Wall clock time and date at job start Tue Mar 31 2020 20:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35131 * 126.44029 * 2 1 4 4 O 1.33935 * 108.76625 * 179.76711 * 3 2 1 5 5 C 1.34912 * 109.38264 * 0.38293 * 4 3 2 6 6 C 1.46662 * 125.98623 * 179.87960 * 5 4 3 7 7 O 1.21694 * 119.99794 * 179.69004 * 6 5 4 8 8 N 1.34772 * 119.99842 * 359.69925 * 6 5 4 9 9 C 1.46504 * 119.99740 * 179.97438 * 8 6 5 10 10 H 1.08998 * 110.91599 * 37.44825 * 9 8 6 11 11 C 1.55158 * 111.00258 * 161.34484 * 9 8 6 12 12 C 1.54340 * 103.02056 * 153.38004 * 11 9 8 13 13 N 1.47021 * 107.26360 * 338.14333 * 12 11 9 14 14 C 1.34778 * 125.64597 * 178.85217 * 13 12 11 15 15 O 1.21278 * 119.99748 * 179.68858 * 14 13 12 16 16 C 1.50697 * 120.00209 * 359.68671 * 14 13 12 17 17 S 1.80999 * 109.47181 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99825 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00405 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99855 * 179.72221 * 18 17 16 21 21 N 1.31634 * 119.99756 * 0.27728 * 20 18 17 22 22 Si 1.86803 * 120.00005 * 180.27923 * 20 18 17 23 23 H 1.48496 * 109.47187 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 119.99999 * 22 20 18 25 25 H 1.48498 * 109.47018 * 240.00046 * 22 20 18 26 26 C 1.47426 * 108.70439 * 358.58153 * 13 12 11 27 27 C 1.36543 * 108.02657 * 359.62082 * 5 4 3 28 28 H 1.09000 * 109.47498 * 270.00023 * 1 2 3 29 29 H 1.09003 * 109.46914 * 29.99747 * 1 2 3 30 30 H 1.08994 * 109.46924 * 149.99846 * 1 2 3 31 31 H 1.08004 * 125.62073 * 359.97438 * 3 2 1 32 32 H 0.97004 * 120.00308 * 359.97438 * 8 6 5 33 33 H 1.09002 * 110.72451 * 271.93722 * 11 9 8 34 34 H 1.09006 * 110.72264 * 35.21303 * 11 9 8 35 35 H 1.08996 * 109.98931 * 218.66496 * 12 11 9 36 36 H 1.09003 * 109.77829 * 97.49290 * 12 11 9 37 37 H 1.08999 * 109.47278 * 59.99800 * 16 14 13 38 38 H 1.09002 * 109.46837 * 300.00183 * 16 14 13 39 39 H 0.97000 * 119.99219 * 179.97438 * 21 20 18 40 40 H 1.09000 * 110.36487 * 143.19330 * 26 13 12 41 41 H 1.08996 * 110.36717 * 265.51803 * 26 13 12 42 42 H 1.07994 * 126.64479 * 180.19248 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0871 0.0000 4 8 3.5857 0.6805 0.0052 5 6 3.6260 -0.6680 0.0000 6 6 4.8379 -1.4940 0.0007 7 8 4.7471 -2.7076 0.0014 8 7 6.0520 -0.9090 0.0007 9 6 7.2626 -1.7342 0.0020 10 1 7.1292 -2.6218 -0.6164 11 6 8.4953 -0.9137 -0.4615 12 6 9.6725 -1.6351 0.2282 13 7 9.1207 -2.3744 1.3730 14 6 9.8251 -3.1517 2.2193 15 8 9.2642 -3.7124 3.1368 16 6 11.3095 -3.3242 2.0254 17 16 11.9630 -4.4176 3.3113 18 6 13.6648 -4.4430 2.8555 19 1 14.0029 -3.8792 1.9987 20 6 14.5720 -5.1827 3.6015 21 7 14.1600 -5.8695 4.6461 22 14 16.3776 -5.2035 3.1229 23 1 16.5806 -4.3570 1.9198 24 1 17.1932 -4.6736 4.2450 25 1 16.7942 -6.5969 2.8230 26 6 7.6705 -2.1194 1.4459 27 6 2.3408 -1.1291 0.0000 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 1.9770 2.1146 -0.0004 32 1 6.1244 0.0583 -0.0001 33 1 8.5986 -0.9521 -1.5460 34 1 8.4242 0.1177 -0.1161 35 1 10.4043 -0.9059 0.5757 36 1 10.1403 -2.3289 -0.4703 37 1 11.7998 -2.3528 2.0903 38 1 11.4995 -3.7623 1.0455 39 1 14.7941 -6.3867 5.1671 40 1 7.1426 -3.0192 1.7618 41 1 7.4639 -1.2971 2.1307 42 1 2.0267 -2.1624 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578057180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:36 Heat of formation + Delta-G solvation = -80.611016 kcal Electronic energy + Delta-G solvation = -25428.655127 eV Core-core repulsion = 21500.595473 eV Total energy + Delta-G solvation = -3928.059654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.71978 -41.40535 -40.43189 -38.52483 -35.70865 -35.05456 -34.59088 -32.53401 -31.46150 -30.89062 -29.22766 -28.06756 -27.64863 -25.27634 -24.02364 -22.21517 -22.16205 -21.16914 -20.71349 -19.66550 -18.96894 -18.17167 -17.94310 -17.43228 -17.25987 -16.89626 -16.78541 -16.52423 -15.93122 -15.65905 -15.45296 -15.11154 -14.58659 -14.49956 -14.36123 -14.20208 -14.10290 -13.95971 -13.89112 -13.53298 -13.45020 -13.16127 -12.91452 -12.85959 -12.65423 -12.59659 -12.56730 -11.92374 -11.73166 -11.58204 -11.16241 -11.07876 -10.77251 -10.46881 -10.28589 -9.78013 -9.57348 -8.69681 -8.35108 -6.14407 -0.04220 1.18664 1.31180 1.40962 1.42102 1.49758 1.54198 1.59758 1.91521 1.99778 2.24778 2.27061 2.99324 3.17230 3.35544 3.47797 3.64822 3.79750 3.85839 3.92818 4.04346 4.12551 4.20456 4.28257 4.33346 4.42942 4.57210 4.62871 4.70007 4.74808 4.87102 4.89347 4.91909 5.00300 5.02349 5.07847 5.15390 5.32673 5.41688 5.48987 5.78974 6.19664 6.29578 6.32831 6.89821 7.04568 7.06046 8.74600 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.037697 B = 0.001765 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.594692 B =15858.407430 C =16277.923496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.209 4.209 3 C 0.012 3.988 4 O -0.162 6.162 5 C -0.102 4.102 6 C 0.603 3.397 7 O -0.559 6.559 8 N -0.692 5.692 9 C 0.141 3.859 10 H 0.096 0.904 11 C -0.115 4.115 12 C 0.090 3.910 13 N -0.616 5.616 14 C 0.545 3.455 15 O -0.570 6.570 16 C -0.117 4.117 17 S -0.157 6.157 18 C -0.544 4.544 19 H 0.086 0.914 20 C 0.012 3.988 21 N -0.913 5.913 22 Si 1.002 2.998 23 H -0.254 1.254 24 H -0.274 1.274 25 H -0.275 1.275 26 C 0.095 3.905 27 C -0.126 4.126 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.255 0.745 32 H 0.423 0.577 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.271 0.729 40 H 0.047 0.953 41 H 0.076 0.924 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.253 22.281 -17.527 36.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.211 4.211 3 C -0.058 4.058 4 O -0.057 6.057 5 C -0.154 4.154 6 C 0.390 3.610 7 O -0.439 6.439 8 N -0.344 5.344 9 C 0.035 3.965 10 H 0.114 0.886 11 C -0.153 4.153 12 C -0.032 4.032 13 N -0.351 5.351 14 C 0.333 3.667 15 O -0.449 6.449 16 C -0.268 4.268 17 S 0.070 5.930 18 C -0.692 4.692 19 H 0.104 0.896 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.823 3.177 23 H -0.178 1.178 24 H -0.199 1.199 25 H -0.200 1.200 26 C -0.030 4.030 27 C -0.147 4.147 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.271 0.729 32 H 0.262 0.738 33 H 0.141 0.859 34 H 0.130 0.870 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -23.762 20.639 -16.010 35.311 hybrid contribution 1.360 0.154 -0.552 1.476 sum -22.401 20.793 -16.562 34.763 Atomic orbital electron populations 1.20262 0.86808 1.03907 1.03050 1.20842 0.99132 0.91808 1.09274 1.25137 0.78661 1.01628 1.00334 1.84038 1.30628 1.20362 1.70711 1.21633 0.95408 0.81477 1.16892 1.16800 0.82236 0.86061 0.75858 1.90915 1.86605 1.14256 1.52083 1.45559 1.03754 1.11258 1.73779 1.22000 0.84613 0.95688 0.94226 0.88621 1.22955 0.89297 0.99850 1.03197 1.22442 0.97845 0.96120 0.86791 1.48305 1.08655 1.47867 1.30311 1.19913 0.88536 0.77449 0.80791 1.90698 1.72069 1.48762 1.33329 1.23285 0.93710 1.05095 1.04673 1.85686 1.07712 1.61335 1.38262 1.23234 0.92702 1.35629 1.17604 0.89616 1.26175 1.05072 0.93795 0.94208 1.70207 1.37162 1.29591 1.17961 0.84861 0.75644 0.78424 0.78728 1.17754 1.19919 1.20031 1.22583 0.80714 1.00897 0.98795 1.22112 0.91237 1.01358 1.00021 0.90734 0.89218 0.91508 0.72943 0.73780 0.85896 0.87044 0.88833 0.89626 0.86922 0.87192 0.92001 0.93395 0.90591 0.83041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.39 71.23 0.74 0.21 16 2 C -0.21 -2.42 6.14 -20.06 -0.12 -2.55 16 3 C 0.01 0.09 12.00 67.10 0.81 0.90 16 4 O -0.16 -2.11 10.40 -5.06 -0.05 -2.16 16 5 C -0.10 -1.90 7.13 24.07 0.17 -1.72 16 6 C 0.60 13.34 7.78 86.44 0.67 14.02 16 7 O -0.56 -17.26 16.61 -4.33 -0.07 -17.33 16 8 N -0.69 -10.68 5.23 -439.93 -2.30 -12.97 16 9 C 0.14 2.49 3.32 46.38 0.15 2.64 16 10 H 0.10 2.03 7.73 -2.39 -0.02 2.01 16 11 C -0.12 -1.10 6.57 31.79 0.21 -0.89 16 12 C 0.09 1.50 6.49 86.73 0.56 2.06 16 13 N -0.62 -17.67 3.33 -811.78 -2.70 -20.37 16 14 C 0.54 22.02 7.87 87.66 0.69 22.71 16 15 O -0.57 -29.09 16.12 -3.02 -0.05 -29.14 16 16 C -0.12 -4.79 5.35 71.23 0.38 -4.41 16 17 S -0.16 -8.97 20.57 -56.49 -1.16 -10.14 16 18 C -0.54 -31.31 9.50 67.96 0.65 -30.66 16 19 H 0.09 4.54 7.80 -2.91 -0.02 4.52 16 20 C 0.01 0.69 5.49 84.86 0.47 1.16 16 21 N -0.91 -56.80 13.22 21.65 0.29 -56.52 16 22 Si 1.00 43.73 29.55 68.60 2.03 45.75 16 23 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 26 C 0.09 2.49 6.60 86.85 0.57 3.07 16 27 C -0.13 -2.25 10.57 22.39 0.24 -2.02 16 28 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.25 -0.50 8.06 -2.91 -0.02 -0.52 16 32 H 0.42 3.79 8.27 -92.71 -0.77 3.03 16 33 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.11 0.55 8.00 -2.38 -0.02 0.53 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 38 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 39 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 40 H 0.05 1.64 8.04 -2.39 -0.02 1.62 16 41 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -89.24 379.09 2.45 -86.80 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.28 Total: 11.57 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 6.18 Total: 4.51 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -4.71 Total: -89.86 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -0.17 Total: -48.63 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.16 Total: -10.14 kcal Total: -89.24 2.45 -86.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578057180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.185 kcal (2) G-P(sol) polarization free energy of solvation -89.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds