Wall clock time and date at job start Tue Mar 31 2020 20:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40357 * 126.64730 * 2 1 4 4 C 1.35139 * 107.11426 * 179.97438 * 3 2 1 5 5 O 1.33930 * 108.76462 * 0.02562 * 4 3 2 6 6 C 1.34906 * 109.38535 * 359.97438 * 5 4 3 7 7 C 1.46665 * 125.98520 * 180.26564 * 6 5 4 8 8 O 1.21696 * 119.99888 * 179.69345 * 7 6 5 9 9 N 1.34779 * 119.99984 * 359.69141 * 7 6 5 10 10 C 1.46493 * 119.99945 * 180.02562 * 9 7 6 11 11 H 1.09001 * 110.88879 * 31.12006 * 10 9 7 12 12 C 1.55156 * 111.00552 * 155.00059 * 10 9 7 13 13 C 1.54329 * 102.94178 * 153.57456 * 12 10 9 14 14 N 1.47016 * 107.27059 * 337.80565 * 13 12 10 15 15 C 1.34780 * 125.64694 * 178.89095 * 14 13 12 16 16 O 1.21273 * 120.00088 * 180.02562 * 15 14 13 17 17 C 1.50702 * 119.99852 * 0.03517 * 15 14 13 18 18 S 1.81001 * 109.47228 * 179.97438 * 17 15 14 19 19 C 1.76197 * 99.99950 * 179.97438 * 18 17 15 20 20 H 1.07990 * 120.00431 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99525 * 179.97438 * 19 18 17 22 22 N 1.31622 * 120.00267 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99657 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47320 * 89.99883 * 23 21 19 25 25 H 1.48504 * 109.47059 * 209.99935 * 23 21 19 26 26 H 1.48499 * 109.47057 * 329.99859 * 23 21 19 27 27 C 1.47421 * 108.70460 * 358.94336 * 14 13 12 28 28 H 1.08996 * 109.47060 * 270.00034 * 1 2 3 29 29 H 1.08998 * 109.46788 * 29.99697 * 1 2 3 30 30 H 1.09001 * 109.47078 * 149.99297 * 1 2 3 31 31 H 1.08004 * 126.44797 * 0.02623 * 3 2 1 32 32 H 1.08004 * 125.61690 * 180.02562 * 4 3 2 33 33 H 0.96998 * 119.99898 * 359.97438 * 9 7 6 34 34 H 1.08999 * 110.72094 * 271.93786 * 12 10 9 35 35 H 1.08999 * 110.71786 * 35.21311 * 12 10 9 36 36 H 1.08999 * 109.87924 * 97.22895 * 13 12 10 37 37 H 1.08999 * 109.87604 * 218.38701 * 13 12 10 38 38 H 1.09006 * 109.46724 * 299.99263 * 17 15 14 39 39 H 1.08995 * 109.47787 * 59.99302 * 17 15 14 40 40 H 0.97000 * 120.00289 * 180.02562 * 22 21 19 41 41 H 1.09000 * 110.36469 * 265.28798 * 27 14 13 42 42 H 1.09001 * 110.36663 * 142.96508 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1261 0.0000 4 6 3.6184 0.6743 0.0006 5 8 3.6004 -0.6649 0.0004 6 6 2.3220 -1.0956 0.0002 7 6 1.8841 -2.4953 0.0055 8 8 0.6966 -2.7614 0.0104 9 7 2.7970 -3.4869 0.0048 10 6 2.3597 -4.8851 0.0095 11 1 1.4099 -4.9970 -0.5135 12 6 3.4445 -5.8092 -0.6041 13 6 3.1658 -7.1671 0.0743 14 7 2.4323 -6.8912 1.3182 15 6 1.9848 -7.8181 2.1883 16 8 1.3883 -7.4746 3.1868 17 6 2.2259 -9.2814 1.9206 18 16 1.5112 -10.2658 3.2609 19 6 1.9265 -11.8856 2.7057 20 1 2.4672 -12.0173 1.7803 21 6 1.5586 -12.9926 3.4581 22 7 0.9000 -12.8322 4.5864 23 14 1.9981 -14.7099 2.8692 24 1 3.3266 -15.0940 3.4105 25 1 0.9728 -15.6736 3.3440 26 1 2.0444 -14.7276 1.3851 27 6 2.2661 -5.4328 1.4555 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 2.0307 2.1595 0.0004 32 1 4.5047 1.2915 0.0011 33 1 3.7435 -3.2748 0.0004 34 1 3.3205 -5.8851 -1.6843 35 1 4.4429 -5.4507 -0.3537 36 1 2.5606 -7.7921 -0.5822 37 1 4.1069 -7.6676 0.3021 38 1 1.7586 -9.5597 0.9759 39 1 3.2982 -9.4688 1.8645 40 1 0.6432 -13.6057 5.1123 41 1 3.0635 -5.0165 2.0711 42 1 1.2923 -5.2008 1.8867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578345595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:41 Heat of formation + Delta-G solvation = -79.350341 kcal Electronic energy + Delta-G solvation = -25688.494822 eV Core-core repulsion = 21760.489834 eV Total energy + Delta-G solvation = -3928.004987 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.68488 -41.37989 -40.40485 -38.52473 -35.75052 -34.90802 -34.59050 -32.50648 -31.30964 -30.88259 -29.40385 -28.29352 -27.64021 -24.97166 -23.83674 -22.54754 -21.95621 -21.08837 -20.74184 -19.67612 -19.17989 -18.17621 -17.85263 -17.41947 -16.99675 -16.89021 -16.76192 -16.47094 -15.87206 -15.63924 -15.44479 -15.18975 -14.59092 -14.55427 -14.34700 -14.19133 -14.05647 -13.90499 -13.86171 -13.54183 -13.44103 -13.16548 -12.88934 -12.85636 -12.79015 -12.67129 -12.61444 -11.89920 -11.74884 -11.35283 -11.14391 -11.06725 -10.69230 -10.44197 -10.28864 -9.77680 -9.58668 -8.69419 -8.34763 -6.14046 -0.01153 1.19193 1.39203 1.42023 1.43118 1.50413 1.54659 1.62695 1.94150 2.01610 2.26450 2.28995 2.99419 3.18520 3.37805 3.48336 3.71860 3.79994 3.86830 3.93689 3.94478 4.14103 4.20274 4.28748 4.43319 4.52263 4.57497 4.62166 4.68457 4.73060 4.73876 4.78588 4.89999 5.01616 5.09895 5.15579 5.21498 5.33323 5.41560 5.44888 5.83498 6.19601 6.30578 6.36380 6.94450 7.05074 7.06195 8.74624 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.033189 B = 0.001858 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.461229 B =15063.652238 C =15441.109863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.096 4.096 3 C -0.239 4.239 4 C 0.019 3.981 5 O -0.167 6.167 6 C -0.119 4.119 7 C 0.602 3.398 8 O -0.552 6.552 9 N -0.695 5.695 10 C 0.141 3.859 11 H 0.097 0.903 12 C -0.116 4.116 13 C 0.090 3.910 14 N -0.616 5.616 15 C 0.545 3.455 16 O -0.569 6.569 17 C -0.117 4.117 18 S -0.156 6.156 19 C -0.544 4.544 20 H 0.085 0.915 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.267 1.267 25 H -0.279 1.279 26 H -0.256 1.256 27 C 0.095 3.905 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.180 0.820 32 H 0.257 0.743 33 H 0.421 0.579 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.271 0.729 41 H 0.077 0.923 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.651 28.568 -17.836 35.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.099 4.099 3 C -0.258 4.258 4 C -0.050 4.050 5 O -0.062 6.062 6 C -0.170 4.170 7 C 0.390 3.610 8 O -0.432 6.432 9 N -0.346 5.346 10 C 0.035 3.965 11 H 0.115 0.885 12 C -0.154 4.154 13 C -0.031 4.031 14 N -0.351 5.351 15 C 0.333 3.667 16 O -0.448 6.448 17 C -0.268 4.268 18 S 0.071 5.929 19 C -0.692 4.692 20 H 0.104 0.896 21 C -0.193 4.193 22 N -0.549 5.549 23 Si 0.823 3.177 24 H -0.192 1.192 25 H -0.204 1.204 26 H -0.180 1.180 27 C -0.029 4.029 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.197 0.803 32 H 0.273 0.727 33 H 0.260 0.740 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.089 28.521 -16.188 34.311 hybrid contribution 0.666 -1.135 -0.666 1.475 sum 10.755 27.386 -16.853 33.907 Atomic orbital electron populations 1.20432 0.88405 1.03632 1.02875 1.21026 0.98104 0.92136 0.98587 1.22104 0.92490 1.00681 1.10497 1.25348 1.01285 0.79656 0.98746 1.84037 1.27108 1.24123 1.70979 1.21524 0.82643 0.94083 1.18790 1.16785 0.85466 0.82819 0.75914 1.90877 1.17316 1.83021 1.51944 1.45555 1.10458 1.04534 1.74075 1.21982 1.00525 0.80135 0.93883 0.88464 1.22953 0.99040 0.91218 1.02219 1.22423 0.97554 0.99174 0.83994 1.48296 1.57013 1.05825 1.23987 1.19897 0.77640 0.87213 0.81910 1.90696 1.42638 1.82197 1.29241 1.23287 1.05992 0.93146 1.04366 1.85672 1.75310 1.01673 1.30261 1.23192 1.43003 0.91432 1.11575 0.89644 1.26174 0.94183 1.04390 0.94555 1.70191 1.37668 1.32548 1.14463 0.84917 0.78159 0.75581 0.79085 1.19203 1.20407 1.18014 1.22585 1.01579 0.80067 0.98710 0.90980 0.89261 0.91594 0.80290 0.72715 0.74023 0.86197 0.87145 0.89706 0.88893 0.87245 0.86960 0.91999 0.90496 0.93294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 9.81 71.24 0.70 -0.98 16 2 C -0.10 -1.66 6.20 -19.74 -0.12 -1.79 16 3 C -0.24 -2.50 10.83 22.07 0.24 -2.26 16 4 C 0.02 0.14 12.08 67.11 0.81 0.95 16 5 O -0.17 -2.19 10.40 -4.95 -0.05 -2.24 16 6 C -0.12 -2.22 7.13 24.08 0.17 -2.05 16 7 C 0.60 13.18 7.79 86.44 0.67 13.85 16 8 O -0.55 -16.19 14.38 -4.34 -0.06 -16.25 16 9 N -0.69 -10.88 5.19 -439.93 -2.28 -13.17 16 10 C 0.14 2.50 3.42 46.38 0.16 2.66 16 11 H 0.10 2.09 7.54 -2.39 -0.02 2.07 16 12 C -0.12 -1.17 6.60 31.78 0.21 -0.96 16 13 C 0.09 1.53 6.49 86.73 0.56 2.09 16 14 N -0.62 -17.55 3.33 -811.81 -2.70 -20.25 16 15 C 0.54 21.90 7.87 87.66 0.69 22.59 16 16 O -0.57 -28.81 16.12 -3.01 -0.05 -28.85 16 17 C -0.12 -4.79 5.35 71.24 0.38 -4.41 16 18 S -0.16 -8.91 20.57 -56.49 -1.16 -10.07 16 19 C -0.54 -31.30 9.50 67.96 0.65 -30.65 16 20 H 0.09 4.51 7.80 -2.92 -0.02 4.49 16 21 C 0.01 0.66 5.49 84.86 0.47 1.13 16 22 N -0.91 -56.74 13.22 21.65 0.29 -56.45 16 23 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 27 C 0.10 2.46 6.60 86.86 0.57 3.04 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.44 6.46 -2.39 -0.02 1.42 16 31 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 32 H 0.26 -0.79 8.06 -2.91 -0.02 -0.82 16 33 H 0.42 4.08 8.32 -92.71 -0.77 3.31 16 34 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.11 0.61 8.00 -2.39 -0.02 0.59 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 39 H 0.11 4.07 8.14 -2.40 -0.02 4.05 16 40 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.05 1.63 8.04 -2.39 -0.02 1.61 16 Total: -1.00 -88.20 374.95 2.44 -85.75 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.28 Total: 12.58 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 6.16 Total: 3.22 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -4.70 Total: -89.87 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -0.16 Total: -47.35 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.16 Total: -10.07 kcal Total: -88.20 2.44 -85.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578345595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.403 kcal (2) G-P(sol) polarization free energy of solvation -88.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds