Wall clock time and date at job start Tue Mar 31 2020 20:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35124 * 126.44523 * 2 1 4 4 O 1.33931 * 108.77085 * 180.29058 * 3 2 1 5 5 C 1.34918 * 109.38108 * 359.72153 * 4 3 2 6 6 C 1.46656 * 125.98656 * 179.97438 * 5 4 3 7 7 O 1.21692 * 120.00482 * 180.02562 * 6 5 4 8 8 N 1.34776 * 119.99966 * 0.02562 * 6 5 4 9 9 C 1.46502 * 120.00024 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47007 * 184.93612 * 9 8 6 11 11 H 1.08994 * 112.96762 * 308.98746 * 10 9 8 12 12 C 1.53955 * 113.76957 * 177.30878 * 10 9 8 13 13 C 1.53941 * 86.29050 * 222.09163 * 12 10 9 14 14 N 1.47584 * 113.77215 * 80.66909 * 10 9 8 15 15 C 1.34774 * 134.49059 * 318.93066 * 14 10 9 16 16 O 1.21287 * 120.00079 * 5.08876 * 15 14 10 17 17 C 1.50696 * 120.00312 * 185.08595 * 15 14 10 18 18 S 1.81001 * 109.47484 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00094 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99809 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99811 * 180.02562 * 19 18 17 22 22 N 1.31626 * 120.00470 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99879 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46775 * 59.99890 * 23 21 19 25 25 H 1.48494 * 109.46851 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46904 * 299.99934 * 23 21 19 27 27 C 1.36540 * 108.02674 * 0.02562 * 5 4 3 28 28 H 1.09003 * 109.47167 * 270.16801 * 1 2 3 29 29 H 1.08993 * 109.46887 * 30.17470 * 1 2 3 30 30 H 1.09000 * 109.47132 * 150.17377 * 1 2 3 31 31 H 1.08007 * 125.61916 * 0.04662 * 3 2 1 32 32 H 0.97006 * 120.00186 * 0.02562 * 8 6 5 33 33 H 1.09001 * 109.47189 * 304.93502 * 9 8 6 34 34 H 1.08990 * 109.47164 * 64.93545 * 9 8 6 35 35 H 1.08996 * 113.73924 * 336.44004 * 12 10 9 36 36 H 1.08998 * 113.73939 * 107.74444 * 12 10 9 37 37 H 1.09003 * 113.77011 * 137.90745 * 13 12 10 38 38 H 1.09004 * 113.77170 * 269.19140 * 13 12 10 39 39 H 1.08995 * 109.47523 * 300.00199 * 17 15 14 40 40 H 1.09003 * 109.47071 * 60.00282 * 17 15 14 41 41 H 0.96991 * 120.00423 * 179.97438 * 22 21 19 42 42 H 1.07999 * 126.64869 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6804 -0.0064 5 6 3.6260 -0.6682 -0.0045 6 6 4.8378 -1.4942 -0.0104 7 8 4.7471 -2.7078 -0.0083 8 7 6.0520 -0.9093 -0.0181 9 6 7.2625 -1.7345 -0.0246 10 6 8.4941 -0.8340 0.0914 11 1 8.4959 -0.0204 -0.6338 12 6 9.8237 -1.6071 0.1601 13 6 10.2344 -0.6052 1.2543 14 7 8.7866 -0.4012 1.4717 15 6 8.0351 0.0126 2.5111 16 8 6.8251 -0.0040 2.4292 17 6 8.6981 0.4957 3.7752 18 16 7.4312 0.9775 4.9749 19 6 8.4563 1.4864 6.3146 20 1 9.5311 1.4368 6.2212 21 6 7.8823 1.9500 7.4903 22 7 6.5724 2.0100 7.6042 23 14 8.9691 2.4889 8.9110 24 1 9.8399 3.6084 8.4710 25 1 8.1183 2.9391 10.0417 26 1 9.8128 1.3481 9.3491 27 6 2.3408 -1.1293 0.0028 28 1 -0.3634 0.0030 1.0277 29 1 -0.3633 0.8884 -0.5165 30 1 -0.3633 -0.8915 -0.5111 31 1 1.9771 2.1146 0.0007 32 1 6.1244 0.0580 -0.0194 33 1 7.2363 -2.4246 0.8186 34 1 7.3120 -2.2996 -0.9552 35 1 9.7181 -2.6307 0.5194 36 1 10.4213 -1.5339 -0.7486 37 1 10.7464 -1.0640 2.1003 38 1 10.7498 0.2760 0.8723 39 1 9.3088 -0.3042 4.1938 40 1 9.3298 1.3546 3.5487 41 1 6.1714 2.3336 8.4259 42 1 2.0266 -2.1625 0.0057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584777152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:14 Heat of formation + Delta-G solvation = -48.196133 kcal Electronic energy + Delta-G solvation = -26334.742185 eV Core-core repulsion = 22408.088146 eV Total energy + Delta-G solvation = -3926.654039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.71477 -41.48565 -40.32403 -38.70407 -35.92441 -35.09037 -34.61659 -32.25259 -31.68525 -29.68913 -29.34338 -28.02939 -27.66720 -25.13593 -23.45024 -23.00360 -22.18855 -21.12374 -20.21644 -19.49525 -18.96680 -17.93324 -17.51370 -17.39537 -17.31578 -16.98705 -16.89747 -16.46346 -16.10033 -15.65484 -15.58295 -14.89838 -14.66946 -14.45523 -14.42475 -14.12223 -13.97481 -13.78303 -13.54670 -13.45767 -13.29306 -13.15386 -13.06571 -12.88961 -12.64346 -12.58336 -12.33921 -12.11931 -11.76734 -11.43964 -11.15669 -10.76543 -10.72363 -10.30792 -10.26703 -9.70885 -9.55839 -8.69913 -8.37153 -6.15840 -0.00658 1.20229 1.30546 1.40800 1.41510 1.51345 1.61355 1.67429 1.95176 2.07695 2.24586 2.26371 2.96674 3.21078 3.43222 3.64800 3.68838 3.72977 3.80038 4.01127 4.01895 4.19040 4.24442 4.31757 4.38011 4.44049 4.48465 4.61521 4.70160 4.73005 4.85511 4.89134 5.01177 5.01611 5.05289 5.05677 5.23689 5.34971 5.37743 5.48767 5.81066 6.16291 6.33661 6.63007 6.93235 7.03568 7.18262 8.71821 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009237 B = 0.003323 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.632290 B = 8424.742497 C =11002.343380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.205 4.205 3 C -0.003 4.003 4 O -0.171 6.171 5 C -0.103 4.103 6 C 0.600 3.400 7 O -0.567 6.567 8 N -0.693 5.693 9 C 0.118 3.882 10 C 0.119 3.881 11 H 0.125 0.875 12 C -0.117 4.117 13 C 0.097 3.903 14 N -0.651 5.651 15 C 0.547 3.453 16 O -0.551 6.551 17 C -0.119 4.119 18 S -0.149 6.149 19 C -0.549 4.549 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.260 1.260 25 H -0.278 1.278 26 H -0.263 1.263 27 C -0.129 4.129 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.248 0.752 32 H 0.409 0.591 33 H 0.047 0.953 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.132 0.868 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.271 0.729 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.372 -3.129 -22.003 22.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.207 4.207 3 C -0.072 4.072 4 O -0.067 6.067 5 C -0.154 4.154 6 C 0.387 3.613 7 O -0.450 6.450 8 N -0.341 5.341 9 C -0.005 4.005 10 C 0.016 3.984 11 H 0.142 0.858 12 C -0.155 4.155 13 C -0.024 4.024 14 N -0.389 5.389 15 C 0.336 3.664 16 O -0.429 6.429 17 C -0.270 4.270 18 S 0.078 5.922 19 C -0.696 4.696 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.185 1.185 25 H -0.203 1.203 26 H -0.187 1.187 27 C -0.150 4.150 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.264 0.736 32 H 0.244 0.756 33 H 0.065 0.935 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.150 0.850 37 H 0.106 0.894 38 H 0.130 0.870 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.592 -3.725 -21.857 22.180 hybrid contribution 1.383 0.693 1.504 2.158 sum 1.975 -3.032 -20.353 20.672 Atomic orbital electron populations 1.20258 0.86159 1.04176 1.03006 1.20880 0.99376 0.91489 1.08908 1.25106 0.78896 1.01837 1.01393 1.84067 1.30911 1.21121 1.70571 1.21964 0.96262 0.81311 1.15912 1.16692 0.82271 0.86039 0.76252 1.90799 1.86812 1.13614 1.53743 1.45668 1.05010 1.11118 1.72300 1.21719 0.82534 0.93574 1.02676 1.23455 0.95093 0.96822 0.83018 0.85763 1.23496 0.92688 0.98630 1.00689 1.23567 0.80585 0.99431 0.98842 1.50426 1.10656 1.66360 1.11467 1.19727 0.86506 0.76081 0.84100 1.90714 1.15150 1.54700 1.82332 1.23268 1.02984 1.04290 0.96439 1.85570 1.11762 1.83879 1.10994 1.23158 0.94868 1.50342 1.01262 0.90129 1.26138 0.96901 0.94761 1.01271 1.70175 1.11537 1.44751 1.28287 0.85007 0.77716 0.79040 0.76251 1.18491 1.20269 1.18721 1.22086 0.90761 1.01407 1.00747 0.90995 0.89136 0.90726 0.73566 0.75594 0.93495 0.87767 0.88583 0.85036 0.89381 0.86982 0.88513 0.87968 0.91965 0.82310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 10.39 71.24 0.74 -0.48 16 2 C -0.21 -4.76 6.14 -20.06 -0.12 -4.89 16 3 C 0.00 -0.07 12.00 67.10 0.81 0.74 16 4 O -0.17 -5.12 10.40 -5.09 -0.05 -5.18 16 5 C -0.10 -3.38 7.13 24.07 0.17 -3.20 16 6 C 0.60 21.11 7.79 86.44 0.67 21.78 16 7 O -0.57 -22.64 16.86 -4.32 -0.07 -22.71 16 8 N -0.69 -20.66 4.18 -467.11 -1.95 -22.61 16 9 C 0.12 2.83 5.22 86.38 0.45 3.28 16 10 C 0.12 2.05 4.29 45.10 0.19 2.24 16 11 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 12 C -0.12 -1.10 7.86 31.25 0.25 -0.86 16 13 C 0.10 1.33 8.63 86.43 0.75 2.07 16 14 N -0.65 -16.20 3.50 -810.66 -2.84 -19.03 16 15 C 0.55 20.67 7.99 87.66 0.70 21.37 16 16 O -0.55 -25.45 14.40 -3.05 -0.04 -25.50 16 17 C -0.12 -4.89 5.92 71.23 0.42 -4.47 16 18 S -0.15 -8.48 20.57 -56.49 -1.16 -9.65 16 19 C -0.55 -31.88 9.50 67.95 0.65 -31.24 16 20 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 21 C 0.01 0.81 5.49 84.86 0.47 1.28 16 22 N -0.91 -56.73 13.22 21.65 0.29 -56.44 16 23 Si 1.00 43.95 29.55 68.60 2.03 45.98 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 25 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 27 C -0.13 -3.77 10.57 22.39 0.24 -3.54 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.25 3.13 8.06 -2.91 -0.02 3.11 16 32 H 0.41 11.93 7.89 -92.70 -0.73 11.20 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.10 1.01 8.10 -2.39 -0.02 0.99 16 36 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.10 3.73 8.14 -2.40 -0.02 3.71 16 40 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 41 H 0.27 15.69 8.31 -92.72 -0.77 14.92 16 42 H 0.16 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -88.65 380.69 2.88 -85.77 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.32 Total: 25.29 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 6.37 Total: 4.09 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -4.50 Total: -98.09 kcal Atomic # 8 Polarization: -53.22 SS G_CDS: -0.17 Total: -53.39 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.65 kcal Total: -88.65 2.88 -85.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584777152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.570 kcal (2) G-P(sol) polarization free energy of solvation -88.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds