Wall clock time and date at job start Tue Mar 31 2020 20:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35131 * 126.44611 * 2 1 4 4 O 1.33929 * 108.76921 * 180.02562 * 3 2 1 5 5 C 1.34917 * 109.38442 * 0.02562 * 4 3 2 6 6 C 1.46659 * 125.98696 * 179.97438 * 5 4 3 7 7 O 1.21698 * 119.99912 * 180.02562 * 6 5 4 8 8 N 1.34769 * 119.99926 * 0.02562 * 6 5 4 9 9 C 1.46503 * 119.99974 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47355 * 184.97642 * 9 8 6 11 11 H 1.09003 * 112.78279 * 314.88665 * 10 9 8 12 12 C 1.53755 * 113.55226 * 85.74085 * 10 9 8 13 13 C 1.53500 * 83.25862 * 140.99071 * 12 10 9 14 14 N 1.47070 * 113.46947 * 184.10333 * 10 9 8 15 15 C 1.34769 * 136.05848 * 38.14049 * 14 10 9 16 16 O 1.21288 * 119.99831 * 354.63927 * 15 14 10 17 17 C 1.50698 * 120.00200 * 174.64564 * 15 14 10 18 18 S 1.81004 * 109.47177 * 179.97438 * 17 15 14 19 19 C 1.76194 * 100.00009 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00305 * 359.97438 * 19 18 17 21 21 C 1.38805 * 120.00055 * 180.27708 * 19 18 17 22 22 N 1.31633 * 119.99584 * 359.72013 * 21 19 18 23 23 Si 1.86800 * 120.00095 * 179.72403 * 21 19 18 24 24 H 1.48498 * 109.47311 * 59.99566 * 23 21 19 25 25 H 1.48501 * 109.47123 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46653 * 299.99683 * 23 21 19 27 27 C 1.36543 * 108.02341 * 0.22067 * 5 4 3 28 28 H 1.08995 * 109.47460 * 89.96964 * 1 2 3 29 29 H 1.08998 * 109.47202 * 209.97278 * 1 2 3 30 30 H 1.09002 * 109.46923 * 329.97104 * 1 2 3 31 31 H 1.07995 * 125.61507 * 0.02722 * 3 2 1 32 32 H 0.97000 * 120.00235 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.47114 * 64.97644 * 9 8 6 34 34 H 1.08995 * 109.47290 * 304.97639 * 9 8 6 35 35 H 1.08999 * 114.39452 * 27.42469 * 12 10 9 36 36 H 1.09004 * 114.26885 * 254.53986 * 12 10 9 37 37 H 1.08998 * 113.46473 * 218.98786 * 13 12 10 38 38 H 1.08996 * 113.52271 * 88.55254 * 13 12 10 39 39 H 1.08996 * 109.47639 * 59.99297 * 17 15 14 40 40 H 1.09001 * 109.46871 * 299.99064 * 17 15 14 41 41 H 0.96997 * 119.99362 * 180.02562 * 22 21 19 42 42 H 1.08002 * 126.64326 * 179.77378 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0870 0.0000 4 8 3.5858 0.6803 -0.0006 5 6 3.6260 -0.6682 -0.0015 6 6 4.8379 -1.4943 -0.0029 7 8 4.7470 -2.7078 -0.0041 8 7 6.0520 -0.9094 -0.0028 9 6 7.2626 -1.7345 -0.0047 10 6 8.4934 -0.8346 0.1210 11 1 8.4476 0.0370 -0.5321 12 6 8.8580 -0.4916 1.5748 13 6 10.2954 -0.6628 1.0642 14 7 9.7659 -1.5667 0.0319 15 6 10.2399 -2.6050 -0.6846 16 8 9.5002 -3.2200 -1.4233 17 6 11.6890 -3.0019 -0.5680 18 16 12.0147 -4.4199 -1.6447 19 6 13.7293 -4.6633 -1.3199 20 1 14.2445 -4.0163 -0.6253 21 6 14.4194 -5.6825 -1.9615 22 7 13.7915 -6.4707 -2.8084 23 14 16.2389 -5.9357 -1.6229 24 1 16.4390 -6.2203 -0.1793 25 1 16.7373 -7.0807 -2.4265 26 1 16.9868 -4.7074 -1.9936 27 6 2.3407 -1.1292 -0.0065 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5143 31 1 1.9771 2.1145 0.0004 32 1 6.1244 0.0579 -0.0022 33 1 7.3174 -2.2970 -0.9368 34 1 7.2315 -2.4271 0.8363 35 1 8.5507 -1.2407 2.3046 36 1 8.6073 0.5269 1.8712 37 1 10.9536 -1.1577 1.7783 38 1 10.7254 0.2535 0.6597 39 1 11.9099 -3.2719 0.4647 40 1 12.3201 -2.1653 -0.8677 41 1 14.2737 -7.1832 -3.2564 42 1 2.0266 -2.1625 -0.0119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584777151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:09 Heat of formation + Delta-G solvation = -45.981236 kcal Electronic energy + Delta-G solvation = -25348.581764 eV Core-core repulsion = 21422.023770 eV Total energy + Delta-G solvation = -3926.557994 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.72293 -41.66347 -40.49706 -38.91920 -36.09781 -35.10458 -34.60833 -32.33016 -31.71412 -29.69324 -29.47192 -28.01795 -27.66084 -25.07367 -23.54988 -23.16379 -22.20304 -21.29557 -20.24529 -19.52710 -19.01095 -18.03873 -17.51223 -17.47302 -17.38993 -16.90549 -16.77615 -16.46141 -16.19353 -15.77416 -15.58277 -15.03708 -14.71533 -14.51288 -14.43769 -14.12025 -13.97278 -13.93150 -13.84331 -13.52724 -13.42435 -13.18157 -12.96733 -12.87385 -12.65822 -12.56925 -12.44749 -11.84959 -11.77532 -11.53471 -11.14669 -10.90635 -10.77272 -10.37953 -10.31149 -9.81262 -9.57205 -8.71190 -8.36293 -6.16013 -0.04141 1.14820 1.31507 1.38229 1.43140 1.50264 1.52344 1.58986 1.87335 1.99720 2.24751 2.27292 2.97673 3.17145 3.32096 3.59258 3.64732 3.70854 3.79728 3.95796 4.00225 4.04701 4.22603 4.31902 4.42516 4.45564 4.56479 4.62824 4.64166 4.71028 4.87906 4.90409 4.92037 4.96770 5.01895 5.07880 5.12573 5.30544 5.38864 5.49473 5.78417 6.17347 6.31911 6.58794 6.90299 7.04183 7.08668 8.72866 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.001838 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.163776 B =15233.024660 C =15979.414936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.209 4.209 3 C 0.014 3.986 4 O -0.161 6.161 5 C -0.100 4.100 6 C 0.598 3.402 7 O -0.567 6.567 8 N -0.695 5.695 9 C 0.120 3.880 10 C 0.120 3.880 11 H 0.127 0.873 12 C -0.126 4.126 13 C 0.096 3.904 14 N -0.650 5.650 15 C 0.556 3.444 16 O -0.565 6.565 17 C -0.117 4.117 18 S -0.155 6.155 19 C -0.548 4.548 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.261 1.261 25 H -0.279 1.279 26 H -0.260 1.260 27 C -0.127 4.127 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.258 0.742 32 H 0.423 0.577 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.138 0.862 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.271 0.729 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.338 25.858 12.700 35.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.210 4.210 3 C -0.055 4.055 4 O -0.056 6.056 5 C -0.152 4.152 6 C 0.386 3.614 7 O -0.448 6.448 8 N -0.347 5.347 9 C -0.005 4.005 10 C 0.017 3.983 11 H 0.144 0.856 12 C -0.163 4.163 13 C -0.025 4.025 14 N -0.387 5.387 15 C 0.345 3.655 16 O -0.444 6.444 17 C -0.268 4.268 18 S 0.072 5.928 19 C -0.695 4.695 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.823 3.177 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.185 1.185 27 C -0.147 4.147 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.273 0.727 32 H 0.261 0.739 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.156 0.844 37 H 0.107 0.893 38 H 0.135 0.865 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.068 23.949 11.377 34.496 hybrid contribution 1.720 -0.118 0.363 1.762 sum -20.348 23.831 11.739 33.463 Atomic orbital electron populations 1.20262 0.86672 1.03933 1.03090 1.20842 0.99171 0.91673 1.09311 1.25172 0.78562 1.01658 1.00155 1.84034 1.30732 1.20159 1.70709 1.21525 0.95136 0.81523 1.17039 1.16840 0.82259 0.86072 0.76262 1.90909 1.86694 1.14634 1.52561 1.45478 1.04077 1.11346 1.73800 1.21430 0.83467 0.93788 1.01800 1.23241 0.82268 0.93136 0.99675 0.85566 1.23601 0.94228 1.05661 0.92855 1.23358 0.98251 0.93191 0.87686 1.49815 1.16661 1.30506 1.41743 1.19728 0.88562 0.79210 0.77986 1.90712 1.59613 1.54025 1.40008 1.23257 0.95493 1.02955 1.05053 1.85657 1.13058 1.36825 1.57239 1.23164 0.94492 1.20503 1.31369 0.89808 1.26181 1.04938 0.94201 0.93883 1.70192 1.38989 1.18361 1.27295 0.84965 0.75692 0.78263 0.78822 1.18583 1.20375 1.18459 1.22108 0.91189 1.01405 1.00046 0.90667 0.91581 0.89080 0.72661 0.73927 0.93770 0.91907 0.88948 0.84434 0.89300 0.86524 0.87725 0.87431 0.91962 0.83196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.39 71.24 0.74 0.16 16 2 C -0.21 -2.64 6.14 -20.06 -0.12 -2.77 16 3 C 0.01 0.12 12.00 67.10 0.81 0.93 16 4 O -0.16 -2.34 10.40 -5.05 -0.05 -2.39 16 5 C -0.10 -2.12 7.13 24.07 0.17 -1.95 16 6 C 0.60 16.05 7.79 86.44 0.67 16.73 16 7 O -0.57 -20.86 16.86 -4.34 -0.07 -20.93 16 8 N -0.69 -14.37 5.55 -467.11 -2.59 -16.96 16 9 C 0.12 3.15 5.40 86.38 0.47 3.62 16 10 C 0.12 2.24 4.09 41.88 0.17 2.41 16 11 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 12 C -0.13 -1.29 8.03 31.02 0.25 -1.04 16 13 C 0.10 1.34 8.41 83.18 0.70 2.04 16 14 N -0.65 -17.17 3.56 -833.15 -2.97 -20.14 16 15 C 0.56 22.05 8.02 87.66 0.70 22.75 16 16 O -0.57 -28.23 15.24 -3.05 -0.05 -28.28 16 17 C -0.12 -4.86 5.99 71.24 0.43 -4.44 16 18 S -0.15 -8.94 20.57 -56.49 -1.16 -10.11 16 19 C -0.55 -31.94 9.50 67.96 0.65 -31.29 16 20 H 0.08 4.50 7.80 -2.91 -0.02 4.48 16 21 C 0.01 0.73 5.49 84.86 0.47 1.20 16 22 N -0.91 -57.25 13.22 21.65 0.29 -56.97 16 23 Si 1.00 44.11 29.55 68.60 2.03 46.13 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 27 C -0.13 -2.51 10.57 22.39 0.24 -2.27 16 28 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.26 -0.43 8.06 -2.91 -0.02 -0.45 16 32 H 0.42 5.30 8.23 -92.71 -0.76 4.54 16 33 H 0.04 1.62 7.05 -2.39 -0.02 1.60 16 34 H 0.06 1.86 7.90 -2.39 -0.02 1.84 16 35 H 0.09 1.14 7.97 -2.39 -0.02 1.12 16 36 H 0.14 0.29 8.14 -2.38 -0.02 0.27 16 37 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 3.98 8.14 -2.40 -0.02 3.96 16 40 H 0.11 4.04 8.14 -2.39 -0.02 4.03 16 41 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 42 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -92.60 381.88 2.04 -90.56 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.29 Total: 13.00 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 6.33 Total: 6.07 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -5.27 Total: -94.06 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -0.17 Total: -51.60 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -8.94 SS G_CDS: -1.16 Total: -10.11 kcal Total: -92.60 2.04 -90.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584777151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.581 kcal (2) G-P(sol) polarization free energy of solvation -92.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds