Wall clock time and date at job start Tue Mar 31 2020 20:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34173 * 127.02214 * 2 1 4 4 O 1.34220 * 109.12296 * 180.02562 * 3 2 1 5 5 C 1.33651 * 110.90957 * 359.76032 * 4 3 2 6 6 C 1.36416 * 108.39502 * 0.39022 * 5 4 3 7 7 C 1.47377 * 127.19231 * 179.89795 * 6 5 4 8 8 O 1.21607 * 120.00385 * 179.67984 * 7 6 5 9 9 N 1.34783 * 119.99821 * 359.68006 * 7 6 5 10 10 C 1.47018 * 125.64872 * 0.03838 * 9 7 6 11 11 C 1.54371 * 107.28912 * 181.05671 * 10 9 7 12 12 C 1.55156 * 102.91644 * 22.14132 * 11 10 9 13 13 H 1.09000 * 111.00304 * 82.64318 * 12 11 10 14 14 N 1.46506 * 111.00157 * 206.44994 * 12 11 10 15 15 C 1.34771 * 119.99932 * 201.82242 * 14 12 11 16 16 O 1.21289 * 120.00201 * 0.02562 * 15 14 12 17 17 C 1.50704 * 120.00220 * 179.97438 * 15 14 12 18 18 S 1.80998 * 109.47205 * 179.97438 * 17 15 14 19 19 C 1.76204 * 99.99645 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00111 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99720 * 179.97438 * 19 18 17 22 22 N 1.31632 * 120.00093 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00020 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 90.00077 * 23 21 19 25 25 H 1.48503 * 109.47261 * 330.00257 * 23 21 19 26 26 H 1.48500 * 109.47454 * 210.00251 * 23 21 19 27 27 C 1.47424 * 125.64756 * 180.02562 * 9 7 6 28 28 H 1.09002 * 109.47333 * 269.97696 * 1 2 3 29 29 H 1.08995 * 109.47049 * 29.98041 * 1 2 3 30 30 H 1.09001 * 109.47053 * 149.97553 * 1 2 3 31 31 H 1.07998 * 125.44017 * 0.02562 * 3 2 1 32 32 H 1.07993 * 125.80171 * 180.27011 * 5 4 3 33 33 H 1.08994 * 109.88722 * 300.44590 * 10 9 7 34 34 H 1.09006 * 109.88049 * 61.45206 * 10 9 7 35 35 H 1.08995 * 110.70590 * 263.79978 * 11 10 9 36 36 H 1.09001 * 110.75409 * 140.51005 * 11 10 9 37 37 H 0.97002 * 119.99952 * 21.82070 * 14 12 11 38 38 H 1.09004 * 109.46909 * 59.99989 * 17 15 14 39 39 H 1.08994 * 109.46860 * 300.00327 * 17 15 14 40 40 H 0.96993 * 120.00092 * 359.97438 * 22 21 19 41 41 H 1.08999 * 110.36573 * 37.06438 * 27 9 7 42 42 H 1.09000 * 110.45470 * 274.79229 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5922 0.6587 -0.0006 5 6 3.6624 -0.6759 0.0043 6 6 2.3923 -1.1738 -0.0006 7 6 1.9914 -2.5920 0.0000 8 8 0.8125 -2.8907 0.0011 9 7 2.9313 -3.5580 -0.0007 10 6 4.3851 -3.3390 -0.0012 11 6 5.0583 -4.7279 -0.0290 12 6 3.9471 -5.6402 -0.6125 13 1 3.9270 -5.5841 -1.7009 14 7 4.1153 -7.0248 -0.1640 15 6 3.5625 -8.0328 -0.8675 16 8 2.9263 -7.7937 -1.8720 17 6 3.7359 -9.4571 -0.4065 18 16 2.8832 -10.5698 -1.5514 19 6 3.2392 -12.1201 -0.7934 20 1 3.8288 -12.1564 0.1108 21 6 2.7611 -13.2946 -1.3578 22 7 2.0422 -13.2503 -2.4596 23 14 3.1380 -14.9381 -0.5539 24 1 2.0707 -15.2667 0.4250 25 1 4.4448 -14.8584 0.1468 26 1 3.1980 -15.9960 -1.5944 27 6 2.6718 -5.0093 -0.0007 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.9895 2.1010 0.0004 32 1 4.5702 -1.2608 0.0091 33 1 4.6740 -2.7700 -0.8847 34 1 4.6790 -2.7996 0.8994 35 1 5.3286 -5.0454 0.9780 36 1 5.9325 -4.7204 -0.6799 37 1 4.6244 -7.2160 0.6392 38 1 3.3131 -9.5699 0.5918 39 1 4.7972 -9.7042 -0.3817 40 1 1.8462 -12.3969 -2.8768 41 1 1.8021 -5.2391 -0.6162 42 1 2.5214 -5.3694 1.0170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576211310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:16 Heat of formation + Delta-G solvation = -51.812923 kcal Electronic energy + Delta-G solvation = -25771.349334 eV Core-core repulsion = 21844.538459 eV Total energy + Delta-G solvation = -3926.810875 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.98979 -40.47155 -39.21332 -37.55825 -34.43205 -34.17351 -32.55046 -31.82360 -30.79780 -29.72293 -28.00106 -27.57879 -25.11287 -24.79408 -22.54265 -21.90311 -20.91372 -20.57012 -19.78485 -18.41556 -17.89394 -17.14478 -16.69916 -16.62455 -16.40130 -15.89412 -15.40415 -15.14070 -14.62522 -14.43891 -14.30483 -13.95182 -13.86303 -13.63868 -13.41967 -13.37004 -13.14082 -13.02116 -12.87519 -12.43274 -12.30385 -12.21391 -11.86244 -11.81101 -11.73563 -11.28911 -10.92532 -10.27788 -10.20652 -9.92871 -9.65456 -9.59986 -9.26611 -9.10212 -9.03424 -8.97208 -8.25384 -6.70180 -6.64281 -4.02752 0.93982 1.64018 2.33531 2.56297 2.84973 2.90675 3.01776 3.33063 3.37784 3.47591 3.55203 3.92550 4.03920 4.11341 4.22709 4.30709 4.41079 4.52790 4.74902 4.80844 4.86542 4.94034 5.00840 5.03024 5.20366 5.27780 5.38706 5.39933 5.41334 5.43464 5.56102 5.65232 5.68082 5.71060 5.76567 5.86614 5.95849 6.11716 6.39428 6.54243 7.10211 7.46630 7.86563 7.89848 8.38562 8.47971 9.24720 10.79668 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.031756 B = 0.001867 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.511453 B =14993.228239 C =15528.357243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.131 4.131 3 C -0.047 4.047 4 O -0.173 6.173 5 C 0.008 3.992 6 C -0.228 4.228 7 C 0.601 3.399 8 O -0.526 6.526 9 N -0.615 5.615 10 C 0.091 3.909 11 C -0.138 4.138 12 C 0.137 3.863 13 H 0.107 0.893 14 N -0.728 5.728 15 C 0.532 3.468 16 O -0.511 6.511 17 C -0.131 4.131 18 S -0.115 6.115 19 C -0.608 4.608 20 H 0.066 0.934 21 C 0.035 3.965 22 N -0.884 5.884 23 Si 1.087 2.913 24 H -0.284 1.284 25 H -0.287 1.287 26 H -0.280 1.280 27 C 0.096 3.904 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.208 0.792 32 H 0.219 0.781 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.402 0.598 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.278 0.722 41 H 0.089 0.911 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.291 29.204 8.894 31.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C -0.113 4.113 4 O -0.068 6.068 5 C -0.062 4.062 6 C -0.233 4.233 7 C 0.391 3.609 8 O -0.403 6.403 9 N -0.350 5.350 10 C -0.033 4.033 11 C -0.176 4.176 12 C 0.030 3.970 13 H 0.125 0.875 14 N -0.382 5.382 15 C 0.318 3.682 16 O -0.385 6.385 17 C -0.282 4.282 18 S 0.111 5.889 19 C -0.756 4.756 20 H 0.085 0.915 21 C -0.176 4.176 22 N -0.518 5.518 23 Si 0.913 3.087 24 H -0.210 1.210 25 H -0.213 1.213 26 H -0.205 1.205 27 C -0.028 4.028 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.225 0.775 32 H 0.235 0.765 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.237 0.763 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.495 28.066 7.039 29.655 hybrid contribution 1.303 1.120 1.936 2.588 sum 7.798 29.186 8.974 31.514 Atomic orbital electron populations 1.20259 0.88187 1.03380 1.02688 1.21442 0.97392 0.90229 1.04212 1.23749 0.79673 0.99744 1.08130 1.83807 1.29674 1.22428 1.70846 1.25217 0.99342 0.81094 1.00558 1.21340 0.93503 0.93909 1.14553 1.16882 0.84538 0.83106 0.76337 1.90808 1.16711 1.82869 1.49881 1.48166 1.06069 1.06669 1.74094 1.22352 0.80694 0.98380 1.01827 1.22954 0.98383 0.93202 1.03073 1.21953 0.93228 0.81140 1.00672 0.87485 1.45843 1.57117 1.04839 1.30406 1.20380 0.77994 0.86592 0.83184 1.90731 1.38607 1.84494 1.24636 1.23314 1.05593 0.94075 1.05233 1.84867 1.69167 1.00050 1.34795 1.23724 1.43368 0.92301 1.16224 0.91537 1.26066 0.93350 1.02647 0.95502 1.70769 1.33764 1.29960 1.17278 0.83284 0.76048 0.73871 0.75459 1.21041 1.21300 1.20494 1.22690 0.99709 0.78381 1.01978 0.91103 0.91587 0.89840 0.77537 0.76507 0.90478 0.90464 0.89442 0.88666 0.76336 0.88807 0.88806 0.90940 0.89228 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 10.00 36.01 0.36 -0.42 16 2 C -0.13 -1.23 6.37 -102.49 -0.65 -1.89 16 3 C -0.05 -0.33 11.96 29.30 0.35 0.02 16 4 O -0.17 -1.28 10.52 7.64 0.08 -1.20 16 5 C 0.01 0.06 10.63 30.08 0.32 0.37 16 6 C -0.23 -2.33 6.28 -103.28 -0.65 -2.98 16 7 C 0.60 7.65 7.84 -12.54 -0.10 7.55 16 8 O -0.53 -8.72 15.66 5.27 0.08 -8.64 16 9 N -0.61 -6.30 3.33 -171.79 -0.57 -6.88 16 10 C 0.09 0.51 5.01 -3.04 -0.02 0.49 16 11 C -0.14 -0.75 6.59 -24.87 -0.16 -0.92 16 12 C 0.14 1.39 3.37 -65.79 -0.22 1.17 16 13 H 0.11 1.31 7.63 -51.93 -0.40 0.91 16 14 N -0.73 -8.38 5.21 -51.74 -0.27 -8.65 16 15 C 0.53 9.24 7.85 -10.99 -0.09 9.16 16 16 O -0.51 -11.08 15.55 5.55 0.09 -10.99 16 17 C -0.13 -2.53 6.16 36.01 0.22 -2.31 16 18 S -0.12 -3.06 19.60 -107.50 -2.11 -5.16 16 19 C -0.61 -17.35 9.50 30.94 0.29 -17.06 16 20 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 21 C 0.03 1.01 5.49 -17.43 -0.10 0.92 16 22 N -0.88 -27.44 13.67 55.49 0.76 -26.68 16 23 Si 1.09 24.84 29.92 -169.99 -5.09 19.75 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 25 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 27 C 0.10 1.13 6.60 -2.54 -0.02 1.11 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.94 6.92 -51.93 -0.36 0.58 16 31 H 0.21 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.22 0.75 4.45 -52.49 -0.23 0.52 16 33 H 0.08 0.32 6.90 -51.93 -0.36 -0.04 16 34 H 0.08 0.27 7.02 -51.93 -0.36 -0.09 16 35 H 0.09 0.36 8.00 -51.93 -0.42 -0.06 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.40 3.32 8.54 -40.82 -0.35 2.97 16 38 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 39 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 40 H 0.28 8.83 7.12 -40.82 -0.29 8.53 16 41 H 0.09 1.35 8.04 -51.93 -0.42 0.93 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 367.78 15.07 5.54 5.54 Total: -1.00 -38.96 367.78 -7.29 -46.25 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.35 Total: 1.43 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -0.45 Total: -4.78 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: -0.08 Total: -42.20 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: 0.25 Total: -20.83 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.09 Total: 19.75 kcal Atomic # 16 Polarization: -3.06 SS G_CDS: -2.11 Total: -5.16 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.96 -7.29 -46.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576211310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.566 kcal (2) G-P(sol) polarization free energy of solvation -38.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds