Wall clock time and date at job start Tue Mar 31 2020 20:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35133 * 125.61881 * 2 1 4 4 C 1.40358 * 107.11422 * 179.78305 * 3 2 1 5 5 C 1.36545 * 106.70968 * 0.40987 * 4 3 2 6 6 C 1.46658 * 125.98669 * 179.85207 * 5 4 3 7 7 O 1.21695 * 119.99873 * 359.71495 * 6 5 4 8 8 N 1.34777 * 119.99931 * 179.71254 * 6 5 4 9 9 C 1.46496 * 120.00096 * 179.97438 * 8 6 5 10 10 H 1.09001 * 112.84726 * 23.81149 * 9 8 6 11 11 C 1.53784 * 113.61316 * 155.00450 * 9 8 6 12 12 C 1.53777 * 87.08091 * 89.20332 * 11 9 8 13 13 H 1.08998 * 113.61232 * 140.06421 * 12 11 9 14 14 N 1.46497 * 113.61431 * 270.88244 * 12 11 9 15 15 C 1.34773 * 120.00328 * 203.46977 * 14 12 11 16 16 O 1.21287 * 119.99548 * 0.02562 * 15 14 12 17 17 C 1.50695 * 120.00396 * 179.97438 * 15 14 12 18 18 S 1.81000 * 109.47338 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00265 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99604 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00161 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00140 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00142 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 59.99698 * 23 21 19 25 25 H 1.48503 * 109.47261 * 299.99879 * 23 21 19 26 26 H 1.48500 * 109.47454 * 179.97438 * 23 21 19 27 27 C 1.53786 * 87.17194 * 25.47359 * 12 11 9 28 28 O 1.33929 * 125.61589 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47303 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46857 * 299.98165 * 1 2 3 31 31 H 1.09003 * 109.47075 * 59.97944 * 1 2 3 32 32 H 1.08000 * 126.43826 * 0.03613 * 3 2 1 33 33 H 1.08007 * 126.64300 * 180.30145 * 4 3 2 34 34 H 0.96998 * 120.00009 * 0.02562 * 8 6 5 35 35 H 1.08998 * 113.61354 * 334.64940 * 11 9 8 36 36 H 1.09000 * 113.69166 * 203.76497 * 11 9 8 37 37 H 0.97008 * 119.99878 * 23.47467 * 14 12 11 38 38 H 1.09004 * 109.47077 * 60.00506 * 17 15 14 39 39 H 1.08997 * 109.47267 * 300.00260 * 17 15 14 40 40 H 0.97001 * 119.99591 * 359.97438 * 22 21 19 41 41 H 1.09001 * 113.61061 * 89.07749 * 27 12 11 42 42 H 1.08999 * 113.61139 * 219.97259 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6530 0.0051 5 6 3.5823 -0.7117 -0.0014 6 6 4.7414 -1.6102 -0.0024 7 8 5.8680 -1.1500 -0.0024 8 7 4.5589 -2.9456 -0.0032 9 6 5.7167 -3.8431 -0.0048 10 1 6.6146 -3.3764 0.4004 11 6 5.4216 -5.2303 0.5898 12 6 5.0178 -5.6656 -0.8288 13 1 5.3502 -6.6707 -1.0882 14 7 3.6027 -5.4384 -1.1318 15 6 2.9947 -6.1617 -2.0929 16 8 3.6192 -7.0011 -2.7065 17 6 1.5389 -5.9284 -2.4042 18 16 1.0192 -7.0446 -3.7310 19 6 -0.6704 -6.5695 -3.8864 20 1 -1.0738 -5.7940 -3.2521 21 6 -1.4832 -7.1925 -4.8232 22 7 -0.9919 -8.1388 -5.5953 23 14 -3.2742 -6.6884 -4.9884 24 1 -3.3524 -5.2492 -5.3463 25 1 -3.9737 -6.9163 -3.6985 26 1 -3.9204 -7.4982 -6.0523 27 6 5.9456 -4.5559 -1.3511 28 8 2.2869 -1.0888 -0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5135 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 1.9613 2.1260 0.0005 33 1 4.5113 1.2703 0.0110 34 1 3.6610 -3.3124 -0.0036 35 1 4.5946 -5.2340 1.2998 36 1 6.3066 -5.7419 0.9683 37 1 3.1032 -4.7672 -0.6408 38 1 1.3963 -4.8956 -2.7222 39 1 0.9414 -6.1199 -1.5129 40 1 -0.0618 -8.4003 -5.5097 41 1 6.9744 -4.8825 -1.5029 42 1 5.5412 -4.0157 -2.2071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525268529.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:00 Heat of formation + Delta-G solvation = -64.726283 kcal Electronic energy + Delta-G solvation = -26279.019699 eV Core-core repulsion = 22351.648859 eV Total energy + Delta-G solvation = -3927.370840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.77480 -41.82265 -40.45388 -39.11275 -35.12091 -34.75065 -34.39975 -33.93725 -32.88082 -30.85379 -28.47040 -27.11253 -26.82855 -25.58661 -23.60153 -22.72665 -22.08282 -21.27629 -21.07592 -20.38696 -19.42211 -18.17300 -17.58909 -17.44379 -17.27478 -16.65476 -16.57200 -16.26973 -16.06214 -15.71328 -15.60280 -15.39866 -14.91293 -14.50542 -14.23421 -14.11500 -14.08623 -14.02206 -13.92677 -13.78814 -13.58994 -13.41814 -13.06894 -12.84342 -12.73105 -11.97204 -11.95388 -11.67973 -11.56392 -11.49196 -11.11356 -11.10191 -11.09522 -10.38298 -10.33782 -10.21272 -9.52633 -8.92570 -8.88043 -6.28223 -0.09827 1.14457 1.27839 1.42496 1.47642 1.52363 1.61081 1.80935 1.87004 1.97652 2.18898 2.35031 3.02527 3.11643 3.31637 3.42630 3.53201 3.74070 3.81144 3.86279 3.89535 4.03311 4.12818 4.32597 4.46207 4.50254 4.55436 4.67562 4.70385 4.71026 4.71761 4.75029 4.88644 4.91413 4.94473 5.10582 5.20105 5.40494 5.49965 5.63902 5.77730 6.14496 6.21862 6.26580 6.81966 7.05044 7.06773 8.50987 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009277 B = 0.003261 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.648333 B = 8582.952891 C =11254.984520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.027 3.973 3 C -0.232 4.232 4 C -0.115 4.115 5 C -0.119 4.119 6 C 0.609 3.391 7 O -0.551 6.551 8 N -0.696 5.696 9 C 0.116 3.884 10 H 0.113 0.887 11 C -0.125 4.125 12 C 0.105 3.895 13 H 0.094 0.906 14 N -0.697 5.697 15 C 0.537 3.463 16 O -0.557 6.557 17 C -0.112 4.112 18 S -0.193 6.193 19 C -0.614 4.614 20 H 0.077 0.923 21 C -0.018 4.018 22 N -0.914 5.914 23 Si 1.135 2.865 24 H -0.263 1.263 25 H -0.261 1.261 26 H -0.282 1.282 27 C -0.163 4.163 28 O -0.172 6.172 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.184 0.816 33 H 0.165 0.835 34 H 0.405 0.595 35 H 0.093 0.907 36 H 0.142 0.858 37 H 0.405 0.595 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.260 0.740 41 H 0.122 0.878 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.180 18.639 18.860 27.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.025 4.025 3 C -0.250 4.250 4 C -0.136 4.136 5 C -0.170 4.170 6 C 0.397 3.603 7 O -0.431 6.431 8 N -0.348 5.348 9 C 0.011 3.989 10 H 0.131 0.869 11 C -0.163 4.163 12 C 0.000 4.000 13 H 0.113 0.887 14 N -0.352 5.352 15 C 0.323 3.677 16 O -0.434 6.434 17 C -0.263 4.263 18 S 0.034 5.966 19 C -0.762 4.762 20 H 0.095 0.905 21 C -0.221 4.221 22 N -0.549 5.549 23 Si 0.953 3.047 24 H -0.187 1.187 25 H -0.186 1.186 26 H -0.207 1.207 27 C -0.203 4.203 28 O -0.069 6.069 29 H 0.100 0.900 30 H 0.132 0.868 31 H 0.124 0.876 32 H 0.201 0.799 33 H 0.183 0.817 34 H 0.242 0.758 35 H 0.112 0.888 36 H 0.160 0.840 37 H 0.242 0.758 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.071 0.929 41 H 0.140 0.860 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.584 16.919 17.038 25.181 hybrid contribution 0.343 1.344 1.239 1.860 sum 7.927 18.262 18.278 27.026 Atomic orbital electron populations 1.20687 0.81924 1.05421 1.05886 1.23658 0.95734 0.83576 0.99574 1.21933 0.91338 1.01288 1.10464 1.22244 0.99864 0.92725 0.98728 1.21862 0.82201 0.94970 1.17964 1.16637 0.86016 0.81871 0.75763 1.90853 1.23271 1.76628 1.52338 1.45682 1.10423 1.04917 1.73750 1.22159 0.89481 0.90165 0.97089 0.86863 1.23685 1.04778 0.93242 0.94623 1.22146 0.79942 1.00106 0.97797 0.88744 1.45564 1.11416 1.40159 1.38012 1.20022 0.88088 0.80321 0.79259 1.90702 1.66816 1.35041 1.50887 1.23236 0.95675 1.04339 1.03069 1.85081 1.13071 1.51825 1.46607 1.24043 0.95464 1.28448 1.28237 0.90512 1.27831 1.10474 0.92743 0.91078 1.70925 1.16633 1.28725 1.38643 0.82737 0.67695 0.76711 0.77560 1.18731 1.18584 1.20686 1.24026 1.01830 0.97058 0.97377 1.83990 1.15687 1.36053 1.71189 0.90038 0.86783 0.87553 0.79913 0.81723 0.75758 0.88843 0.84009 0.75759 0.87351 0.86679 0.92871 0.85960 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.41 71.24 0.74 0.05 16 2 C 0.03 0.42 7.31 24.97 0.18 0.60 16 3 C -0.23 -3.46 10.77 22.07 0.24 -3.22 16 4 C -0.11 -2.22 10.62 22.39 0.24 -1.99 16 5 C -0.12 -2.59 7.13 24.07 0.17 -2.42 16 6 C 0.61 14.25 7.79 86.44 0.67 14.93 16 7 O -0.55 -15.83 16.46 -4.33 -0.07 -15.90 16 8 N -0.70 -12.80 5.13 -443.59 -2.28 -15.08 16 9 C 0.12 1.87 4.33 45.61 0.20 2.07 16 10 H 0.11 1.87 7.46 -2.39 -0.02 1.85 16 11 C -0.13 -1.49 7.58 31.12 0.24 -1.26 16 12 C 0.11 2.12 4.30 45.52 0.20 2.32 16 13 H 0.09 2.26 7.50 -2.39 -0.02 2.24 16 14 N -0.70 -16.64 5.12 -440.04 -2.25 -18.89 16 15 C 0.54 19.09 7.85 87.66 0.69 19.78 16 16 O -0.56 -24.91 15.48 -3.05 -0.05 -24.96 16 17 C -0.11 -4.31 6.16 71.23 0.44 -3.87 16 18 S -0.19 -10.45 19.60 -56.49 -1.11 -11.56 16 19 C -0.61 -34.84 9.50 67.95 0.65 -34.19 16 20 H 0.08 4.04 7.80 -2.91 -0.02 4.02 16 21 C -0.02 -1.04 5.49 84.86 0.47 -0.57 16 22 N -0.91 -57.69 13.67 21.65 0.30 -57.40 16 23 Si 1.14 48.21 29.92 68.60 2.05 50.26 16 24 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 25 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 26 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 27 C -0.16 -3.13 7.70 31.21 0.24 -2.89 16 28 O -0.17 -3.42 10.40 -4.98 -0.05 -3.47 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.40 6.42 5.91 -92.71 -0.55 5.87 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.40 7.34 6.17 -92.70 -0.57 6.77 16 38 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 39 H 0.12 3.93 8.14 -2.40 -0.02 3.91 16 40 H 0.26 17.10 7.12 -92.71 -0.66 16.44 16 41 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -83.47 375.39 1.95 -81.52 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.06 Total: 26.15 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 5.35 Total: -10.66 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -4.24 Total: -91.37 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -0.17 Total: -44.33 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.05 Total: 50.26 kcal Atomic # 16 Polarization: -10.45 SS G_CDS: -1.11 Total: -11.56 kcal Total: -83.47 1.95 -81.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525268529.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.791 kcal (2) G-P(sol) polarization free energy of solvation -83.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds