Wall clock time and date at job start Tue Mar 31 2020 20:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35139 * 126.43923 * 2 1 4 4 O 1.33930 * 108.76462 * 179.97438 * 3 2 1 5 5 C 1.34906 * 109.38535 * 359.97438 * 4 3 2 6 6 C 1.46665 * 125.98520 * 180.26564 * 5 4 3 7 7 O 1.21696 * 119.99888 * 179.69345 * 6 5 4 8 8 N 1.34779 * 119.99984 * 359.69141 * 6 5 4 9 9 C 1.47425 * 125.64457 * 0.02562 * 8 6 5 10 10 C 1.54916 * 104.82835 * 204.09098 * 9 8 6 11 11 C 1.55165 * 101.58084 * 322.99236 * 10 9 8 12 12 H 1.09002 * 110.71807 * 277.13622 * 11 10 9 13 13 N 1.46501 * 110.71641 * 154.04263 * 11 10 9 14 14 C 1.34773 * 119.99627 * 155.00035 * 13 11 10 15 15 O 1.21282 * 120.00247 * 359.97438 * 14 13 11 16 16 C 1.50701 * 120.00256 * 179.97438 * 14 13 11 17 17 S 1.80989 * 109.47573 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00364 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99780 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00349 * 179.97438 * 18 17 16 21 21 N 1.31632 * 119.99944 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 119.99952 * 0.02562 * 20 18 17 23 23 H 1.48508 * 109.47301 * 89.99479 * 22 20 18 24 24 H 1.48500 * 109.47449 * 209.99901 * 22 20 18 25 25 H 1.48504 * 109.47113 * 330.00033 * 22 20 18 26 26 C 1.47018 * 125.64432 * 179.71674 * 8 6 5 27 27 C 1.36545 * 108.02749 * 0.02562 * 5 4 3 28 28 H 1.09005 * 109.47144 * 270.02769 * 1 2 3 29 29 H 1.08995 * 109.47032 * 30.03288 * 1 2 3 30 30 H 1.09000 * 109.46678 * 150.03129 * 1 2 3 31 31 H 1.08004 * 125.61690 * 0.02562 * 3 2 1 32 32 H 1.08998 * 110.37098 * 322.92786 * 9 8 6 33 33 H 1.08999 * 110.36548 * 85.14731 * 9 8 6 34 34 H 1.09000 * 111.00259 * 81.06521 * 10 9 8 35 35 H 1.08999 * 111.00290 * 204.88344 * 10 9 8 36 36 H 0.97001 * 120.00120 * 334.99741 * 13 11 10 37 37 H 1.09007 * 109.46819 * 300.00256 * 16 14 13 38 38 H 1.09004 * 109.46594 * 59.99514 * 16 14 13 39 39 H 0.96997 * 119.99705 * 180.02562 * 21 20 18 40 40 H 1.08994 * 109.88511 * 298.39049 * 26 8 6 41 41 H 1.09001 * 109.88669 * 59.56457 * 26 8 6 42 42 H 1.08000 * 126.64364 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0872 0.0000 4 8 3.5858 0.6805 0.0006 5 6 3.6261 -0.6679 0.0015 6 6 4.8380 -1.4939 0.0079 7 8 4.7473 -2.7074 0.0137 8 7 6.0522 -0.9089 0.0071 9 6 6.3062 0.5433 0.0009 10 6 7.7222 0.6956 -0.6088 11 6 8.4508 -0.5396 -0.0164 12 1 8.8107 -0.3287 0.9907 13 7 9.5563 -0.9544 -0.8836 14 6 10.5995 -1.6337 -0.3671 15 8 10.6233 -1.9012 0.8156 16 6 11.7365 -2.0609 -1.2592 17 16 12.9732 -2.9464 -0.2783 18 6 14.1520 -3.3171 -1.5343 19 1 13.9745 -3.0011 -2.5517 20 6 15.3088 -4.0152 -1.2163 21 7 16.1891 -4.2925 -2.1548 22 14 15.6155 -4.5624 0.5431 23 1 15.0393 -5.9157 0.7483 24 1 17.0773 -4.6024 0.8014 25 1 14.9736 -3.6042 1.4786 26 6 7.3426 -1.6132 0.0189 27 6 2.3408 -1.1291 0.0010 28 1 -0.3634 0.0005 1.0277 29 1 -0.3633 0.8896 -0.5143 30 1 -0.3633 -0.8903 -0.5134 31 1 1.9770 2.1147 0.0004 32 1 5.5695 1.0547 -0.6187 33 1 6.2847 0.9366 1.0172 34 1 7.6866 0.6435 -1.6970 35 1 8.1919 1.6223 -0.2792 36 1 9.5375 -0.7402 -1.8295 37 1 11.3569 -2.7170 -2.0426 38 1 12.1934 -1.1809 -1.7120 39 1 16.9973 -4.7807 -1.9326 40 1 7.4309 -2.2101 0.9267 41 1 7.4228 -2.2550 -0.8585 42 1 2.0268 -2.1624 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578395669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:42 Heat of formation + Delta-G solvation = -78.120727 kcal Electronic energy + Delta-G solvation = -25617.386345 eV Core-core repulsion = 21689.434678 eV Total energy + Delta-G solvation = -3927.951667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.74467 -41.39107 -40.43358 -38.62495 -35.56351 -35.08465 -34.67084 -32.54697 -31.50693 -30.81586 -29.43200 -28.02275 -27.82036 -25.57310 -23.36044 -22.48917 -22.09370 -21.69451 -20.45555 -19.90490 -18.63331 -18.18514 -17.82270 -17.59814 -17.23930 -17.08753 -16.89167 -16.42573 -16.31799 -15.70154 -15.28459 -14.96555 -14.77618 -14.58034 -14.43925 -14.24664 -13.96819 -13.94580 -13.84845 -13.59892 -13.44478 -13.35205 -13.04709 -12.98671 -12.75942 -12.60792 -12.55534 -11.90420 -11.85788 -11.61430 -11.17450 -11.06400 -10.77545 -10.53524 -10.30968 -10.01456 -9.53606 -8.99579 -8.51743 -6.22339 -0.05058 0.97393 1.30895 1.31393 1.35461 1.46688 1.52876 1.56911 1.90802 1.97663 2.23545 2.28024 2.71306 2.86731 3.26300 3.37859 3.62373 3.78887 3.84548 3.98298 4.04120 4.08343 4.21821 4.24660 4.29220 4.47756 4.53518 4.61638 4.67156 4.69386 4.82642 4.87912 4.95825 4.99394 5.02388 5.08939 5.12640 5.37952 5.50078 5.70581 5.82357 6.11471 6.18333 6.40712 6.75566 6.93678 7.13908 8.60549 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.036242 B = 0.001836 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.400745 B =15247.224346 C =15528.065351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.208 4.208 3 C 0.011 3.989 4 O -0.157 6.157 5 C -0.098 4.098 6 C 0.608 3.392 7 O -0.568 6.568 8 N -0.607 5.607 9 C 0.098 3.902 10 C -0.121 4.121 11 C 0.139 3.861 12 H 0.099 0.901 13 N -0.701 5.701 14 C 0.539 3.461 15 O -0.558 6.558 16 C -0.112 4.112 17 S -0.177 6.177 18 C -0.529 4.529 19 H 0.063 0.937 20 C 0.046 3.954 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.265 1.265 24 H -0.259 1.259 25 H -0.236 1.236 26 C 0.096 3.904 27 C -0.124 4.124 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.256 0.744 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.421 0.579 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.277 0.723 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.451 19.300 2.083 37.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.209 4.209 3 C -0.058 4.058 4 O -0.053 6.053 5 C -0.149 4.149 6 C 0.398 3.602 7 O -0.450 6.450 8 N -0.339 5.339 9 C -0.023 4.023 10 C -0.159 4.159 11 C 0.033 3.967 12 H 0.117 0.883 13 N -0.355 5.355 14 C 0.325 3.675 15 O -0.435 6.435 16 C -0.263 4.263 17 S 0.049 5.951 18 C -0.677 4.677 19 H 0.082 0.918 20 C -0.159 4.159 21 N -0.554 5.554 22 Si 0.735 3.265 23 H -0.190 1.190 24 H -0.183 1.183 25 H -0.160 1.160 26 C -0.028 4.028 27 C -0.145 4.145 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.272 0.728 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.141 0.859 36 H 0.259 0.741 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -32.055 18.303 3.969 37.125 hybrid contribution 0.561 -0.825 -1.392 1.712 sum -31.494 17.478 2.577 36.111 Atomic orbital electron populations 1.20261 0.86734 1.03872 1.03093 1.20826 0.99109 0.91681 1.09294 1.25198 0.78855 1.01650 1.00112 1.84134 1.30331 1.20172 1.70642 1.21428 0.94837 0.81580 1.17075 1.16548 0.81170 0.85802 0.76635 1.90878 1.86266 1.14319 1.53524 1.48333 1.04295 1.09815 1.71467 1.22731 0.97896 0.78491 1.03213 1.23136 0.92817 0.97570 1.02424 1.21911 0.84817 0.93465 0.96495 0.88283 1.45622 1.19006 1.57430 1.13449 1.20008 0.82925 0.76861 0.87749 1.90710 1.79492 1.55452 1.17885 1.23276 0.96605 1.04742 1.01655 1.84740 1.20422 1.73246 1.16665 1.22468 1.07136 1.42172 0.95881 0.91839 1.25547 0.94504 0.94321 1.01547 1.70015 1.10816 1.39733 1.34870 0.85883 0.79212 0.80679 0.80688 1.18969 1.18296 1.15967 1.22365 0.82417 0.96048 1.02010 1.22076 0.91001 1.01386 1.00082 0.90607 0.89217 0.91601 0.72804 0.87633 0.89312 0.87987 0.85873 0.74055 0.86919 0.86231 0.91393 0.92723 0.91465 0.83125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.39 71.24 0.74 0.26 16 2 C -0.21 -2.35 6.14 -20.06 -0.12 -2.47 16 3 C 0.01 0.08 12.00 67.11 0.81 0.89 16 4 O -0.16 -2.07 7.86 -4.95 -0.04 -2.11 16 5 C -0.10 -1.95 6.93 24.08 0.17 -1.78 16 6 C 0.61 15.68 7.82 86.44 0.68 16.35 16 7 O -0.57 -19.45 17.19 -4.34 -0.07 -19.53 16 8 N -0.61 -12.64 3.33 -816.47 -2.72 -15.35 16 9 C 0.10 1.14 6.16 86.86 0.54 1.67 16 10 C -0.12 -1.11 6.72 31.99 0.21 -0.90 16 11 C 0.14 2.58 3.30 46.19 0.15 2.73 16 12 H 0.10 2.15 7.55 -2.39 -0.02 2.13 16 13 N -0.70 -14.54 5.12 -436.88 -2.24 -16.78 16 14 C 0.54 17.36 7.85 87.66 0.69 18.04 16 15 O -0.56 -22.87 15.51 -3.04 -0.05 -22.91 16 16 C -0.11 -4.03 6.16 71.24 0.44 -3.59 16 17 S -0.18 -8.86 18.55 -56.49 -1.05 -9.90 16 18 C -0.53 -30.62 10.04 67.95 0.68 -29.94 16 19 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 20 C 0.05 2.71 5.50 84.86 0.47 3.18 16 21 N -0.92 -55.76 13.97 21.65 0.30 -55.45 16 22 Si 0.91 45.10 27.74 68.60 1.90 47.01 16 23 H -0.26 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 25 H -0.24 -11.58 6.74 99.48 0.67 -10.91 16 26 C 0.10 2.25 6.64 86.73 0.58 2.83 16 27 C -0.12 -2.27 10.57 22.39 0.24 -2.03 16 28 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 29 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.26 -0.68 8.06 -2.91 -0.02 -0.71 16 32 H 0.11 0.96 6.23 -2.39 -0.01 0.94 16 33 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 0.68 8.01 -2.39 -0.02 0.66 16 35 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.42 5.84 8.56 -92.71 -0.79 5.05 16 37 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 38 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 39 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 40 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.07 1.72 8.03 -2.39 -0.02 1.70 16 42 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -83.93 372.39 2.52 -81.41 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.22 Total: 8.38 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 6.25 Total: 5.24 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -4.65 Total: -87.58 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: -0.16 Total: -44.56 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.01 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.05 Total: -9.90 kcal Total: -83.93 2.52 -81.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578395669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.289 kcal (2) G-P(sol) polarization free energy of solvation -83.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds