Wall clock time and date at job start Tue Mar 31 2020 20:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34187 * 127.02050 * 2 1 4 4 O 1.34213 * 109.12651 * 179.97438 * 3 2 1 5 5 C 1.33654 * 110.90585 * 359.72882 * 4 3 2 6 6 C 1.36420 * 108.39975 * 0.44350 * 5 4 3 7 7 C 1.47380 * 127.19401 * 179.83713 * 6 5 4 8 8 O 1.21602 * 120.00041 * 179.68518 * 7 6 5 9 9 N 1.34773 * 119.99715 * 359.68755 * 7 6 5 10 10 C 1.46505 * 119.99825 * 179.97438 * 9 7 6 11 11 H 1.08994 * 112.84888 * 336.20094 * 10 9 7 12 12 C 1.53777 * 113.61158 * 107.50216 * 10 9 7 13 13 C 1.53782 * 87.08001 * 139.98301 * 12 10 9 14 14 H 1.08999 * 113.68864 * 220.00753 * 13 12 10 15 15 N 1.46496 * 113.61293 * 89.11960 * 13 12 10 16 16 C 1.34777 * 120.00266 * 107.50556 * 15 13 12 17 17 O 1.21274 * 120.00135 * 0.27234 * 16 15 13 18 18 C 1.50706 * 119.99766 * 179.97438 * 16 15 13 19 19 S 1.81003 * 109.46851 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99843 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00031 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00514 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99567 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46941 * 90.00284 * 24 22 20 26 26 H 1.48505 * 109.46872 * 209.99797 * 24 22 20 27 27 H 1.48493 * 109.47194 * 329.99916 * 24 22 20 28 28 C 1.53772 * 113.61651 * 205.00110 * 10 9 7 29 29 H 1.08995 * 109.47249 * 270.02238 * 1 2 3 30 30 H 1.08995 * 109.47516 * 30.03278 * 1 2 3 31 31 H 1.09009 * 109.46437 * 150.02842 * 1 2 3 32 32 H 1.08004 * 125.43101 * 359.97438 * 3 2 1 33 33 H 1.08003 * 125.80002 * 180.28383 * 5 4 3 34 34 H 0.96999 * 120.00578 * 0.02562 * 9 7 6 35 35 H 1.09006 * 113.61677 * 25.43864 * 12 10 9 36 36 H 1.09003 * 113.61817 * 254.53021 * 12 10 9 37 37 H 0.96999 * 119.99691 * 287.49542 * 15 13 12 38 38 H 1.09000 * 109.47161 * 299.99737 * 18 16 15 39 39 H 1.09001 * 109.46740 * 59.99879 * 18 16 15 40 40 H 0.96995 * 120.00407 * 179.97438 * 23 22 20 41 41 H 1.09001 * 113.61879 * 105.47288 * 28 10 9 42 42 H 1.09005 * 113.61783 * 334.56810 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0714 0.0000 4 8 3.5921 0.6590 0.0006 5 6 3.6624 -0.6757 0.0069 6 6 2.3923 -1.1737 0.0006 7 6 1.9915 -2.5920 0.0008 8 8 0.8127 -2.8907 0.0005 9 7 2.9315 -3.5578 0.0014 10 6 2.5331 -4.9677 0.0021 11 1 1.5336 -5.1248 0.4075 12 6 2.7734 -5.6764 -1.3413 13 6 3.2380 -6.8946 -0.5258 14 1 4.1035 -7.4023 -0.9516 15 7 2.1534 -7.8152 -0.1764 16 6 2.0591 -9.0103 -0.7923 17 8 2.8750 -9.3256 -1.6323 18 6 0.9435 -9.9575 -0.4324 19 16 1.0879 -11.4644 -1.4246 20 6 -0.2994 -12.3648 -0.8171 21 1 -0.9300 -11.9345 -0.0531 22 6 -0.5813 -13.6276 -1.3196 23 7 0.1881 -14.1527 -2.2496 24 14 -2.0517 -14.5825 -0.6749 25 1 -3.2480 -14.2616 -1.4940 26 1 -1.7713 -16.0385 -0.7577 27 1 -2.3046 -14.2067 0.7392 28 6 3.5943 -5.9074 0.5981 29 1 -0.3633 0.0004 1.0276 30 1 -0.3634 0.8896 -0.5143 31 1 -0.3632 -0.8904 -0.5135 32 1 1.9893 2.1012 -0.0004 33 1 4.5703 -1.2605 0.0130 34 1 3.8718 -3.3196 0.0020 35 1 3.5647 -5.2233 -1.9386 36 1 1.8610 -5.8542 -1.9105 37 1 1.5031 -7.5646 0.4983 38 1 1.0093 -10.2110 0.6257 39 1 -0.0163 -9.4813 -0.6330 40 1 -0.0087 -15.0353 -2.6006 41 1 3.3448 -6.2718 1.5947 42 1 4.6100 -5.5175 0.5311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524877627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:18 Heat of formation + Delta-G solvation = -70.076463 kcal Electronic energy + Delta-G solvation = -25184.919826 eV Core-core repulsion = 21257.316985 eV Total energy + Delta-G solvation = -3927.602842 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.50010 -41.49434 -40.34654 -38.95549 -35.31224 -34.78374 -34.59164 -33.72319 -31.46135 -30.48186 -28.15637 -27.68718 -26.75041 -26.05969 -23.95143 -22.25839 -21.48044 -21.22394 -20.56385 -19.83802 -18.93548 -18.11335 -17.31325 -17.16071 -17.06430 -16.88836 -16.87926 -16.39482 -16.00517 -15.80907 -15.76056 -15.04594 -14.65554 -14.62993 -14.37119 -14.25052 -14.06784 -13.95941 -13.49043 -13.43095 -13.35643 -13.17575 -13.10886 -12.89864 -12.59280 -12.46200 -11.93568 -11.74323 -11.61939 -11.15023 -11.08772 -10.96315 -10.59890 -10.29146 -10.17819 -9.98223 -9.60305 -8.67178 -8.35365 -6.13316 0.37028 1.07396 1.25947 1.41844 1.45992 1.56728 1.57467 2.01719 2.18392 2.23306 2.27771 2.29698 2.98706 3.30761 3.37569 3.56067 3.61452 3.67623 3.86803 3.94691 4.02598 4.09493 4.29455 4.34620 4.49625 4.50043 4.59505 4.71215 4.77516 4.78777 4.87738 4.95395 4.98753 5.01780 5.06357 5.07829 5.39494 5.41381 5.49594 5.62204 6.00802 6.19237 6.46198 6.54865 7.05993 7.21428 7.22148 8.73836 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.025615 B = 0.001725 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.838589 B =16228.552761 C =17012.274524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.169 4.169 3 C -0.034 4.034 4 O -0.175 6.175 5 C 0.049 3.951 6 C -0.273 4.273 7 C 0.583 3.417 8 O -0.581 6.581 9 N -0.699 5.699 10 C 0.126 3.874 11 H 0.098 0.902 12 C -0.163 4.163 13 C 0.113 3.887 14 H 0.096 0.904 15 N -0.699 5.699 16 C 0.539 3.461 17 O -0.562 6.562 18 C -0.132 4.132 19 S -0.148 6.148 20 C -0.548 4.548 21 H 0.082 0.918 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.998 3.002 25 H -0.269 1.269 26 H -0.276 1.276 27 H -0.258 1.258 28 C -0.124 4.124 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.240 0.760 33 H 0.254 0.746 34 H 0.417 0.583 35 H 0.111 0.889 36 H 0.050 0.950 37 H 0.414 0.586 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.271 0.729 41 H 0.094 0.906 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.015 33.613 9.600 36.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.171 4.171 3 C -0.099 4.099 4 O -0.069 6.069 5 C -0.021 4.021 6 C -0.277 4.277 7 C 0.372 3.628 8 O -0.462 6.462 9 N -0.350 5.350 10 C 0.021 3.979 11 H 0.116 0.884 12 C -0.203 4.203 13 C 0.007 3.993 14 H 0.114 0.886 15 N -0.352 5.352 16 C 0.325 3.675 17 O -0.440 6.440 18 C -0.283 4.283 19 S 0.079 5.921 20 C -0.696 4.696 21 H 0.100 0.900 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.194 1.194 26 H -0.201 1.201 27 H -0.182 1.182 28 C -0.162 4.162 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.256 0.744 33 H 0.270 0.730 34 H 0.255 0.745 35 H 0.129 0.871 36 H 0.069 0.931 37 H 0.251 0.749 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.817 32.953 8.112 35.328 hybrid contribution -2.014 -0.581 1.089 2.362 sum 7.803 32.372 9.201 34.547 Atomic orbital electron populations 1.20168 0.88776 1.02808 1.02339 1.21699 0.97666 0.91447 1.06251 1.24286 0.78960 1.00602 1.06101 1.83833 1.29860 1.22709 1.70511 1.25150 0.98972 0.80979 0.97004 1.21487 0.95078 0.93465 1.17708 1.17657 0.85302 0.84882 0.74958 1.90765 1.19471 1.84017 1.51917 1.45629 1.09829 1.05034 1.74524 1.22507 0.99835 0.79025 0.96511 0.88398 1.23981 1.02359 0.96239 0.97693 1.21765 0.90485 0.88977 0.98096 0.88610 1.45489 1.31413 1.15785 1.42561 1.20018 0.84966 0.82137 0.80420 1.90683 1.43095 1.76310 1.33863 1.23395 1.00708 0.98873 1.05369 1.85525 1.40129 1.12706 1.53733 1.23212 1.14222 1.05010 1.27149 0.89999 1.26119 1.00533 0.97638 0.94809 1.70174 1.39356 1.17384 1.27760 0.84959 0.77076 0.76934 0.79042 1.19424 1.20148 1.18234 1.23673 1.00854 0.93169 0.98545 0.91415 0.89558 0.92944 0.74381 0.72982 0.74472 0.87089 0.93077 0.74866 0.87019 0.87573 0.91961 0.88793 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.00 71.24 0.71 -0.66 16 2 C -0.17 -2.67 6.37 -18.48 -0.12 -2.78 16 3 C -0.03 -0.33 11.96 66.90 0.80 0.47 16 4 O -0.17 -1.69 10.52 4.47 0.05 -1.64 16 5 C 0.05 0.37 11.61 67.40 0.78 1.16 16 6 C -0.27 -4.26 6.31 -18.99 -0.12 -4.38 16 7 C 0.58 11.59 7.81 86.65 0.68 12.26 16 8 O -0.58 -17.10 15.00 -4.04 -0.06 -17.16 16 9 N -0.70 -8.54 5.35 -443.37 -2.37 -10.91 16 10 C 0.13 1.91 4.12 45.51 0.19 2.10 16 11 H 0.10 1.93 7.46 -2.39 -0.02 1.92 16 12 C -0.16 -3.02 7.68 31.12 0.24 -2.78 16 13 C 0.11 2.25 4.33 45.52 0.20 2.44 16 14 H 0.10 2.26 7.46 -2.39 -0.02 2.25 16 15 N -0.70 -17.33 5.26 -440.05 -2.32 -19.65 16 16 C 0.54 19.78 7.85 87.66 0.69 20.47 16 17 O -0.56 -25.73 15.46 -3.01 -0.05 -25.77 16 18 C -0.13 -5.30 6.16 71.24 0.44 -4.86 16 19 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16 20 C -0.55 -31.66 9.50 67.96 0.65 -31.01 16 21 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 22 C 0.01 0.80 5.49 84.86 0.47 1.26 16 23 N -0.91 -56.27 13.22 21.65 0.29 -55.98 16 24 Si 1.00 44.07 29.55 68.60 2.03 46.10 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 27 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 28 C -0.12 -1.32 7.58 31.12 0.24 -1.08 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 1.17 6.91 -2.38 -0.02 1.15 16 32 H 0.24 0.43 8.06 -2.91 -0.02 0.41 16 33 H 0.25 -0.74 7.47 -2.91 -0.02 -0.77 16 34 H 0.42 1.57 7.70 -92.71 -0.71 0.86 16 35 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 37 H 0.41 7.89 8.70 -92.71 -0.81 7.08 16 38 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 39 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 40 H 0.27 15.55 8.31 -92.71 -0.77 14.77 16 41 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.13 0.60 8.12 -2.38 -0.02 0.58 16 Total: -1.00 -89.32 378.03 1.79 -87.53 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -0.45 Total: 14.32 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 5.83 Total: -7.40 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -4.40 Total: -86.54 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -0.06 Total: -44.57 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal Total: -89.32 1.79 -87.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524877627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.457 kcal (2) G-P(sol) polarization free energy of solvation -89.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds