Wall clock time and date at job start Tue Mar 31 2020 20:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35139 * 126.43923 * 2 1 4 4 O 1.33930 * 108.76462 * 179.97438 * 3 2 1 5 5 C 1.34906 * 109.38535 * 359.97438 * 4 3 2 6 6 C 1.46665 * 125.98520 * 180.26564 * 5 4 3 7 7 O 1.21696 * 119.99888 * 179.69345 * 6 5 4 8 8 N 1.34779 * 119.99984 * 359.69141 * 6 5 4 9 9 C 1.47425 * 125.64457 * 0.02562 * 8 6 5 10 10 C 1.54916 * 104.82835 * 204.09098 * 9 8 6 11 11 C 1.55165 * 101.58084 * 322.99236 * 10 9 8 12 12 H 1.09002 * 110.71807 * 277.13622 * 11 10 9 13 13 N 1.46501 * 110.71641 * 154.04263 * 11 10 9 14 14 C 1.34773 * 119.99627 * 155.00035 * 13 11 10 15 15 O 1.21282 * 120.00247 * 359.97438 * 14 13 11 16 16 C 1.50701 * 120.00256 * 179.97438 * 14 13 11 17 17 S 1.80989 * 109.47573 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00364 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99780 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00349 * 179.97438 * 18 17 16 21 21 N 1.31632 * 119.99944 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 119.99952 * 0.02562 * 20 18 17 23 23 H 1.48508 * 109.47301 * 89.99479 * 22 20 18 24 24 H 1.48500 * 109.47449 * 209.99901 * 22 20 18 25 25 H 1.48504 * 109.47113 * 330.00033 * 22 20 18 26 26 C 1.47018 * 125.64432 * 179.71674 * 8 6 5 27 27 C 1.36545 * 108.02749 * 0.02562 * 5 4 3 28 28 H 1.09005 * 109.47144 * 270.02769 * 1 2 3 29 29 H 1.08995 * 109.47032 * 30.03288 * 1 2 3 30 30 H 1.09000 * 109.46678 * 150.03129 * 1 2 3 31 31 H 1.08004 * 125.61690 * 0.02562 * 3 2 1 32 32 H 1.08998 * 110.37098 * 322.92786 * 9 8 6 33 33 H 1.08999 * 110.36548 * 85.14731 * 9 8 6 34 34 H 1.09000 * 111.00259 * 81.06521 * 10 9 8 35 35 H 1.08999 * 111.00290 * 204.88344 * 10 9 8 36 36 H 0.97001 * 120.00120 * 334.99741 * 13 11 10 37 37 H 1.09007 * 109.46819 * 300.00256 * 16 14 13 38 38 H 1.09004 * 109.46594 * 59.99514 * 16 14 13 39 39 H 0.96997 * 119.99705 * 180.02562 * 21 20 18 40 40 H 1.08994 * 109.88511 * 298.39049 * 26 8 6 41 41 H 1.09001 * 109.88669 * 59.56457 * 26 8 6 42 42 H 1.08000 * 126.64364 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0872 0.0000 4 8 3.5858 0.6805 0.0006 5 6 3.6261 -0.6679 0.0015 6 6 4.8380 -1.4939 0.0079 7 8 4.7473 -2.7074 0.0137 8 7 6.0522 -0.9089 0.0071 9 6 6.3062 0.5433 0.0009 10 6 7.7222 0.6956 -0.6088 11 6 8.4508 -0.5396 -0.0164 12 1 8.8107 -0.3287 0.9907 13 7 9.5563 -0.9544 -0.8836 14 6 10.5995 -1.6337 -0.3671 15 8 10.6233 -1.9012 0.8156 16 6 11.7365 -2.0609 -1.2592 17 16 12.9732 -2.9464 -0.2783 18 6 14.1520 -3.3171 -1.5343 19 1 13.9745 -3.0011 -2.5517 20 6 15.3088 -4.0152 -1.2163 21 7 16.1891 -4.2925 -2.1548 22 14 15.6155 -4.5624 0.5431 23 1 15.0393 -5.9157 0.7483 24 1 17.0773 -4.6024 0.8014 25 1 14.9736 -3.6042 1.4786 26 6 7.3426 -1.6132 0.0189 27 6 2.3408 -1.1291 0.0010 28 1 -0.3634 0.0005 1.0277 29 1 -0.3633 0.8896 -0.5143 30 1 -0.3633 -0.8903 -0.5134 31 1 1.9770 2.1147 0.0004 32 1 5.5695 1.0547 -0.6187 33 1 6.2847 0.9366 1.0172 34 1 7.6866 0.6435 -1.6970 35 1 8.1919 1.6223 -0.2792 36 1 9.5375 -0.7402 -1.8295 37 1 11.3569 -2.7170 -2.0426 38 1 12.1934 -1.1809 -1.7120 39 1 16.9973 -4.7807 -1.9326 40 1 7.4309 -2.2101 0.9267 41 1 7.4228 -2.2550 -0.8585 42 1 2.0268 -2.1624 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578395669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:43 Heat of formation + Delta-G solvation = -51.513492 kcal Electronic energy + Delta-G solvation = -25616.232569 eV Core-core repulsion = 21689.434678 eV Total energy + Delta-G solvation = -3926.797891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.15932 -40.44037 -39.25045 -37.62999 -34.79203 -34.23139 -32.45042 -31.57665 -30.80491 -29.75883 -28.49055 -27.46391 -25.63406 -24.77060 -22.68267 -21.55947 -21.48269 -20.54693 -19.72258 -18.11087 -17.72226 -17.25778 -16.95480 -16.70258 -16.26280 -15.92343 -15.42176 -15.07925 -14.95926 -14.48162 -14.07666 -13.91865 -13.73937 -13.63397 -13.57432 -13.39507 -13.18826 -13.10539 -12.81160 -12.74373 -12.42503 -12.28272 -12.12925 -11.80159 -11.27800 -11.22549 -11.01581 -10.66198 -10.61352 -10.16746 -9.87444 -9.63390 -9.24851 -9.17223 -9.00949 -8.91327 -8.52511 -6.93799 -6.30032 -4.02193 0.64696 1.85063 2.14834 2.53844 2.77866 2.80973 2.85700 3.27042 3.33437 3.49688 3.60854 3.93994 4.06157 4.29565 4.32157 4.34675 4.48044 4.62360 4.70043 4.79153 4.85529 4.94605 5.09133 5.12045 5.13951 5.17398 5.24182 5.34140 5.37879 5.46713 5.47485 5.50858 5.65191 5.71129 5.73846 5.84885 5.94570 5.97570 6.38568 6.43061 6.99294 7.47287 7.64863 7.92914 8.37248 8.40388 9.16079 10.79146 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.036242 B = 0.001836 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.400745 B =15247.224346 C =15528.065351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.193 4.193 3 C -0.013 4.013 4 O -0.159 6.159 5 C -0.070 4.070 6 C 0.615 3.385 7 O -0.516 6.516 8 N -0.609 5.609 9 C 0.100 3.900 10 C -0.139 4.139 11 C 0.138 3.862 12 H 0.110 0.890 13 N -0.727 5.727 14 C 0.533 3.467 15 O -0.515 6.515 16 C -0.125 4.125 17 S -0.140 6.140 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.095 3.905 27 C -0.117 4.117 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.209 0.791 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.403 0.597 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.271 0.729 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.395 16.090 2.056 34.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.194 4.194 3 C -0.083 4.083 4 O -0.055 6.055 5 C -0.122 4.122 6 C 0.403 3.597 7 O -0.393 6.393 8 N -0.343 5.343 9 C -0.022 4.022 10 C -0.178 4.178 11 C 0.031 3.969 12 H 0.128 0.872 13 N -0.382 5.382 14 C 0.319 3.681 15 O -0.388 6.388 16 C -0.275 4.275 17 S 0.086 5.914 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.029 4.029 27 C -0.138 4.138 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.226 0.774 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.238 0.762 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -29.984 15.030 3.986 33.777 hybrid contribution 0.130 0.054 -1.294 1.302 sum -29.854 15.084 2.691 33.557 Atomic orbital electron populations 1.20197 0.88543 1.02958 1.02437 1.20506 0.97788 0.92355 1.08739 1.24254 0.80154 1.00082 1.03792 1.84154 1.29030 1.21637 1.70666 1.21914 0.95776 0.80561 1.13921 1.16183 0.80113 0.86023 0.77360 1.90925 1.85351 1.12113 1.50917 1.48259 1.05253 1.08278 1.72479 1.22467 0.97060 0.80733 1.01987 1.23111 0.94269 0.98757 1.01618 1.21847 0.85963 0.92306 0.96748 0.87220 1.45908 1.20381 1.59574 1.12314 1.20374 0.82351 0.76573 0.88782 1.90715 1.78476 1.53357 1.16281 1.23283 0.97629 1.04519 1.02104 1.84807 1.19009 1.71747 1.15861 1.22313 1.06103 1.42605 0.95983 0.89361 1.24710 0.94562 0.94144 0.97853 1.69938 1.10067 1.38681 1.32931 0.86737 0.78625 0.81265 0.85230 1.19182 1.19923 1.15933 1.22514 0.80919 0.95576 1.03858 1.21863 0.90457 1.00710 1.00733 0.91175 0.91384 0.91197 0.77419 0.89229 0.90437 0.89663 0.88540 0.76225 0.88345 0.88294 0.91924 0.90017 0.90295 0.82231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.39 36.01 0.37 0.02 16 2 C -0.19 -1.30 6.14 -104.93 -0.64 -1.94 16 3 C -0.01 -0.07 12.00 29.63 0.36 0.28 16 4 O -0.16 -1.26 7.86 5.02 0.04 -1.22 16 5 C -0.07 -0.71 6.93 -36.79 -0.25 -0.96 16 6 C 0.61 7.66 7.82 -12.86 -0.10 7.56 16 7 O -0.52 -8.21 17.19 5.19 0.09 -8.12 16 8 N -0.61 -6.44 3.33 -172.05 -0.57 -7.01 16 9 C 0.10 0.71 6.16 -2.53 -0.02 0.70 16 10 C -0.14 -0.89 6.72 -24.57 -0.17 -1.05 16 11 C 0.14 1.38 3.30 -66.08 -0.22 1.17 16 12 H 0.11 1.25 7.55 -51.93 -0.39 0.86 16 13 N -0.73 -8.28 5.12 -52.02 -0.27 -8.54 16 14 C 0.53 8.87 7.85 -10.99 -0.09 8.78 16 15 O -0.51 -10.56 15.51 5.56 0.09 -10.47 16 16 C -0.12 -2.31 6.16 36.01 0.22 -2.09 16 17 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 18 C -0.52 -14.93 10.04 30.94 0.31 -14.62 16 19 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.44 13.97 55.49 0.78 -25.67 16 22 Si 0.86 21.72 27.74 -169.99 -4.71 17.01 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 26 C 0.09 1.10 6.64 -3.06 -0.02 1.08 16 27 C -0.12 -1.07 10.57 -39.40 -0.42 -1.49 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.21 0.32 8.06 -52.48 -0.42 -0.10 16 32 H 0.09 0.56 6.23 -51.93 -0.32 0.24 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.47 8.01 -51.93 -0.42 0.06 16 35 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.40 3.42 8.56 -40.82 -0.35 3.07 16 37 H 0.10 1.71 8.14 -51.91 -0.42 1.28 16 38 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 0.98 8.03 -51.93 -0.42 0.56 16 42 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 372.39 15.07 5.61 5.61 Total: -1.00 -36.63 372.39 -7.40 -44.04 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.70 Total: -0.27 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -0.76 Total: 0.14 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: -0.06 Total: -41.22 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.21 Total: -19.80 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.01 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.63 -7.40 -44.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578395669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.477 kcal (2) G-P(sol) polarization free energy of solvation -36.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds