Wall clock time and date at job start Tue Mar 31 2020 20:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35131 * 126.44611 * 2 1 4 4 O 1.33929 * 108.76921 * 180.02562 * 3 2 1 5 5 C 1.34917 * 109.38442 * 0.02562 * 4 3 2 6 6 C 1.46659 * 125.98696 * 179.97438 * 5 4 3 7 7 O 1.21698 * 119.99912 * 180.02562 * 6 5 4 8 8 N 1.34769 * 119.99926 * 0.02562 * 6 5 4 9 9 C 1.46503 * 119.99974 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47355 * 184.97642 * 9 8 6 11 11 H 1.09003 * 112.78279 * 314.88665 * 10 9 8 12 12 C 1.53755 * 113.55226 * 85.74085 * 10 9 8 13 13 C 1.53500 * 83.25862 * 140.99071 * 12 10 9 14 14 N 1.47070 * 113.46947 * 184.10333 * 10 9 8 15 15 C 1.34769 * 136.05848 * 38.14049 * 14 10 9 16 16 O 1.21288 * 119.99831 * 354.63927 * 15 14 10 17 17 C 1.50698 * 120.00200 * 174.64564 * 15 14 10 18 18 S 1.81004 * 109.47177 * 179.97438 * 17 15 14 19 19 C 1.76194 * 100.00009 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00305 * 359.97438 * 19 18 17 21 21 C 1.38805 * 120.00055 * 180.27708 * 19 18 17 22 22 N 1.31633 * 119.99584 * 359.72013 * 21 19 18 23 23 Si 1.86800 * 120.00095 * 179.72403 * 21 19 18 24 24 H 1.48498 * 109.47311 * 59.99566 * 23 21 19 25 25 H 1.48501 * 109.47123 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46653 * 299.99683 * 23 21 19 27 27 C 1.36543 * 108.02341 * 0.22067 * 5 4 3 28 28 H 1.08995 * 109.47460 * 89.96964 * 1 2 3 29 29 H 1.08998 * 109.47202 * 209.97278 * 1 2 3 30 30 H 1.09002 * 109.46923 * 329.97104 * 1 2 3 31 31 H 1.07995 * 125.61507 * 0.02722 * 3 2 1 32 32 H 0.97000 * 120.00235 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.47114 * 64.97644 * 9 8 6 34 34 H 1.08995 * 109.47290 * 304.97639 * 9 8 6 35 35 H 1.08999 * 114.39452 * 27.42469 * 12 10 9 36 36 H 1.09004 * 114.26885 * 254.53986 * 12 10 9 37 37 H 1.08998 * 113.46473 * 218.98786 * 13 12 10 38 38 H 1.08996 * 113.52271 * 88.55254 * 13 12 10 39 39 H 1.08996 * 109.47639 * 59.99297 * 17 15 14 40 40 H 1.09001 * 109.46871 * 299.99064 * 17 15 14 41 41 H 0.96997 * 119.99362 * 180.02562 * 22 21 19 42 42 H 1.08002 * 126.64326 * 179.77378 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0870 0.0000 4 8 3.5858 0.6803 -0.0006 5 6 3.6260 -0.6682 -0.0015 6 6 4.8379 -1.4943 -0.0029 7 8 4.7470 -2.7078 -0.0041 8 7 6.0520 -0.9094 -0.0028 9 6 7.2626 -1.7345 -0.0047 10 6 8.4934 -0.8346 0.1210 11 1 8.4476 0.0370 -0.5321 12 6 8.8580 -0.4916 1.5748 13 6 10.2954 -0.6628 1.0642 14 7 9.7659 -1.5667 0.0319 15 6 10.2399 -2.6050 -0.6846 16 8 9.5002 -3.2200 -1.4233 17 6 11.6890 -3.0019 -0.5680 18 16 12.0147 -4.4199 -1.6447 19 6 13.7293 -4.6633 -1.3199 20 1 14.2445 -4.0163 -0.6253 21 6 14.4194 -5.6825 -1.9615 22 7 13.7915 -6.4707 -2.8084 23 14 16.2389 -5.9357 -1.6229 24 1 16.4390 -6.2203 -0.1793 25 1 16.7373 -7.0807 -2.4265 26 1 16.9868 -4.7074 -1.9936 27 6 2.3407 -1.1292 -0.0065 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5143 31 1 1.9771 2.1145 0.0004 32 1 6.1244 0.0579 -0.0022 33 1 7.3174 -2.2970 -0.9368 34 1 7.2315 -2.4271 0.8363 35 1 8.5507 -1.2407 2.3046 36 1 8.6073 0.5269 1.8712 37 1 10.9536 -1.1577 1.7783 38 1 10.7254 0.2535 0.6597 39 1 11.9099 -3.2719 0.4647 40 1 12.3201 -2.1653 -0.8677 41 1 14.2737 -7.1832 -3.2564 42 1 2.0266 -2.1625 -0.0119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584777151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:10 Heat of formation + Delta-G solvation = -17.219983 kcal Electronic energy + Delta-G solvation = -25347.334583 eV Core-core repulsion = 21422.023770 eV Total energy + Delta-G solvation = -3925.310813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.07886 -40.62465 -39.43416 -37.54379 -35.13695 -34.46225 -32.42943 -31.22770 -30.67364 -28.85984 -28.16589 -27.48539 -25.47740 -24.27010 -22.69800 -22.12579 -21.50656 -20.42803 -18.99665 -18.28991 -17.70055 -16.79162 -16.75899 -16.69575 -16.35383 -15.54815 -15.28196 -15.07584 -14.80248 -14.43549 -14.05835 -13.98016 -13.85729 -13.69527 -13.54908 -13.40156 -13.03264 -12.93666 -12.69009 -12.51887 -12.16718 -12.11888 -11.94239 -11.67594 -11.06108 -11.03790 -10.92563 -10.77023 -10.53193 -10.10586 -9.83617 -9.53279 -9.26999 -9.06003 -8.93969 -8.68965 -8.24498 -6.50701 -6.21321 -3.92483 0.71777 1.91444 2.26314 2.55985 2.91340 2.96242 3.09029 3.23599 3.25729 3.29306 3.56154 4.03829 4.20179 4.27544 4.35782 4.50808 4.55275 4.63606 4.76684 4.90945 4.92627 5.13183 5.13949 5.17686 5.23181 5.30528 5.38075 5.44539 5.50754 5.52125 5.56597 5.61194 5.77591 5.82575 5.93317 5.94445 5.99750 6.12577 6.18108 6.44187 7.14769 7.59107 7.77906 7.82647 8.34915 8.50017 9.23537 10.86045 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.001838 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.163776 B =15233.024660 C =15979.414936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.193 4.193 3 C -0.011 4.011 4 O -0.163 6.163 5 C -0.073 4.073 6 C 0.601 3.399 7 O -0.511 6.511 8 N -0.715 5.715 9 C 0.111 3.889 10 C 0.123 3.877 11 H 0.096 0.904 12 C -0.152 4.152 13 C 0.101 3.899 14 N -0.647 5.647 15 C 0.561 3.439 16 O -0.508 6.508 17 C -0.144 4.144 18 S -0.058 6.058 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.274 1.274 27 C -0.118 4.118 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.209 0.791 32 H 0.404 0.596 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.575 21.366 10.511 32.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.195 4.195 3 C -0.081 4.081 4 O -0.059 6.059 5 C -0.125 4.125 6 C 0.387 3.613 7 O -0.388 6.388 8 N -0.367 5.367 9 C -0.012 4.012 10 C 0.018 3.982 11 H 0.114 0.886 12 C -0.190 4.190 13 C -0.022 4.022 14 N -0.387 5.387 15 C 0.351 3.649 16 O -0.381 6.381 17 C -0.295 4.295 18 S 0.168 5.832 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.138 4.138 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.226 0.774 32 H 0.238 0.762 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -22.306 19.346 9.132 30.907 hybrid contribution 1.994 1.092 0.975 2.473 sum -20.312 20.438 10.107 30.536 Atomic orbital electron populations 1.20194 0.88549 1.02928 1.02452 1.20513 0.97797 0.92393 1.08750 1.24196 0.79899 1.00047 1.03944 1.84043 1.29399 1.21674 1.70748 1.22059 0.96139 0.80491 1.13836 1.16503 0.81141 0.86414 0.77270 1.90947 1.85789 1.12203 1.49869 1.45723 1.05380 1.10681 1.74884 1.21709 0.81254 0.93214 1.05039 1.22810 0.85243 0.93792 0.96311 0.88618 1.23640 0.96374 1.03198 0.95748 1.22890 0.96841 0.93359 0.89109 1.49760 1.14441 1.31670 1.42783 1.20024 0.89486 0.77763 0.77645 1.90731 1.58717 1.51505 1.37153 1.23477 0.93617 1.05975 1.06411 1.85436 1.11828 1.31943 1.53974 1.22818 0.94621 1.20003 1.31075 0.90974 1.24995 0.99247 0.94823 0.94471 1.70011 1.36658 1.17570 1.25968 0.86216 0.82838 0.77913 0.78481 1.19927 1.20781 1.19946 1.21888 0.90549 1.00732 1.00660 0.91167 0.91183 0.91416 0.77414 0.76157 0.88991 0.90082 0.88372 0.89202 0.89943 0.89712 0.89294 0.89280 0.92094 0.82184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.39 36.00 0.37 -0.02 16 2 C -0.19 -1.41 6.14 -104.93 -0.64 -2.05 16 3 C -0.01 -0.07 12.00 29.63 0.36 0.29 16 4 O -0.16 -1.37 10.40 4.99 0.05 -1.32 16 5 C -0.07 -0.77 7.13 -36.80 -0.26 -1.03 16 6 C 0.60 7.63 7.79 -12.86 -0.10 7.53 16 7 O -0.51 -8.57 16.86 5.19 0.09 -8.48 16 8 N -0.72 -7.36 5.55 -61.63 -0.34 -7.71 16 9 C 0.11 1.40 5.40 -4.04 -0.02 1.38 16 10 C 0.12 1.26 4.09 -72.26 -0.30 0.97 16 11 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 12 C -0.15 -1.09 8.03 -26.08 -0.21 -1.30 16 13 C 0.10 0.91 8.41 -8.50 -0.07 0.83 16 14 N -0.65 -8.93 3.56 -177.27 -0.63 -9.56 16 15 C 0.56 10.85 8.02 -10.99 -0.09 10.76 16 16 O -0.51 -11.85 15.24 5.55 0.08 -11.76 16 17 C -0.14 -2.99 5.99 36.00 0.22 -2.77 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -15.42 9.50 30.94 0.29 -15.13 16 20 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.38 13.22 55.49 0.73 -25.64 16 23 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 C -0.12 -1.15 10.57 -39.39 -0.42 -1.56 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.21 0.42 8.06 -52.49 -0.42 -0.01 16 32 H 0.40 2.90 8.23 -40.82 -0.34 2.57 16 33 H 0.09 1.52 7.05 -51.93 -0.37 1.16 16 34 H 0.08 1.11 7.90 -51.93 -0.41 0.70 16 35 H 0.10 0.76 7.97 -51.93 -0.41 0.34 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 40 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 41 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 381.88 15.07 5.75 5.75 Total: -1.00 -38.08 381.88 -8.18 -46.27 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.72 Total: -0.15 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -0.97 Total: -0.06 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -0.24 Total: -42.91 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: 0.22 Total: -21.56 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.08 -8.18 -46.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584777151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.047 kcal (2) G-P(sol) polarization free energy of solvation -38.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds