Wall clock time and date at job start Tue Mar 31 2020 20:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34187 * 127.02050 * 2 1 4 4 O 1.34213 * 109.12651 * 179.97438 * 3 2 1 5 5 C 1.33654 * 110.90585 * 359.72882 * 4 3 2 6 6 C 1.36420 * 108.39975 * 0.44350 * 5 4 3 7 7 C 1.47380 * 127.19401 * 179.83713 * 6 5 4 8 8 O 1.21602 * 120.00041 * 179.68518 * 7 6 5 9 9 N 1.34773 * 119.99715 * 359.68755 * 7 6 5 10 10 C 1.46505 * 119.99825 * 179.97438 * 9 7 6 11 11 H 1.08994 * 112.84888 * 336.20094 * 10 9 7 12 12 C 1.53777 * 113.61158 * 107.50216 * 10 9 7 13 13 C 1.53782 * 87.08001 * 139.98301 * 12 10 9 14 14 H 1.08999 * 113.68864 * 220.00753 * 13 12 10 15 15 N 1.46496 * 113.61293 * 89.11960 * 13 12 10 16 16 C 1.34777 * 120.00266 * 107.50556 * 15 13 12 17 17 O 1.21274 * 120.00135 * 0.27234 * 16 15 13 18 18 C 1.50706 * 119.99766 * 179.97438 * 16 15 13 19 19 S 1.81003 * 109.46851 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99843 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00031 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00514 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99567 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46941 * 90.00284 * 24 22 20 26 26 H 1.48505 * 109.46872 * 209.99797 * 24 22 20 27 27 H 1.48493 * 109.47194 * 329.99916 * 24 22 20 28 28 C 1.53772 * 113.61651 * 205.00110 * 10 9 7 29 29 H 1.08995 * 109.47249 * 270.02238 * 1 2 3 30 30 H 1.08995 * 109.47516 * 30.03278 * 1 2 3 31 31 H 1.09009 * 109.46437 * 150.02842 * 1 2 3 32 32 H 1.08004 * 125.43101 * 359.97438 * 3 2 1 33 33 H 1.08003 * 125.80002 * 180.28383 * 5 4 3 34 34 H 0.96999 * 120.00578 * 0.02562 * 9 7 6 35 35 H 1.09006 * 113.61677 * 25.43864 * 12 10 9 36 36 H 1.09003 * 113.61817 * 254.53021 * 12 10 9 37 37 H 0.96999 * 119.99691 * 287.49542 * 15 13 12 38 38 H 1.09000 * 109.47161 * 299.99737 * 18 16 15 39 39 H 1.09001 * 109.46740 * 59.99879 * 18 16 15 40 40 H 0.96995 * 120.00407 * 179.97438 * 23 22 20 41 41 H 1.09001 * 113.61879 * 105.47288 * 28 10 9 42 42 H 1.09005 * 113.61783 * 334.56810 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0714 0.0000 4 8 3.5921 0.6590 0.0006 5 6 3.6624 -0.6757 0.0069 6 6 2.3923 -1.1737 0.0006 7 6 1.9915 -2.5920 0.0008 8 8 0.8127 -2.8907 0.0005 9 7 2.9315 -3.5578 0.0014 10 6 2.5331 -4.9677 0.0021 11 1 1.5336 -5.1248 0.4075 12 6 2.7734 -5.6764 -1.3413 13 6 3.2380 -6.8946 -0.5258 14 1 4.1035 -7.4023 -0.9516 15 7 2.1534 -7.8152 -0.1764 16 6 2.0591 -9.0103 -0.7923 17 8 2.8750 -9.3256 -1.6323 18 6 0.9435 -9.9575 -0.4324 19 16 1.0879 -11.4644 -1.4246 20 6 -0.2994 -12.3648 -0.8171 21 1 -0.9300 -11.9345 -0.0531 22 6 -0.5813 -13.6276 -1.3196 23 7 0.1881 -14.1527 -2.2496 24 14 -2.0517 -14.5825 -0.6749 25 1 -3.2480 -14.2616 -1.4940 26 1 -1.7713 -16.0385 -0.7577 27 1 -2.3046 -14.2067 0.7392 28 6 3.5943 -5.9074 0.5981 29 1 -0.3633 0.0004 1.0276 30 1 -0.3634 0.8896 -0.5143 31 1 -0.3632 -0.8904 -0.5135 32 1 1.9893 2.1012 -0.0004 33 1 4.5703 -1.2605 0.0130 34 1 3.8718 -3.3196 0.0020 35 1 3.5647 -5.2233 -1.9386 36 1 1.8610 -5.8542 -1.9105 37 1 1.5031 -7.5646 0.4983 38 1 1.0093 -10.2110 0.6257 39 1 -0.0163 -9.4813 -0.6330 40 1 -0.0087 -15.0353 -2.6006 41 1 3.3448 -6.2718 1.5947 42 1 4.6100 -5.5175 0.5311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524877627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:19 Heat of formation + Delta-G solvation = -41.012126 kcal Electronic energy + Delta-G solvation = -25183.659502 eV Core-core repulsion = 21257.316985 eV Total energy + Delta-G solvation = -3926.342517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.02454 -40.59121 -39.27290 -37.87291 -34.37294 -34.23785 -32.63994 -32.41899 -30.83560 -29.02377 -27.62889 -26.03606 -25.56061 -25.22443 -23.24960 -21.09066 -20.97986 -20.44181 -19.68670 -18.39216 -17.85425 -16.94184 -16.67320 -16.39512 -16.07608 -15.96705 -15.31502 -15.08741 -14.88300 -14.79703 -14.34381 -14.02654 -13.80619 -13.63187 -13.42401 -13.17323 -12.95327 -12.91075 -12.81698 -12.68424 -12.24603 -11.92782 -11.89994 -11.10102 -11.05139 -11.01886 -10.81413 -10.75305 -10.27149 -9.99589 -9.81028 -9.44666 -9.38646 -9.15099 -9.06372 -8.91264 -8.23711 -6.49596 -6.21077 -3.91639 0.87636 1.59200 2.44341 2.76792 2.97071 2.98876 3.03980 3.23365 3.28335 3.32244 3.67307 4.02062 4.11584 4.17349 4.21088 4.31030 4.55575 4.67636 4.73458 4.84022 4.97054 5.11018 5.14209 5.31757 5.32325 5.35804 5.39957 5.51607 5.52566 5.58717 5.62024 5.65239 5.82482 5.88920 5.91997 6.06698 6.13871 6.15532 6.47881 6.63999 7.11662 7.60428 7.66493 7.87272 8.36021 8.57815 9.24378 10.86345 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.025615 B = 0.001725 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.838589 B =16228.552761 C =17012.274524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.131 4.131 3 C -0.047 4.047 4 O -0.172 6.172 5 C 0.021 3.979 6 C -0.234 4.234 7 C 0.587 3.413 8 O -0.529 6.529 9 N -0.717 5.717 10 C 0.123 3.877 11 H 0.117 0.883 12 C -0.165 4.165 13 C 0.129 3.871 14 H 0.110 0.890 15 N -0.723 5.723 16 C 0.536 3.464 17 O -0.515 6.515 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C -0.153 4.153 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.208 0.792 33 H 0.211 0.789 34 H 0.397 0.603 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.399 0.601 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.268 0.732 41 H 0.082 0.918 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.079 31.402 7.680 33.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C -0.113 4.113 4 O -0.067 6.067 5 C -0.050 4.050 6 C -0.239 4.239 7 C 0.374 3.626 8 O -0.406 6.406 9 N -0.367 5.367 10 C 0.019 3.981 11 H 0.135 0.865 12 C -0.205 4.205 13 C 0.022 3.978 14 H 0.128 0.872 15 N -0.376 5.376 16 C 0.322 3.678 17 O -0.389 6.389 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.192 4.192 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.225 0.775 33 H 0.227 0.773 34 H 0.232 0.768 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.234 0.766 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.841 30.678 6.153 32.514 hybrid contribution -1.796 -0.059 1.686 2.464 sum 7.046 30.619 7.839 32.383 Atomic orbital electron populations 1.20258 0.88196 1.03386 1.02690 1.21463 0.97406 0.90328 1.04100 1.23758 0.79562 0.99805 1.08171 1.83787 1.29755 1.22280 1.70846 1.24409 0.98707 0.81277 1.00589 1.21465 0.93439 0.94340 1.14608 1.17306 0.85694 0.83740 0.75836 1.90791 1.17305 1.83201 1.49299 1.45837 1.09123 1.06060 1.75726 1.22693 0.99904 0.78116 0.97413 0.86489 1.23968 1.03074 0.96314 0.97137 1.21523 0.91751 0.89063 0.95476 0.87230 1.45729 1.30809 1.17399 1.43690 1.20337 0.85957 0.80936 0.80530 1.90697 1.41567 1.75030 1.31593 1.23544 0.99030 1.02022 1.05895 1.85383 1.39269 1.07952 1.50709 1.22872 1.14125 1.04457 1.26937 0.90893 1.24991 0.97266 0.96543 0.94772 1.70013 1.37197 1.16831 1.26258 0.86166 0.81451 0.78700 0.79177 1.20267 1.20753 1.19693 1.23753 0.99690 0.96053 0.99692 0.91100 0.91628 0.89819 0.77534 0.77303 0.76831 0.88947 0.90222 0.76638 0.89105 0.89101 0.92184 0.89894 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 10.00 36.00 0.36 -0.33 16 2 C -0.13 -1.08 6.37 -102.49 -0.65 -1.73 16 3 C -0.05 -0.28 11.96 29.30 0.35 0.07 16 4 O -0.17 -1.10 10.52 7.65 0.08 -1.02 16 5 C 0.02 0.11 11.61 30.08 0.35 0.46 16 6 C -0.23 -1.97 6.31 -103.27 -0.65 -2.63 16 7 C 0.59 5.98 7.81 -12.54 -0.10 5.88 16 8 O -0.53 -7.44 15.00 5.28 0.08 -7.36 16 9 N -0.72 -5.16 5.35 -54.11 -0.29 -5.44 16 10 C 0.12 1.03 4.12 -67.12 -0.28 0.76 16 11 H 0.12 1.18 7.46 -51.93 -0.39 0.80 16 12 C -0.16 -1.61 7.68 -25.92 -0.20 -1.80 16 13 C 0.13 1.37 4.33 -67.12 -0.29 1.08 16 14 H 0.11 1.34 7.46 -51.93 -0.39 0.95 16 15 N -0.72 -9.28 5.26 -53.02 -0.28 -9.56 16 16 C 0.54 9.80 7.85 -10.98 -0.09 9.71 16 17 O -0.52 -11.46 15.46 5.56 0.09 -11.38 16 18 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -15.31 9.50 30.94 0.29 -15.01 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 24 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 C -0.15 -1.07 7.58 -25.93 -0.20 -1.26 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.85 6.91 -51.92 -0.36 0.49 16 32 H 0.21 0.51 8.06 -52.48 -0.42 0.09 16 33 H 0.21 0.23 7.47 -52.48 -0.39 -0.16 16 34 H 0.40 1.51 7.70 -40.82 -0.31 1.20 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.40 4.11 8.70 -40.82 -0.36 3.75 16 38 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 39 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.47 8.12 -51.93 -0.42 0.05 16 LS Contribution 378.03 15.07 5.70 5.70 Total: -1.00 -38.26 378.03 -7.64 -45.90 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.54 Total: 1.67 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -0.97 Total: -5.68 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.17 Total: -40.49 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: 0.25 Total: -19.76 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.26 -7.64 -45.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524877627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.890 kcal (2) G-P(sol) polarization free energy of solvation -38.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds