 1 -0.3634 0.0028 1.0276 29 1 -0.3633 0.8886 -0.5163 30 1 -0.3633 -0.8914 -0.5115 31 1 2.0307 2.1595 -0.0004 32 1 4.5047 1.2915 -0.0097 33 1 3.7436 -3.2748 -0.0008 34 1 4.4458 -5.4496 0.3564 35 1 3.3333 -5.8797 1.6967 36 1 4.1048 -7.6685 -0.2901 37 1 2.5652 -7.7902 0.6064 38 1 3.2864 -9.4739 -1.8403 39 1 1.7524 -9.5631 -0.9419 40 1 0.6104 -13.6215 -5.0582 41 1 1.2783 -5.2067 -1.8611 42 1 3.0469 -5.0214 -2.0599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523005898.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:27 Heat of formation + Delta-G solvation = -79.355163 kcal Electronic energy + Delta-G solvation = -25688.815773 eV Core-core repulsion = 21760.810577 eV Total energy + Delta-G solvation = -3928.005196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.68376 -41.37939 -40.40455 -38.52388 -35.74968 -34.90724 -34.58934 -32.50661 -31.30969 -30.88250 -29.40485 -28.29291 -27.63985 -24.97201 -23.83620 -22.54690 -21.95535 -21.08739 -20.74390 -19.67631 -19.17926 -18.17655 -17.85044 -17.41929 -16.99657 -16.88968 -16.76121 -16.47057 -15.87098 -15.63312 -15.43195 -15.23197 -14.58668 -14.54454 -14.33602 -14.17597 -14.05653 -13.90636 -13.86701 -13.54050 -13.44428 -13.16577 -12.89010 -12.86198 -12.78479 -12.68380 -12.61276 -11.90056 -11.74760 -11.34321 -11.14457 -11.06831 -10.68763 -10.44573 -10.28850 -9.77739 -9.58746 -8.69407 -8.34766 -6.14057 -0.01077 1.19179 1.39384 1.41926 1.43125 1.50450 1.54533 1.62734 1.93988 2.01860 2.26445 2.28959 2.99421 3.18521 3.37816 3.48327 3.71873 3.79981 3.86849 3.93663 3.94403 4.14021 4.20246 4.28708 4.43294 4.52138 4.57486 4.61981 4.68736 4.73178 4.73985 4.78576 4.90011 5.01624 5.09846 5.15534 5.21612 5.33337 5.41512 5.44952 5.83518 6.19585 6.30547 6.36404 6.94512 7.05040 7.06194 8.74614 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.033186 B = 0.001859 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.536196 B =15061.890535 C =15442.103053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.095 4.095 3 C -0.239 4.239 4 C 0.019 3.981 5 O -0.167 6.167 6 C -0.119 4.119 7 C 0.602 3.398 8 O -0.552 6.552 9 N -0.695 5.695 10 C 0.141 3.859 11 H 0.097 0.903 12 C -0.116 4.116 13 C 0.090 3.910 14 N -0.616 5.616 15 C 0.545 3.455 16 O -0.569 6.569 17 C -0.117 4.117 18 S -0.156 6.156 19 C -0.544 4.544 20 H 0.085 0.915 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.256 1.256 27 C 0.095 3.905 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.180 0.820 32 H 0.257 0.743 33 H 0.421 0.579 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.271 0.729 41 H 0.048 0.952 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.769 28.630 17.657 35.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.098 4.098 3 C -0.258 4.258 4 C -0.050 4.050 5 O -0.063 6.063 6 C -0.170 4.170 7 C 0.390 3.610 8 O -0.431 6.431 9 N -0.346 5.346 10 C 0.035 3.965 11 H 0.115 0.885 12 C -0.154 4.154 13 C -0.031 4.031 14 N -0.351 5.351 15 C 0.333 3.667 16 O -0.448 6.448 17 C -0.268 4.268 18 S 0.071 5.929 19 C -0.692 4.692 20 H 0.104 0.896 21 C -0.193 4.193 22 N -0.549 5.549 23 Si 0.823 3.177 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.179 1.179 27 C -0.030 4.030 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.197 0.803 32 H 0.273 0.727 33 H 0.260 0.740 34 H 0.129 0.871 35 H 0.138 0.862 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.203 28.579 16.015 34.312 hybrid contribution 0.656 -1.134 0.691 1.482 sum 10.859 27.444 16.707 33.915 Atomic orbital electron populations 1.20432 0.88402 1.03418 1.03084 1.21029 0.98105 0.92136 0.98575 1.22101 0.92489 1.00679 1.10505 1.25345 1.01286 0.79659 0.98739 1.84040 1.27108 1.24119 1.70987 1.21524 0.82642 0.94081 1.18800 1.16782 0.85464 0.82823 0.75923 1.90876 1.17317 1.83012 1.51945 1.45560 1.10457 1.04528 1.74081 1.21979 1.00499 0.80122 0.93915 0.88459 1.22952 0.98964 0.91205 1.02305 1.22425 0.97374 0.99185 0.84161 1.48294 1.56622 1.05796 1.24397 1.19898 0.77703 0.87193 0.81870 1.90698 1.42449 1.82304 1.29330 1.23286 1.05965 0.93144 1.04394 1.85673 1.74726 1.01617 1.30896 1.23193 1.42561 0.91439 1.11998 0.89642 1.26175 0.94238 1.04372 0.94523 1.70197 1.37445 1.32446 1.14788 0.84916 0.79219 0.75663 0.77940 1.19335 1.20354 1.17932 1.22582 1.01581 0.80071 0.98721 0.90358 0.89519 0.91950 0.80293 0.72717 0.74025 0.87149 0.86196 0.88903 0.89692 0.86972 0.87230 0.92003 0.93305 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 9.81 71.24 0.70 -0.98 16 2 C -0.10 -1.66 6.20 -19.74 -0.12 -1.78 16 3 C -0.24 -2.50 10.83 22.07 0.24 -2.26 16 4 C 0.02 0.14 12.08 67.10 0.81 0.95 16 5 O -0.17 -2.19 10.40 -5.03 -0.05 -2.24 16 6 C -0.12 -2.22 7.13 24.07 0.17 -2.05 16 7 C 0.60 13.18 7.79 86.44 0.67 13.86 16 8 O -0.55 -16.19 14.38 -4.32 -0.06 -16.26 16 9 N -0.69 -10.89 5.19 -439.96 -2.28 -13.17 16 10 C 0.14 2.50 3.42 46.38 0.16 2.66 16 11 H 0.10 2.09 7.54 -2.39 -0.02 2.08 16 12 C -0.12 -1.17 6.60 31.78 0.21 -0.96 16 13 C 0.09 1.53 6.49 86.73 0.56 2.09 16 14 N -0.62 -17.55 3.33 -811.81 -2.70 -20.25 16 15 C 0.54 21.90 7.87 87.66 0.69 22.59 16 16 O -0.57 -28.81 16.12 -3.04 -0.05 -28.86 16 17 C -0.12 -4.79 5.35 71.24 0.38 -4.41 16 18 S -0.16 -8.91 20.57 -56.49 -1.16 -10.07 16 19 C -0.54 -31.29 9.50 67.95 0.65 -30.65 16 20 H 0.09 4.51 7.80 -2.91 -0.02 4.49 16 21 C 0.01 0.66 5.49 84.86 0.47 1.13 16 22 N -0.91 -56.74 13.22 21.65 0.29 -56.46 16 23 Si 1.00 43.71 29.55 68.60 2.03 45.73 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 25 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 27 C 0.09 2.46 6.60 86.85 0.57 3.03 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.42 6.45 -2.39 -0.02 1.41 16 31 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 32 H 0.26 -0.79 8.06 -2.91 -0.02 -0.82 16 33 H 0.42 4.09 8.32 -92.70 -0.77 3.32 16 34 H 0.11 0.61 8.00 -2.39 -0.02 0.59 16 35 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 39 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 40 H 0.27 15.63 8.31 -92.71 -0.77 14.85 16 41 H 0.05 1.62 8.04 -2.38 -0.02 1.60 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -88.21 374.95 2.44 -85.77 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.28 Total: 12.58 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 6.16 Total: 3.22 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -4.70 Total: -89.88 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -0.16 Total: -47.36 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.16 Total: -10.07 kcal Total: -88.21 2.44 -85.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523005898.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.414 kcal (2) G-P(sol) polarization free energy of solvation -88.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds