Wall clock time and date at job start Tue Mar 31 2020 20:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40357 * 126.64730 * 2 1 4 4 C 1.35139 * 107.11426 * 179.97438 * 3 2 1 5 5 O 1.33930 * 108.76462 * 0.02562 * 4 3 2 6 6 C 1.34906 * 109.38535 * 359.97438 * 5 4 3 7 7 C 1.46665 * 125.98520 * 180.26564 * 6 5 4 8 8 O 1.21696 * 119.99888 * 179.69345 * 7 6 5 9 9 N 1.34779 * 119.99984 * 359.69141 * 7 6 5 10 10 C 1.46493 * 119.99945 * 180.02562 * 9 7 6 11 11 H 1.09001 * 110.88879 * 31.12006 * 10 9 7 12 12 C 1.55156 * 111.00552 * 155.00059 * 10 9 7 13 13 C 1.54329 * 102.94178 * 153.57456 * 12 10 9 14 14 N 1.47016 * 107.27059 * 337.80565 * 13 12 10 15 15 C 1.34780 * 125.64694 * 178.89095 * 14 13 12 16 16 O 1.21273 * 120.00088 * 180.02562 * 15 14 13 17 17 C 1.50702 * 119.99852 * 0.03517 * 15 14 13 18 18 S 1.81001 * 109.47228 * 179.97438 * 17 15 14 19 19 C 1.76197 * 99.99950 * 179.97438 * 18 17 15 20 20 H 1.07990 * 120.00431 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99525 * 179.97438 * 19 18 17 22 22 N 1.31622 * 120.00267 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99657 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47320 * 89.99883 * 23 21 19 25 25 H 1.48504 * 109.47059 * 209.99935 * 23 21 19 26 26 H 1.48499 * 109.47057 * 329.99859 * 23 21 19 27 27 C 1.47421 * 108.70460 * 358.94336 * 14 13 12 28 28 H 1.08996 * 109.47060 * 270.00034 * 1 2 3 29 29 H 1.08998 * 109.46788 * 29.99697 * 1 2 3 30 30 H 1.09001 * 109.47078 * 149.99297 * 1 2 3 31 31 H 1.08004 * 126.44797 * 0.02623 * 3 2 1 32 32 H 1.08004 * 125.61690 * 180.02562 * 4 3 2 33 33 H 0.96998 * 119.99898 * 359.97438 * 9 7 6 34 34 H 1.08999 * 110.72094 * 271.93786 * 12 10 9 35 35 H 1.08999 * 110.71786 * 35.21311 * 12 10 9 36 36 H 1.08999 * 109.87924 * 97.22895 * 13 12 10 37 37 H 1.08999 * 109.87604 * 218.38701 * 13 12 10 38 38 H 1.09006 * 109.46724 * 299.99263 * 17 15 14 39 39 H 1.08995 * 109.47787 * 59.99302 * 17 15 14 40 40 H 0.97000 * 120.00289 * 180.02562 * 22 21 19 41 41 H 1.09000 * 110.36469 * 265.28798 * 27 14 13 42 42 H 1.09001 * 110.36663 * 142.96508 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1261 0.0000 4 6 3.6184 0.6743 0.0006 5 8 3.6004 -0.6649 0.0004 6 6 2.3220 -1.0956 0.0002 7 6 1.8841 -2.4953 0.0055 8 8 0.6966 -2.7614 0.0104 9 7 2.7970 -3.4869 0.0048 10 6 2.3597 -4.8851 0.0095 11 1 1.4099 -4.9970 -0.5135 12 6 3.4445 -5.8092 -0.6041 13 6 3.1658 -7.1671 0.0743 14 7 2.4323 -6.8912 1.3182 15 6 1.9848 -7.8181 2.1883 16 8 1.3883 -7.4746 3.1868 17 6 2.2259 -9.2814 1.9206 18 16 1.5112 -10.2658 3.2609 19 6 1.9265 -11.8856 2.7057 20 1 2.4672 -12.0173 1.7803 21 6 1.5586 -12.9926 3.4581 22 7 0.9000 -12.8322 4.5864 23 14 1.9981 -14.7099 2.8692 24 1 3.3266 -15.0940 3.4105 25 1 0.9728 -15.6736 3.3440 26 1 2.0444 -14.7276 1.3851 27 6 2.2661 -5.4328 1.4555 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 2.0307 2.1595 0.0004 32 1 4.5047 1.2915 0.0011 33 1 3.7435 -3.2748 0.0004 34 1 3.3205 -5.8851 -1.6843 35 1 4.4429 -5.4507 -0.3537 36 1 2.5606 -7.7921 -0.5822 37 1 4.1069 -7.6676 0.3021 38 1 1.7586 -9.5597 0.9759 39 1 3.2982 -9.4688 1.8645 40 1 0.6432 -13.6057 5.1123 41 1 3.0635 -5.0165 2.0711 42 1 1.2923 -5.2008 1.8867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578345595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:42 Heat of formation + Delta-G solvation = -52.039148 kcal Electronic energy + Delta-G solvation = -25687.310519 eV Core-core repulsion = 21760.489834 eV Total energy + Delta-G solvation = -3926.820685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.13803 -40.36605 -39.27350 -37.31206 -34.92729 -34.17065 -32.42427 -31.46056 -30.59331 -29.70921 -28.43917 -27.40760 -25.48572 -24.00612 -23.07117 -21.93665 -21.17966 -20.38643 -19.38240 -18.59885 -17.71617 -17.03621 -16.81090 -16.63815 -16.35393 -15.51875 -15.26580 -14.80294 -14.73602 -14.59167 -14.23595 -13.92892 -13.74215 -13.60473 -13.44778 -13.42091 -13.01893 -12.92956 -12.66762 -12.54575 -12.19200 -12.04308 -11.93375 -11.75584 -11.16603 -11.05818 -11.01551 -10.76568 -10.51828 -10.14426 -9.82554 -9.66712 -9.39821 -9.06049 -9.01842 -8.53814 -8.22632 -6.49680 -6.20848 -3.91628 0.62749 1.89773 2.21019 2.61844 2.76869 3.01724 3.07237 3.22780 3.27201 3.31186 3.62171 4.07304 4.20527 4.24478 4.33630 4.34348 4.50399 4.62685 4.91974 5.03534 5.05157 5.06836 5.10142 5.14205 5.32673 5.38498 5.39891 5.47512 5.58787 5.60446 5.63053 5.66642 5.77049 5.79334 5.92538 5.94559 6.06009 6.13676 6.36484 6.40546 7.02998 7.59808 7.62629 7.68306 8.35820 8.54198 9.24216 10.86582 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.033189 B = 0.001858 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.461229 B =15063.652238 C =15441.109863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.082 4.082 3 C -0.226 4.226 4 C -0.002 4.002 5 O -0.165 6.165 6 C -0.089 4.089 7 C 0.606 3.394 8 O -0.510 6.510 9 N -0.710 5.710 10 C 0.131 3.869 11 H 0.112 0.888 12 C -0.136 4.136 13 C 0.104 3.896 14 N -0.626 5.626 15 C 0.549 3.451 16 O -0.512 6.512 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.098 3.902 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.157 0.843 32 H 0.211 0.789 33 H 0.407 0.593 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.068 0.932 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.483 27.600 -14.949 32.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.085 4.085 3 C -0.245 4.245 4 C -0.072 4.072 5 O -0.060 6.060 6 C -0.141 4.141 7 C 0.393 3.607 8 O -0.386 6.386 9 N -0.361 5.361 10 C 0.026 3.974 11 H 0.130 0.870 12 C -0.175 4.175 13 C -0.020 4.020 14 N -0.364 5.364 15 C 0.338 3.662 16 O -0.386 6.386 17 C -0.297 4.297 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.026 4.026 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.174 0.826 32 H 0.228 0.772 33 H 0.242 0.758 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.852 27.519 -13.238 31.296 hybrid contribution 1.598 -1.065 -1.516 2.446 sum 8.450 26.454 -14.753 31.446 Atomic orbital electron populations 1.20464 0.88041 1.03712 1.03199 1.20698 0.97812 0.90980 0.99004 1.21784 0.92444 1.00274 1.09964 1.24386 1.00029 0.80522 1.02237 1.84044 1.28271 1.22791 1.70917 1.21783 0.81586 0.94645 1.16102 1.16527 0.85764 0.81837 0.76590 1.90900 1.15605 1.82220 1.49913 1.45719 1.09978 1.05427 1.75016 1.22190 0.99628 0.79159 0.96457 0.86967 1.22939 0.99006 0.94368 1.01167 1.21965 0.97256 0.96774 0.85956 1.48394 1.58501 1.05836 1.23696 1.20057 0.77600 0.86831 0.81736 1.90720 1.39751 1.81504 1.26575 1.23505 1.05325 0.93764 1.07075 1.85434 1.73509 0.99178 1.25272 1.22855 1.42929 0.91446 1.11109 0.90908 1.24996 0.94625 0.99361 0.94622 1.70015 1.36274 1.31079 1.12864 0.86163 0.78277 0.82083 0.78940 1.20286 1.20743 1.19691 1.22473 1.03176 0.80900 0.96083 0.90519 0.91377 0.89380 0.82575 0.77245 0.75757 0.89040 0.89822 0.90702 0.90698 0.89182 0.89243 0.92171 0.91421 0.89692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 9.81 36.01 0.35 -0.46 16 2 C -0.08 -0.74 6.20 -104.44 -0.65 -1.38 16 3 C -0.23 -1.45 10.83 -39.89 -0.43 -1.88 16 4 C 0.00 -0.01 12.08 29.63 0.36 0.35 16 5 O -0.16 -1.26 10.40 5.02 0.05 -1.21 16 6 C -0.09 -0.86 7.13 -36.79 -0.26 -1.12 16 7 C 0.61 6.53 7.79 -12.86 -0.10 6.43 16 8 O -0.51 -7.01 14.38 5.19 0.07 -6.94 16 9 N -0.71 -5.96 5.19 -53.04 -0.28 -6.24 16 10 C 0.13 1.24 3.42 -65.79 -0.23 1.01 16 11 H 0.11 1.21 7.54 -51.93 -0.39 0.82 16 12 C -0.14 -0.94 6.60 -24.89 -0.16 -1.11 16 13 C 0.10 1.04 6.49 -3.06 -0.02 1.02 16 14 N -0.63 -9.11 3.33 -170.52 -0.57 -9.68 16 15 C 0.55 10.84 7.87 -10.98 -0.09 10.75 16 16 O -0.51 -12.26 16.12 5.56 0.09 -12.17 16 17 C -0.15 -3.02 5.35 36.01 0.19 -2.82 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 23 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C 0.10 1.26 6.60 -2.53 -0.02 1.24 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.88 6.46 -51.93 -0.34 0.55 16 31 H 0.16 0.64 8.06 -52.48 -0.42 0.21 16 32 H 0.21 0.22 8.06 -52.48 -0.42 -0.20 16 33 H 0.41 2.46 8.32 -40.82 -0.34 2.12 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.45 8.00 -51.93 -0.42 0.03 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.72 8.14 -51.91 -0.42 1.29 16 39 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 1.30 8.04 -51.93 -0.42 0.89 16 LS Contribution 374.95 15.07 5.65 5.65 Total: -1.00 -37.38 374.95 -8.00 -45.38 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.67 Total: -0.78 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -0.85 Total: -0.99 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: -0.11 Total: -41.49 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: 0.22 Total: -20.32 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.38 -8.00 -45.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578345595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.659 kcal (2) G-P(sol) polarization free energy of solvation -37.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds