Wall clock time and date at job start Tue Mar 31 2020 20:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34173 * 127.02214 * 2 1 4 4 O 1.34220 * 109.12296 * 180.02562 * 3 2 1 5 5 C 1.33651 * 110.90957 * 359.76032 * 4 3 2 6 6 C 1.36416 * 108.39502 * 0.39022 * 5 4 3 7 7 C 1.47377 * 127.19231 * 179.89795 * 6 5 4 8 8 O 1.21607 * 120.00385 * 179.67984 * 7 6 5 9 9 N 1.34783 * 119.99821 * 359.68006 * 7 6 5 10 10 C 1.47018 * 125.64872 * 0.03838 * 9 7 6 11 11 C 1.54371 * 107.28912 * 181.05671 * 10 9 7 12 12 C 1.55156 * 102.91644 * 22.14132 * 11 10 9 13 13 H 1.09000 * 111.00304 * 82.64318 * 12 11 10 14 14 N 1.46506 * 111.00157 * 206.44994 * 12 11 10 15 15 C 1.34771 * 119.99932 * 201.82242 * 14 12 11 16 16 O 1.21289 * 120.00201 * 0.02562 * 15 14 12 17 17 C 1.50704 * 120.00220 * 179.97438 * 15 14 12 18 18 S 1.80998 * 109.47205 * 179.97438 * 17 15 14 19 19 C 1.76204 * 99.99645 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00111 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99720 * 179.97438 * 19 18 17 22 22 N 1.31632 * 120.00093 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00020 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 90.00077 * 23 21 19 25 25 H 1.48503 * 109.47261 * 330.00257 * 23 21 19 26 26 H 1.48500 * 109.47454 * 210.00251 * 23 21 19 27 27 C 1.47424 * 125.64756 * 180.02562 * 9 7 6 28 28 H 1.09002 * 109.47333 * 269.97696 * 1 2 3 29 29 H 1.08995 * 109.47049 * 29.98041 * 1 2 3 30 30 H 1.09001 * 109.47053 * 149.97553 * 1 2 3 31 31 H 1.07998 * 125.44017 * 0.02562 * 3 2 1 32 32 H 1.07993 * 125.80171 * 180.27011 * 5 4 3 33 33 H 1.08994 * 109.88722 * 300.44590 * 10 9 7 34 34 H 1.09006 * 109.88049 * 61.45206 * 10 9 7 35 35 H 1.08995 * 110.70590 * 263.79978 * 11 10 9 36 36 H 1.09001 * 110.75409 * 140.51005 * 11 10 9 37 37 H 0.97002 * 119.99952 * 21.82070 * 14 12 11 38 38 H 1.09004 * 109.46909 * 59.99989 * 17 15 14 39 39 H 1.08994 * 109.46860 * 300.00327 * 17 15 14 40 40 H 0.96993 * 120.00092 * 359.97438 * 22 21 19 41 41 H 1.08999 * 110.36573 * 37.06438 * 27 9 7 42 42 H 1.09000 * 110.45470 * 274.79229 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5922 0.6587 -0.0006 5 6 3.6624 -0.6759 0.0043 6 6 2.3923 -1.1738 -0.0006 7 6 1.9914 -2.5920 0.0000 8 8 0.8125 -2.8907 0.0011 9 7 2.9313 -3.5580 -0.0007 10 6 4.3851 -3.3390 -0.0012 11 6 5.0583 -4.7279 -0.0290 12 6 3.9471 -5.6402 -0.6125 13 1 3.9270 -5.5841 -1.7009 14 7 4.1153 -7.0248 -0.1640 15 6 3.5625 -8.0328 -0.8675 16 8 2.9263 -7.7937 -1.8720 17 6 3.7359 -9.4571 -0.4065 18 16 2.8832 -10.5698 -1.5514 19 6 3.2392 -12.1201 -0.7934 20 1 3.8288 -12.1564 0.1108 21 6 2.7611 -13.2946 -1.3578 22 7 2.0422 -13.2503 -2.4596 23 14 3.1380 -14.9381 -0.5539 24 1 2.0707 -15.2667 0.4250 25 1 4.4448 -14.8584 0.1468 26 1 3.1980 -15.9960 -1.5944 27 6 2.6718 -5.0093 -0.0007 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.9895 2.1010 0.0004 32 1 4.5702 -1.2608 0.0091 33 1 4.6740 -2.7700 -0.8847 34 1 4.6790 -2.7996 0.8994 35 1 5.3286 -5.0454 0.9780 36 1 5.9325 -4.7204 -0.6799 37 1 4.6244 -7.2160 0.6392 38 1 3.3131 -9.5699 0.5918 39 1 4.7972 -9.7042 -0.3817 40 1 1.8462 -12.3969 -2.8768 41 1 1.8021 -5.2391 -0.6162 42 1 2.5214 -5.3694 1.0170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576211310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:15 Heat of formation + Delta-G solvation = -81.620002 kcal Electronic energy + Delta-G solvation = -25772.641866 eV Core-core repulsion = 21844.538459 eV Total energy + Delta-G solvation = -3928.103407 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.57885 -41.41265 -40.43833 -38.54907 -35.55585 -34.83279 -34.74911 -32.76413 -31.52856 -30.87012 -29.01987 -28.20198 -27.08677 -25.81108 -23.22671 -22.72543 -21.82590 -21.55666 -20.56020 -20.39215 -18.68327 -18.18778 -17.75226 -17.39305 -17.19014 -16.98018 -16.62630 -16.37864 -15.92265 -15.67839 -15.36351 -15.05997 -14.96912 -14.60760 -14.47829 -14.35291 -14.17278 -14.03325 -13.93928 -13.82565 -13.59164 -13.48986 -12.75384 -12.73624 -12.66394 -12.46336 -11.94548 -11.93598 -11.55714 -11.26931 -11.11483 -11.10993 -10.64348 -10.36512 -10.32363 -9.83446 -9.66237 -8.92809 -8.87709 -6.28155 0.28643 1.02275 1.15707 1.42948 1.51379 1.61194 1.63185 1.79472 2.01617 2.17547 2.25882 2.35282 3.02234 3.12584 3.23745 3.40362 3.55184 3.63229 3.83675 3.90545 3.93680 4.07811 4.16230 4.18712 4.28103 4.38145 4.41346 4.47946 4.59495 4.68829 4.73384 4.80982 4.94657 4.98695 5.00023 5.02422 5.09394 5.37099 5.44451 5.64553 5.95849 6.14222 6.30111 6.38489 6.97383 7.06017 7.11933 8.50603 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.031756 B = 0.001867 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.511453 B =14993.228239 C =15528.357243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.170 4.170 3 C -0.026 4.026 4 O -0.171 6.171 5 C 0.039 3.961 6 C -0.267 4.267 7 C 0.591 3.409 8 O -0.586 6.586 9 N -0.613 5.613 10 C 0.079 3.921 11 C -0.119 4.119 12 C 0.135 3.865 13 H 0.084 0.916 14 N -0.697 5.697 15 C 0.535 3.465 16 O -0.564 6.564 17 C -0.108 4.108 18 S -0.202 6.202 19 C -0.611 4.611 20 H 0.077 0.923 21 C -0.021 4.021 22 N -0.915 5.915 23 Si 1.140 2.860 24 H -0.269 1.269 25 H -0.260 1.260 26 H -0.280 1.280 27 C 0.097 3.903 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.245 0.755 32 H 0.256 0.744 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.424 0.576 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.260 0.740 41 H 0.040 0.960 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.312 31.168 11.396 35.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.172 4.172 3 C -0.092 4.092 4 O -0.065 6.065 5 C -0.031 4.031 6 C -0.272 4.272 7 C 0.383 3.617 8 O -0.468 6.468 9 N -0.346 5.346 10 C -0.042 4.042 11 C -0.156 4.156 12 C 0.029 3.971 13 H 0.102 0.898 14 N -0.351 5.351 15 C 0.320 3.680 16 O -0.441 6.441 17 C -0.260 4.260 18 S 0.025 5.975 19 C -0.759 4.759 20 H 0.096 0.904 21 C -0.224 4.224 22 N -0.550 5.550 23 Si 0.957 3.043 24 H -0.195 1.195 25 H -0.184 1.184 26 H -0.205 1.205 27 C -0.028 4.028 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.261 0.739 32 H 0.272 0.728 33 H 0.117 0.883 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.262 0.738 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.605 30.089 9.596 33.315 hybrid contribution 0.096 0.673 1.199 1.379 sum 10.701 30.763 10.795 34.313 Atomic orbital electron populations 1.20170 0.88764 1.02772 1.02372 1.21678 0.97696 0.91205 1.06630 1.24338 0.78869 1.00548 1.05432 1.83860 1.29808 1.22465 1.70351 1.25777 0.99135 0.80978 0.97205 1.21311 0.95461 0.92586 1.17842 1.17415 0.84139 0.84562 0.75554 1.90767 1.19246 1.83869 1.52873 1.48215 1.08113 1.05365 1.72910 1.22807 0.77367 0.99357 1.04639 1.23003 0.96943 0.90988 1.04699 1.22007 0.94841 0.80635 0.99664 0.89803 1.45501 1.55237 1.04335 1.30035 1.20109 0.77943 0.86944 0.82953 1.90728 1.41217 1.85046 1.27146 1.23222 1.05845 0.93378 1.03548 1.85154 1.71392 1.02370 1.38599 1.24054 1.42758 0.92809 1.16253 0.90432 1.27859 0.92356 1.07056 0.95164 1.70890 1.36120 1.28938 1.19047 0.82680 0.77500 0.69145 0.74947 1.19473 1.18393 1.20541 1.22519 0.98885 0.80167 1.01219 0.91361 0.89109 0.93422 0.73872 0.72837 0.88264 0.86942 0.86798 0.86037 0.73754 0.86898 0.86345 0.92893 0.94138 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 10.00 71.24 0.71 -0.86 16 2 C -0.17 -3.12 6.37 -18.49 -0.12 -3.24 16 3 C -0.03 -0.29 11.96 66.89 0.80 0.51 16 4 O -0.17 -1.89 10.52 4.44 0.05 -1.85 16 5 C 0.04 0.42 10.63 67.39 0.72 1.13 16 6 C -0.27 -5.26 6.28 -18.99 -0.12 -5.38 16 7 C 0.59 15.68 7.84 86.65 0.68 16.36 16 8 O -0.59 -21.52 15.66 -4.05 -0.06 -21.59 16 9 N -0.61 -12.22 3.33 -815.68 -2.71 -14.93 16 10 C 0.08 0.57 5.01 86.75 0.43 1.00 16 11 C -0.12 -0.75 6.59 31.80 0.21 -0.54 16 12 C 0.14 2.56 3.37 46.37 0.16 2.72 16 13 H 0.08 2.06 7.63 -2.39 -0.02 2.04 16 14 N -0.70 -14.70 5.21 -435.99 -2.27 -16.97 16 15 C 0.53 18.46 7.85 87.66 0.69 19.15 16 16 O -0.56 -25.53 15.55 -3.06 -0.05 -25.57 16 17 C -0.11 -4.09 6.16 71.24 0.44 -3.65 16 18 S -0.20 -11.05 19.60 -56.49 -1.11 -12.16 16 19 C -0.61 -34.97 9.50 67.95 0.65 -34.33 16 20 H 0.08 4.12 7.80 -2.91 -0.02 4.10 16 21 C -0.02 -1.24 5.49 84.86 0.47 -0.78 16 22 N -0.91 -58.47 13.67 21.65 0.30 -58.17 16 23 Si 1.14 49.21 29.92 68.60 2.05 51.26 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 25 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 26 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 27 C 0.10 2.34 6.60 86.85 0.57 2.91 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.22 6.92 -2.39 -0.02 1.21 16 31 H 0.25 0.58 8.06 -2.91 -0.02 0.55 16 32 H 0.26 0.36 4.45 -2.91 -0.01 0.35 16 33 H 0.10 0.34 6.90 -2.39 -0.02 0.32 16 34 H 0.11 0.12 7.02 -2.38 -0.02 0.11 16 35 H 0.11 0.22 8.00 -2.39 -0.02 0.20 16 36 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.42 5.37 8.54 -92.71 -0.79 4.58 16 38 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 39 H 0.12 3.89 8.14 -2.40 -0.02 3.87 16 40 H 0.26 17.34 7.12 -92.71 -0.66 16.68 16 41 H 0.04 1.36 8.04 -2.39 -0.02 1.34 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -95.10 367.78 2.86 -92.24 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.39 Total: 12.73 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 6.28 Total: -5.00 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -4.69 Total: -90.07 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: -0.06 Total: -49.01 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 2.05 Total: 51.26 kcal Atomic # 16 Polarization: -11.05 SS G_CDS: -1.11 Total: -12.16 kcal Total: -95.10 2.86 -92.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576211310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.624 kcal (2) G-P(sol) polarization free energy of solvation -95.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds