Wall clock time and date at job start Tue Mar 31 2020 20:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35124 * 126.44523 * 2 1 4 4 O 1.33931 * 108.77085 * 180.29058 * 3 2 1 5 5 C 1.34918 * 109.38108 * 359.72153 * 4 3 2 6 6 C 1.46656 * 125.98656 * 179.97438 * 5 4 3 7 7 O 1.21692 * 120.00482 * 180.02562 * 6 5 4 8 8 N 1.34776 * 119.99966 * 0.02562 * 6 5 4 9 9 C 1.46502 * 120.00024 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47007 * 184.93612 * 9 8 6 11 11 H 1.08994 * 112.96762 * 308.98746 * 10 9 8 12 12 C 1.53955 * 113.76957 * 177.30878 * 10 9 8 13 13 C 1.53941 * 86.29050 * 222.09163 * 12 10 9 14 14 N 1.47584 * 113.77215 * 80.66909 * 10 9 8 15 15 C 1.34774 * 134.49059 * 318.93066 * 14 10 9 16 16 O 1.21287 * 120.00079 * 5.08876 * 15 14 10 17 17 C 1.50696 * 120.00312 * 185.08595 * 15 14 10 18 18 S 1.81001 * 109.47484 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00094 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99809 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99811 * 180.02562 * 19 18 17 22 22 N 1.31626 * 120.00470 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99879 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46775 * 59.99890 * 23 21 19 25 25 H 1.48494 * 109.46851 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46904 * 299.99934 * 23 21 19 27 27 C 1.36540 * 108.02674 * 0.02562 * 5 4 3 28 28 H 1.09003 * 109.47167 * 270.16801 * 1 2 3 29 29 H 1.08993 * 109.46887 * 30.17470 * 1 2 3 30 30 H 1.09000 * 109.47132 * 150.17377 * 1 2 3 31 31 H 1.08007 * 125.61916 * 0.04662 * 3 2 1 32 32 H 0.97006 * 120.00186 * 0.02562 * 8 6 5 33 33 H 1.09001 * 109.47189 * 304.93502 * 9 8 6 34 34 H 1.08990 * 109.47164 * 64.93545 * 9 8 6 35 35 H 1.08996 * 113.73924 * 336.44004 * 12 10 9 36 36 H 1.08998 * 113.73939 * 107.74444 * 12 10 9 37 37 H 1.09003 * 113.77011 * 137.90745 * 13 12 10 38 38 H 1.09004 * 113.77170 * 269.19140 * 13 12 10 39 39 H 1.08995 * 109.47523 * 300.00199 * 17 15 14 40 40 H 1.09003 * 109.47071 * 60.00282 * 17 15 14 41 41 H 0.96991 * 120.00423 * 179.97438 * 22 21 19 42 42 H 1.07999 * 126.64869 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6804 -0.0064 5 6 3.6260 -0.6682 -0.0045 6 6 4.8378 -1.4942 -0.0104 7 8 4.7471 -2.7078 -0.0083 8 7 6.0520 -0.9093 -0.0181 9 6 7.2625 -1.7345 -0.0246 10 6 8.4941 -0.8340 0.0914 11 1 8.4959 -0.0204 -0.6338 12 6 9.8237 -1.6071 0.1601 13 6 10.2344 -0.6052 1.2543 14 7 8.7866 -0.4012 1.4717 15 6 8.0351 0.0126 2.5111 16 8 6.8251 -0.0040 2.4292 17 6 8.6981 0.4957 3.7752 18 16 7.4312 0.9775 4.9749 19 6 8.4563 1.4864 6.3146 20 1 9.5311 1.4368 6.2212 21 6 7.8823 1.9500 7.4903 22 7 6.5724 2.0100 7.6042 23 14 8.9691 2.4889 8.9110 24 1 9.8399 3.6084 8.4710 25 1 8.1183 2.9391 10.0417 26 1 9.8128 1.3481 9.3491 27 6 2.3408 -1.1293 0.0028 28 1 -0.3634 0.0030 1.0277 29 1 -0.3633 0.8884 -0.5165 30 1 -0.3633 -0.8915 -0.5111 31 1 1.9771 2.1146 0.0007 32 1 6.1244 0.0580 -0.0194 33 1 7.2363 -2.4246 0.8186 34 1 7.3120 -2.2996 -0.9552 35 1 9.7181 -2.6307 0.5194 36 1 10.4213 -1.5339 -0.7486 37 1 10.7464 -1.0640 2.1003 38 1 10.7498 0.2760 0.8723 39 1 9.3088 -0.3042 4.1938 40 1 9.3298 1.3546 3.5487 41 1 6.1714 2.3336 8.4259 42 1 2.0266 -2.1625 0.0057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584777152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:14 Heat of formation + Delta-G solvation = -21.129868 kcal Electronic energy + Delta-G solvation = -26333.568504 eV Core-core repulsion = 22408.088146 eV Total energy + Delta-G solvation = -3925.480358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.67922 -40.44341 -39.08997 -37.40691 -34.80330 -34.10962 -32.44233 -30.99583 -30.53606 -28.69700 -28.10773 -27.20393 -25.48711 -24.18707 -22.45600 -22.02461 -21.12654 -20.01438 -18.90433 -18.02812 -17.63819 -16.63771 -16.49427 -16.35435 -16.15585 -15.75775 -15.23808 -14.81954 -14.68716 -14.36171 -13.98509 -13.84305 -13.61914 -13.32961 -13.23369 -13.05820 -12.86134 -12.66922 -12.48447 -12.42057 -12.21393 -11.94194 -11.81532 -11.59766 -11.25427 -11.05115 -11.04767 -10.77807 -10.23272 -9.84101 -9.73428 -9.31832 -9.10969 -9.07171 -8.63988 -8.55421 -8.24943 -6.51218 -6.22556 -3.93373 1.10773 2.27967 2.60985 2.74626 3.04494 3.18873 3.22228 3.24252 3.27681 3.33039 3.54623 4.15729 4.19346 4.54850 4.62534 4.67230 4.71417 4.78673 4.88766 5.02665 5.11686 5.12654 5.21744 5.29708 5.34846 5.48202 5.48651 5.54205 5.59393 5.67201 5.70821 5.83177 5.85854 5.92405 5.95860 6.10191 6.13846 6.34640 6.35589 6.83603 7.50373 7.57828 7.79486 8.13535 8.33683 8.54454 9.22426 10.84767 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009237 B = 0.003323 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.632290 B = 8424.742497 C =11002.343380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.198 4.198 3 C -0.008 4.008 4 O -0.157 6.157 5 C -0.066 4.066 6 C 0.609 3.391 7 O -0.531 6.531 8 N -0.699 5.699 9 C 0.122 3.878 10 C 0.120 3.880 11 H 0.097 0.903 12 C -0.141 4.141 13 C 0.103 3.897 14 N -0.650 5.650 15 C 0.553 3.447 16 O -0.504 6.504 17 C -0.145 4.145 18 S -0.059 6.059 19 C -0.537 4.537 20 H 0.071 0.929 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.274 1.274 27 C -0.123 4.123 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.208 0.792 32 H 0.408 0.592 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.269 0.731 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.154 -3.985 -20.712 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.199 4.199 3 C -0.078 4.078 4 O -0.052 6.052 5 C -0.118 4.118 6 C 0.395 3.605 7 O -0.411 6.411 8 N -0.349 5.349 9 C -0.002 4.002 10 C 0.016 3.984 11 H 0.115 0.885 12 C -0.179 4.179 13 C -0.020 4.020 14 N -0.390 5.390 15 C 0.342 3.658 16 O -0.377 6.377 17 C -0.296 4.296 18 S 0.168 5.832 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.144 4.144 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.224 0.776 32 H 0.243 0.757 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.705 -4.574 -20.514 21.086 hybrid contribution 2.051 0.983 1.243 2.592 sum 0.347 -3.591 -19.271 19.606 Atomic orbital electron populations 1.20162 0.88718 1.02561 1.02415 1.20457 0.97648 0.92434 1.09360 1.24187 0.79997 1.00039 1.03539 1.84089 1.29253 1.21651 1.70169 1.21986 0.96044 0.80642 1.13170 1.16430 0.81305 0.86192 0.76527 1.90848 1.86176 1.12361 1.51668 1.45600 1.04811 1.10944 1.73525 1.21540 0.82312 0.93475 1.02858 1.23032 0.94672 0.95903 0.84823 0.88506 1.23539 0.95025 0.99675 0.99700 1.23120 0.83311 0.97666 0.97934 1.50326 1.08343 1.68958 1.11410 1.20075 0.86870 0.75570 0.83280 1.90732 1.13286 1.52311 1.81364 1.23475 1.05396 1.03476 0.97207 1.85407 1.06704 1.83145 1.07928 1.22817 0.94527 1.50289 1.00840 0.91049 1.24985 0.95377 0.95045 0.98101 1.70002 1.09268 1.43649 1.27338 0.86231 0.79803 0.79023 0.80489 1.19944 1.20774 1.19925 1.21784 0.90568 1.00434 1.01577 0.91193 0.91567 0.91445 0.77551 0.75651 0.90271 0.90223 0.88479 0.89377 0.89744 0.89733 0.89576 0.89501 0.92118 0.82467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.39 36.01 0.37 -0.32 16 2 C -0.20 -2.33 6.14 -104.93 -0.64 -2.98 16 3 C -0.01 -0.09 12.00 29.62 0.36 0.27 16 4 O -0.16 -2.28 10.40 4.98 0.05 -2.22 16 5 C -0.07 -1.03 7.13 -36.80 -0.26 -1.29 16 6 C 0.61 10.06 7.79 -12.86 -0.10 9.96 16 7 O -0.53 -9.94 16.86 5.20 0.09 -9.86 16 8 N -0.70 -10.04 4.18 -61.63 -0.26 -10.30 16 9 C 0.12 1.47 5.22 -4.04 -0.02 1.45 16 10 C 0.12 1.17 4.29 -66.86 -0.29 0.89 16 11 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 12 C -0.14 -0.96 7.86 -25.79 -0.20 -1.16 16 13 C 0.10 0.89 8.63 -2.85 -0.02 0.87 16 14 N -0.65 -8.60 3.50 -170.16 -0.60 -9.20 16 15 C 0.55 10.34 7.99 -10.99 -0.09 10.25 16 16 O -0.50 -11.12 14.40 5.55 0.08 -11.04 16 17 C -0.15 -2.98 5.92 36.00 0.21 -2.76 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 22 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 23 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 27 C -0.12 -1.72 10.57 -39.39 -0.42 -2.14 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.21 1.55 8.06 -52.48 -0.42 1.13 16 32 H 0.41 5.75 7.89 -40.82 -0.32 5.42 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 40 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 41 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 380.69 15.07 5.74 5.74 Total: -1.00 -37.67 380.69 -8.09 -45.76 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.78 Total: 4.07 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -0.91 Total: 0.00 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.12 Total: -45.08 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: 0.22 Total: -23.12 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.67 -8.09 -45.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584777152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.628 kcal (2) G-P(sol) polarization free energy of solvation -37.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds