Wall clock time and date at job start Tue Mar 31 2020 21:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 117.00158 * 2 1 4 4 O 1.20831 * 119.99692 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00107 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47198 * 184.74620 * 5 3 2 7 7 C 1.52998 * 109.47490 * 63.56751 * 6 5 3 8 8 N 1.46496 * 109.47247 * 183.57063 * 6 5 3 9 9 C 1.34777 * 120.00339 * 183.76400 * 8 6 5 10 10 O 1.21276 * 119.99675 * 354.29052 * 9 8 6 11 11 C 1.50703 * 120.00494 * 174.29027 * 9 8 6 12 12 S 1.80995 * 109.47348 * 179.97438 * 11 9 8 13 13 C 1.76200 * 100.00176 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99667 * 0.02562 * 13 12 11 15 15 C 1.38791 * 120.00365 * 180.02562 * 13 12 11 16 16 N 1.31635 * 120.00387 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99875 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47093 * 90.00142 * 17 15 13 19 19 H 1.48501 * 109.47135 * 210.00502 * 17 15 13 20 20 H 1.48500 * 109.46756 * 330.00111 * 17 15 13 21 21 C 1.50702 * 109.46785 * 303.56402 * 6 5 3 22 22 C 1.38675 * 120.41776 * 115.04510 * 21 6 5 23 23 C 1.38630 * 118.42308 * 180.02562 * 22 21 6 24 24 C 1.38224 * 119.16125 * 0.02562 * 23 22 21 25 25 N 1.31857 * 120.76290 * 359.97438 * 24 23 22 26 26 C 1.31888 * 121.72429 * 0.02562 * 25 24 23 27 27 H 1.08995 * 109.47238 * 300.00171 * 1 2 3 28 28 H 1.09005 * 109.47300 * 59.99932 * 1 2 3 29 29 H 1.08999 * 109.47186 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47388 * 64.74238 * 5 3 2 31 31 H 1.09001 * 109.47011 * 304.73994 * 5 3 2 32 32 H 1.09000 * 109.47117 * 300.00015 * 7 6 5 33 33 H 1.08993 * 109.47369 * 60.00104 * 7 6 5 34 34 H 1.09001 * 109.47194 * 180.02562 * 7 6 5 35 35 H 0.97000 * 120.00407 * 3.76204 * 8 6 5 36 36 H 1.08999 * 109.46951 * 300.00543 * 11 9 8 37 37 H 1.09011 * 109.46519 * 59.99952 * 11 9 8 38 38 H 0.96997 * 120.00174 * 179.97438 * 16 15 13 39 39 H 1.08006 * 120.78595 * 0.02562 * 22 21 6 40 40 H 1.07997 * 120.42032 * 180.02562 * 23 22 21 41 41 H 1.07991 * 119.61825 * 180.02562 * 24 23 22 42 42 H 1.08006 * 119.61622 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0004 2.7370 0.1189 7 6 3.5356 3.2988 1.4639 8 7 5.4604 2.8216 0.0327 9 6 6.0771 4.0096 0.1898 10 8 5.4210 5.0236 0.2990 11 6 7.5821 4.0780 0.2297 12 16 8.1023 5.7977 0.4486 13 6 9.8519 5.5892 0.4594 14 1 10.2789 4.6034 0.3485 15 6 10.6813 6.6917 0.6104 16 7 11.9884 6.5359 0.6180 17 14 9.9428 8.3969 0.8016 18 1 9.7179 8.6803 2.2418 19 1 10.8751 9.4061 0.2380 20 1 8.6483 8.4596 0.0766 21 6 3.3841 3.5369 -0.9998 22 6 2.4597 4.5331 -0.7239 23 6 1.9184 5.2430 -1.7845 24 6 2.3148 4.9361 -3.0726 25 7 3.1966 3.9819 -3.2976 26 6 3.7321 3.2864 -2.3133 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.9517 0.8561 -0.9302 31 1 3.9601 0.7088 0.8436 32 1 2.4493 3.2360 1.5280 33 1 3.9814 2.7203 2.2730 34 1 3.8445 4.3407 1.5488 35 1 5.9834 2.0225 -0.1375 36 1 7.9511 3.4777 1.0613 37 1 7.9882 3.6921 -0.7054 38 1 12.5681 7.3065 0.7232 39 1 2.1684 4.7508 0.2931 40 1 1.1960 6.0259 -1.6066 41 1 1.8982 5.4847 -3.9043 42 1 4.4511 2.5119 -2.5365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001540238523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:42 Heat of formation + Delta-G solvation = -73.344682 kcal Electronic energy + Delta-G solvation = -27343.627652 eV Core-core repulsion = 23415.883090 eV Total energy + Delta-G solvation = -3927.744562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.47183 -40.20193 -39.13682 -37.21247 -35.93898 -32.76239 -32.44589 -31.90424 -30.56486 -29.49563 -28.50943 -27.47924 -25.62763 -24.21331 -23.16006 -22.29445 -20.78332 -19.82331 -18.09475 -17.95741 -17.48757 -16.93899 -16.81977 -16.40722 -16.10709 -15.88311 -15.18526 -14.96306 -14.79167 -14.32344 -14.08786 -13.84199 -13.63919 -13.56559 -13.33044 -13.11595 -12.91017 -12.80383 -12.48843 -12.40714 -11.99020 -11.97440 -11.79087 -11.28494 -11.24232 -11.13847 -11.01625 -10.80629 -10.61672 -9.87614 -9.68308 -9.54961 -9.40761 -9.08546 -9.00705 -8.79021 -8.51218 -6.92605 -6.29845 -4.01519 1.17230 1.48352 1.84237 2.15820 2.78782 2.91131 3.28857 3.32780 3.49848 3.61505 3.85212 4.19967 4.28251 4.32173 4.49177 4.57101 4.67348 4.71601 4.73177 4.79944 4.96759 5.01653 5.02770 5.09326 5.14296 5.18947 5.21658 5.40424 5.55578 5.65681 5.72334 5.75490 5.79699 5.97187 6.00413 6.19514 6.27340 6.34801 6.47939 6.78678 7.37300 7.51805 7.93223 8.05196 8.40593 8.43780 9.16415 10.79400 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.018669 B = 0.003022 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.469486 B = 9264.424191 C = 9990.851290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.360 6.360 3 C 0.466 3.534 4 O -0.488 6.488 5 C -0.118 4.118 6 C 0.238 3.762 7 C -0.176 4.176 8 N -0.731 5.731 9 C 0.536 3.464 10 O -0.503 6.503 11 C -0.124 4.124 12 S -0.140 6.140 13 C -0.521 4.521 14 H 0.088 0.912 15 C 0.096 3.904 16 N -0.880 5.880 17 Si 0.856 3.144 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 C -0.123 4.123 22 C -0.014 4.014 23 C -0.179 4.179 24 C 0.094 3.906 25 N -0.489 5.489 26 C 0.101 3.899 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.401 0.599 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.150 0.850 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.301 -14.767 -1.377 27.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.277 6.277 3 C 0.307 3.693 4 O -0.374 6.374 5 C -0.156 4.156 6 C 0.151 3.849 7 C -0.234 4.234 8 N -0.387 5.387 9 C 0.322 3.678 10 O -0.376 6.376 11 C -0.274 4.274 12 S 0.086 5.914 13 C -0.669 4.669 14 H 0.106 0.894 15 C -0.113 4.113 16 N -0.517 5.517 17 Si 0.681 3.319 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.159 1.159 21 C -0.126 4.126 22 C -0.040 4.040 23 C -0.199 4.199 24 C -0.063 4.063 25 N -0.198 5.198 26 C -0.056 4.056 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.236 0.764 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.167 0.833 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -24.189 -12.864 -2.023 27.471 hybrid contribution 0.660 -0.583 0.753 1.159 sum -23.529 -13.447 -1.270 27.130 Atomic orbital electron populations 1.23266 0.76020 1.03712 1.02672 1.86486 1.23640 1.33312 1.84258 1.23236 0.91611 0.81560 0.72867 1.90711 1.66972 1.35735 1.43962 1.21596 0.89205 0.97864 1.06938 1.18587 0.80523 0.91218 0.94595 1.22472 1.02412 1.04395 0.94118 1.46071 1.05284 1.11023 1.76297 1.20240 0.89773 0.82669 0.75118 1.90680 1.66458 1.33872 1.46590 1.23285 0.93223 1.05122 1.05801 1.84805 1.07269 1.03240 1.96040 1.22310 0.88182 0.98535 1.57837 0.89379 1.24708 0.94184 0.99123 0.93286 1.69937 1.02476 1.31529 1.47739 0.86742 0.81251 0.83800 0.80103 1.19227 1.19943 1.15947 1.20699 0.98470 0.98525 0.94937 1.21346 0.91906 0.91176 0.99595 1.22082 1.02298 1.01495 0.93994 1.22648 0.93575 0.94002 0.96088 1.67628 1.09231 1.06758 1.36157 1.22370 0.97230 0.97835 0.88126 0.91772 0.91851 0.88084 0.86665 0.86278 0.90329 0.92134 0.89157 0.76404 0.88402 0.88509 0.91935 0.84900 0.85232 0.83286 0.83850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.28 16 2 O -0.36 -2.90 10.56 -39.25 -0.41 -3.32 16 3 C 0.47 4.22 7.35 36.00 0.26 4.49 16 4 O -0.49 -5.54 11.14 -18.75 -0.21 -5.75 16 5 C -0.12 -0.85 4.83 -27.89 -0.13 -0.99 16 6 C 0.24 2.53 0.62 -132.97 -0.08 2.45 16 7 C -0.18 -2.02 6.80 37.16 0.25 -1.77 16 8 N -0.73 -8.19 4.88 -48.69 -0.24 -8.43 16 9 C 0.54 8.79 7.25 -10.98 -0.08 8.72 16 10 O -0.50 -10.02 13.01 5.56 0.07 -9.95 16 11 C -0.12 -2.28 6.16 36.01 0.22 -2.06 16 12 S -0.14 -3.48 18.55 -107.50 -1.99 -5.47 16 13 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 14 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 15 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 16 N -0.88 -26.50 13.97 55.49 0.78 -25.72 16 17 Si 0.86 21.79 27.74 -169.99 -4.72 17.07 16 18 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 21 C -0.12 -1.61 2.31 -104.48 -0.24 -1.85 16 22 C -0.01 -0.19 7.30 -39.28 -0.29 -0.48 16 23 C -0.18 -2.29 10.11 -39.44 -0.40 -2.69 16 24 C 0.09 1.24 11.18 -17.55 -0.20 1.05 16 25 N -0.49 -7.28 10.36 -13.25 -0.14 -7.42 16 26 C 0.10 1.38 10.28 -17.55 -0.18 1.20 16 27 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 28 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.12 0.62 7.85 -51.93 -0.41 0.21 16 31 H 0.12 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.87 5.25 -51.93 -0.27 0.60 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 1.32 5.73 -51.93 -0.30 1.02 16 35 H 0.40 3.10 8.48 -40.82 -0.35 2.75 16 36 H 0.10 1.66 8.14 -51.92 -0.42 1.23 16 37 H 0.10 1.67 8.14 -51.91 -0.42 1.25 16 38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.13 1.74 6.06 -52.48 -0.32 1.43 16 40 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 42 H 0.14 1.63 7.93 -52.48 -0.42 1.21 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -36.54 362.17 -6.42 -42.96 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.44 Total: 3.06 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 0.42 Total: -2.50 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.40 Total: -41.57 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.55 Total: -19.01 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.72 Total: 17.07 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.54 -6.42 -42.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001540238523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.382 kcal (2) G-P(sol) polarization free energy of solvation -36.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds