Wall clock time and date at job start Tue Mar 31 2020 20:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35131 * 126.44029 * 2 1 4 4 O 1.33935 * 108.76625 * 179.76711 * 3 2 1 5 5 C 1.34912 * 109.38264 * 0.38293 * 4 3 2 6 6 C 1.46662 * 125.98623 * 179.87960 * 5 4 3 7 7 O 1.21694 * 119.99794 * 179.69004 * 6 5 4 8 8 N 1.34772 * 119.99842 * 359.69925 * 6 5 4 9 9 C 1.46504 * 119.99740 * 179.97438 * 8 6 5 10 10 H 1.08998 * 110.91599 * 37.44825 * 9 8 6 11 11 C 1.55158 * 111.00258 * 161.34484 * 9 8 6 12 12 C 1.54340 * 103.02056 * 153.38004 * 11 9 8 13 13 N 1.47021 * 107.26360 * 338.14333 * 12 11 9 14 14 C 1.34778 * 125.64597 * 178.85217 * 13 12 11 15 15 O 1.21278 * 119.99748 * 179.68858 * 14 13 12 16 16 C 1.50697 * 120.00209 * 359.68671 * 14 13 12 17 17 S 1.80999 * 109.47181 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99825 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00405 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99855 * 179.72221 * 18 17 16 21 21 N 1.31634 * 119.99756 * 0.27728 * 20 18 17 22 22 Si 1.86803 * 120.00005 * 180.27923 * 20 18 17 23 23 H 1.48496 * 109.47187 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 119.99999 * 22 20 18 25 25 H 1.48498 * 109.47018 * 240.00046 * 22 20 18 26 26 C 1.47426 * 108.70439 * 358.58153 * 13 12 11 27 27 C 1.36543 * 108.02657 * 359.62082 * 5 4 3 28 28 H 1.09000 * 109.47498 * 270.00023 * 1 2 3 29 29 H 1.09003 * 109.46914 * 29.99747 * 1 2 3 30 30 H 1.08994 * 109.46924 * 149.99846 * 1 2 3 31 31 H 1.08004 * 125.62073 * 359.97438 * 3 2 1 32 32 H 0.97004 * 120.00308 * 359.97438 * 8 6 5 33 33 H 1.09002 * 110.72451 * 271.93722 * 11 9 8 34 34 H 1.09006 * 110.72264 * 35.21303 * 11 9 8 35 35 H 1.08996 * 109.98931 * 218.66496 * 12 11 9 36 36 H 1.09003 * 109.77829 * 97.49290 * 12 11 9 37 37 H 1.08999 * 109.47278 * 59.99800 * 16 14 13 38 38 H 1.09002 * 109.46837 * 300.00183 * 16 14 13 39 39 H 0.97000 * 119.99219 * 179.97438 * 21 20 18 40 40 H 1.09000 * 110.36487 * 143.19330 * 26 13 12 41 41 H 1.08996 * 110.36717 * 265.51803 * 26 13 12 42 42 H 1.07994 * 126.64479 * 180.19248 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0871 0.0000 4 8 3.5857 0.6805 0.0052 5 6 3.6260 -0.6680 0.0000 6 6 4.8379 -1.4940 0.0007 7 8 4.7471 -2.7076 0.0014 8 7 6.0520 -0.9090 0.0007 9 6 7.2626 -1.7342 0.0020 10 1 7.1292 -2.6218 -0.6164 11 6 8.4953 -0.9137 -0.4615 12 6 9.6725 -1.6351 0.2282 13 7 9.1207 -2.3744 1.3730 14 6 9.8251 -3.1517 2.2193 15 8 9.2642 -3.7124 3.1368 16 6 11.3095 -3.3242 2.0254 17 16 11.9630 -4.4176 3.3113 18 6 13.6648 -4.4430 2.8555 19 1 14.0029 -3.8792 1.9987 20 6 14.5720 -5.1827 3.6015 21 7 14.1600 -5.8695 4.6461 22 14 16.3776 -5.2035 3.1229 23 1 16.5806 -4.3570 1.9198 24 1 17.1932 -4.6736 4.2450 25 1 16.7942 -6.5969 2.8230 26 6 7.6705 -2.1194 1.4459 27 6 2.3408 -1.1291 0.0000 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 1.9770 2.1146 -0.0004 32 1 6.1244 0.0583 -0.0001 33 1 8.5986 -0.9521 -1.5460 34 1 8.4242 0.1177 -0.1161 35 1 10.4043 -0.9059 0.5757 36 1 10.1403 -2.3289 -0.4703 37 1 11.7998 -2.3528 2.0903 38 1 11.4995 -3.7623 1.0455 39 1 14.7941 -6.3867 5.1671 40 1 7.1426 -3.0192 1.7618 41 1 7.4639 -1.2971 2.1307 42 1 2.0267 -2.1624 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578057180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:37 Heat of formation + Delta-G solvation = -52.868113 kcal Electronic energy + Delta-G solvation = -25427.452105 eV Core-core repulsion = 21500.595473 eV Total energy + Delta-G solvation = -3926.856632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.15690 -40.38374 -39.26708 -37.29663 -34.92352 -34.34917 -32.42277 -31.50017 -30.67212 -29.70929 -28.23974 -27.46997 -25.49474 -24.34925 -23.15392 -21.58181 -21.37536 -20.42080 -19.37354 -18.41098 -17.70679 -17.10989 -16.81434 -16.75375 -16.48258 -15.55297 -15.29945 -14.80433 -14.74767 -14.47444 -14.21296 -13.99872 -13.80544 -13.66397 -13.63595 -13.46631 -13.10944 -13.01798 -12.67474 -12.55082 -12.21413 -12.03146 -11.92956 -11.74882 -11.18505 -11.06495 -11.00921 -10.76655 -10.69191 -10.17652 -9.81874 -9.68000 -9.39566 -9.06783 -9.04469 -8.53896 -8.22071 -6.49589 -6.21038 -3.91706 0.61788 1.83911 2.18132 2.59774 2.76919 3.00823 3.07131 3.22069 3.27315 3.31927 3.62139 4.03059 4.20038 4.22762 4.29191 4.33837 4.47862 4.61241 4.83424 4.92062 5.03994 5.06485 5.12856 5.14170 5.16714 5.32702 5.36916 5.45614 5.47088 5.50253 5.59087 5.62459 5.66625 5.80142 5.92340 5.93030 5.96525 6.13574 6.34284 6.39184 7.00127 7.60063 7.62594 7.65453 8.35992 8.54427 9.24233 10.86473 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.037697 B = 0.001765 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.594692 B =15858.407430 C =16277.923496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.193 4.193 3 C -0.008 4.008 4 O -0.163 6.163 5 C -0.077 4.077 6 C 0.605 3.395 7 O -0.510 6.510 8 N -0.710 5.710 9 C 0.132 3.868 10 H 0.110 0.890 11 C -0.136 4.136 12 C 0.104 3.896 13 N -0.626 5.626 14 C 0.549 3.451 15 O -0.512 6.512 16 C -0.146 4.146 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.098 3.902 27 C -0.114 4.114 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.210 0.790 32 H 0.408 0.592 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.268 0.732 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.630 18.567 -14.817 33.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.195 4.195 3 C -0.078 4.078 4 O -0.059 6.059 5 C -0.129 4.129 6 C 0.391 3.609 7 O -0.386 6.386 8 N -0.361 5.361 9 C 0.026 3.974 10 H 0.128 0.872 11 C -0.174 4.174 12 C -0.019 4.019 13 N -0.364 5.364 14 C 0.338 3.662 15 O -0.385 6.385 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.746 3.254 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.026 4.026 27 C -0.135 4.135 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.227 0.773 32 H 0.243 0.757 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -24.131 16.839 -13.239 32.266 hybrid contribution 1.674 1.191 -1.346 2.457 sum -22.457 18.030 -14.585 32.282 Atomic orbital electron populations 1.20200 0.88489 1.02963 1.02520 1.20523 0.97854 0.92367 1.08730 1.24226 0.79838 1.00104 1.03630 1.84045 1.29445 1.21609 1.70751 1.21980 0.96040 0.80581 1.14334 1.16558 0.81223 0.86450 0.76684 1.90943 1.85825 1.12170 1.49693 1.45733 1.04829 1.10598 1.74942 1.22185 0.83011 0.95011 0.97144 0.87240 1.22932 0.93158 0.99615 1.01708 1.21967 0.96069 0.95673 0.88237 1.48401 1.07994 1.49538 1.30511 1.20059 0.88698 0.76935 0.80544 1.90722 1.71265 1.45986 1.30557 1.23505 0.93215 1.05963 1.06982 1.85442 1.06020 1.58224 1.33731 1.22902 0.92881 1.35344 1.17179 0.90853 1.25000 0.99494 0.94583 0.94523 1.70035 1.35164 1.28548 1.16486 0.86108 0.82793 0.78051 0.78484 1.19620 1.20574 1.20561 1.22477 0.81988 1.02285 0.95889 1.21898 0.90527 1.00761 1.00302 0.91104 0.91382 0.91163 0.77350 0.75687 0.88962 0.89785 0.90659 0.90690 0.89240 0.89175 0.92228 0.89589 0.91423 0.82133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.39 36.00 0.37 0.02 16 2 C -0.19 -1.28 6.14 -104.93 -0.64 -1.92 16 3 C -0.01 -0.05 12.00 29.63 0.36 0.31 16 4 O -0.16 -1.24 10.40 4.99 0.05 -1.18 16 5 C -0.08 -0.73 7.13 -36.79 -0.26 -0.99 16 6 C 0.60 6.58 7.78 -12.86 -0.10 6.48 16 7 O -0.51 -7.38 16.61 5.19 0.09 -7.30 16 8 N -0.71 -5.93 5.23 -53.04 -0.28 -6.21 16 9 C 0.13 1.25 3.32 -65.78 -0.22 1.03 16 10 H 0.11 1.18 7.73 -51.93 -0.40 0.78 16 11 C -0.14 -0.92 6.57 -24.89 -0.16 -1.09 16 12 C 0.10 1.04 6.49 -3.06 -0.02 1.02 16 13 N -0.63 -9.19 3.33 -170.51 -0.57 -9.75 16 14 C 0.55 10.90 7.87 -10.99 -0.09 10.81 16 15 O -0.51 -12.35 16.12 5.56 0.09 -12.26 16 16 C -0.15 -3.02 5.35 36.00 0.19 -2.83 16 17 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 18 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 19 H 0.07 1.98 7.80 -52.49 -0.41 1.58 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.34 13.22 55.49 0.73 -25.60 16 22 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.10 1.28 6.60 -2.53 -0.02 1.26 16 27 C -0.11 -1.01 10.57 -39.39 -0.42 -1.42 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.21 0.32 8.06 -52.48 -0.42 -0.11 16 32 H 0.41 2.37 8.27 -40.82 -0.34 2.03 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.44 8.00 -51.93 -0.42 0.02 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 38 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.09 1.35 8.04 -51.93 -0.42 0.94 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.16 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -37.77 379.09 -7.98 -45.75 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -5.77 Total: -1.37 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -0.81 Total: -0.34 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: -0.11 Total: -41.56 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.23 Total: -20.74 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.77 -7.98 -45.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578057180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.115 kcal (2) G-P(sol) polarization free energy of solvation -37.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds