Wall clock time and date at job start Tue Mar 31 2020 21:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47249 * 2 1 4 4 H 1.09002 * 109.46619 * 305.69404 * 3 2 1 5 5 C 1.50703 * 109.47275 * 185.69981 * 3 2 1 6 6 H 1.08001 * 119.99680 * 245.44219 * 5 3 2 7 7 C 1.37877 * 120.00073 * 65.43943 * 5 3 2 8 8 N 1.31517 * 119.99867 * 356.38354 * 7 5 3 9 9 Si 1.86801 * 119.99907 * 176.38577 * 7 5 3 10 10 H 1.48495 * 109.47266 * 94.99603 * 9 7 5 11 11 H 1.48506 * 109.46771 * 214.99643 * 9 7 5 12 12 H 1.48497 * 109.46961 * 334.99233 * 9 7 5 13 13 N 1.46497 * 109.46879 * 65.69718 * 3 2 1 14 14 C 1.34775 * 119.99896 * 274.99754 * 13 3 2 15 15 O 1.21358 * 120.00054 * 0.02562 * 14 13 3 16 16 C 1.49346 * 119.99979 * 180.02562 * 14 13 3 17 17 O 1.21378 * 119.99993 * 0.02562 * 16 14 13 18 18 N 1.34778 * 119.99972 * 180.27572 * 16 14 13 19 19 C 1.39840 * 119.99777 * 174.59745 * 18 16 14 20 20 C 1.39111 * 119.96567 * 146.57435 * 19 18 16 21 21 C 1.38093 * 120.27998 * 180.02562 * 20 19 18 22 22 C 1.38341 * 120.20515 * 359.97438 * 21 20 19 23 23 F 1.35099 * 120.03632 * 180.02562 * 22 21 20 24 24 C 1.39887 * 119.92880 * 0.02562 * 22 21 20 25 25 C 1.47578 * 120.14036 * 180.02562 * 24 22 21 26 26 O 1.21488 * 119.99420 * 359.97438 * 25 24 22 27 27 O 1.34718 * 120.00097 * 179.97438 * 25 24 22 28 28 C 1.38532 * 119.96659 * 326.29874 * 19 18 16 29 29 H 1.09004 * 109.46856 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47142 * 299.99683 * 1 2 3 31 31 H 1.08997 * 109.47482 * 60.00426 * 1 2 3 32 32 H 1.09005 * 109.47538 * 239.99523 * 2 1 3 33 33 H 1.09010 * 109.47338 * 119.99797 * 2 1 3 34 34 H 0.97005 * 119.99537 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00158 * 95.00616 * 13 3 2 36 36 H 0.97000 * 119.99722 * 354.60600 * 18 16 14 37 37 H 1.08003 * 119.85998 * 0.02562 * 20 19 18 38 38 H 1.07994 * 119.89705 * 180.02562 * 21 20 19 39 39 H 0.96705 * 116.99996 * 179.97438 * 27 25 24 40 40 H 1.07996 * 120.10382 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5404 1.4449 -0.1411 6 1 4.1582 1.8061 0.6677 7 6 4.1243 0.9859 -1.3027 8 7 3.3766 0.4801 -2.2592 9 14 5.9774 1.0823 -1.5179 10 1 6.5900 -0.2100 -1.1184 11 1 6.2965 1.3625 -2.9410 12 1 6.5186 2.1712 -0.6656 13 7 1.6668 2.0924 1.2588 14 6 0.4510 2.6588 1.3902 15 8 -0.3349 2.6301 0.4658 16 6 0.0707 3.3218 2.6733 17 8 0.8569 3.3509 3.5976 18 7 -1.1472 3.8834 2.8065 19 6 -1.5458 4.4038 4.0418 20 6 -2.3739 5.5205 4.0908 21 6 -2.7710 6.0401 5.3070 22 6 -2.3482 5.4529 6.4861 23 9 -2.7392 5.9638 7.6741 24 6 -1.5153 4.3297 6.4470 25 6 -1.0619 3.6993 7.7020 26 8 -1.4116 4.1562 8.7720 27 8 -0.2603 2.6174 7.6610 28 6 -1.1202 3.8033 5.2154 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 3.7875 0.1576 -3.0766 35 1 2.2948 2.1151 1.9977 36 1 -1.7473 3.9264 2.0456 37 1 -2.7077 5.9830 3.1736 38 1 -3.4143 6.9069 5.3378 39 1 0.0109 2.2396 8.5089 40 1 -0.4806 2.9339 5.1781 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:49 Heat of formation + Delta-G solvation = -175.213206 kcal Electronic energy + Delta-G solvation = -28611.521577 eV Core-core repulsion = 24113.146488 eV Total energy + Delta-G solvation = -4498.375089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.116 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.20495 -41.14246 -40.35006 -39.16608 -38.00515 -36.33537 -35.60171 -34.78592 -32.48864 -32.03604 -31.12034 -29.80606 -27.34708 -25.29941 -25.02597 -23.40316 -22.77584 -21.47981 -20.44332 -19.61471 -19.07392 -18.23091 -18.11606 -17.68699 -16.76466 -16.43085 -16.33307 -16.19635 -15.72791 -15.55473 -15.44742 -15.16730 -14.59654 -14.37433 -14.07524 -13.82156 -13.54909 -13.47498 -13.15170 -12.87041 -12.80292 -12.19145 -12.06883 -11.83162 -11.70012 -11.42004 -11.33041 -11.06077 -10.95976 -10.89991 -10.60453 -10.44160 -10.33380 -9.80216 -9.69861 -9.22185 -9.17469 -8.67582 -8.49977 -8.11665 -6.24031 -4.33154 0.10494 0.63717 1.62107 2.16455 2.41565 2.63324 3.15127 3.19761 3.27539 3.30577 3.56474 3.74453 3.87048 4.18291 4.27918 4.44166 4.65727 4.86017 4.91450 4.99753 5.09218 5.34863 5.54787 5.55982 5.74515 5.89577 6.16406 6.23822 6.27420 6.36610 6.46508 6.81583 6.86530 7.01055 7.04989 7.19507 7.37708 7.55508 7.58095 7.65726 7.74017 7.97251 8.33111 8.53057 8.77829 9.33988 10.82335 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.002467 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.915019 B =11347.149143 C =11877.037705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C 0.268 3.732 4 H 0.058 0.942 5 C -0.539 4.539 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.665 5.665 14 C 0.495 3.505 15 O -0.527 6.527 16 C 0.507 3.493 17 O -0.500 6.500 18 N -0.651 5.651 19 C 0.130 3.870 20 C -0.077 4.077 21 C -0.144 4.144 22 C 0.146 3.854 23 F -0.116 7.116 24 C -0.147 4.147 25 C 0.530 3.470 26 O -0.503 6.503 27 O -0.504 6.504 28 C -0.038 4.038 29 H 0.027 0.973 30 H 0.036 0.964 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.036 0.964 34 H 0.266 0.734 35 H 0.402 0.598 36 H 0.427 0.573 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.417 0.583 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.799 7.194 13.380 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 C 0.167 3.833 4 H 0.076 0.924 5 C -0.577 4.577 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.314 5.314 14 C 0.273 3.727 15 O -0.406 6.406 16 C 0.290 3.710 17 O -0.373 6.373 18 N -0.299 5.299 19 C 0.035 3.965 20 C -0.097 4.097 21 C -0.163 4.163 22 C 0.126 3.874 23 F -0.094 7.094 24 C -0.149 4.149 25 C 0.374 3.626 26 O -0.393 6.393 27 O -0.316 6.316 28 C -0.058 4.058 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.116 0.884 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.237 0.763 36 H 0.266 0.734 37 H 0.166 0.834 38 H 0.170 0.830 39 H 0.276 0.724 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.921 7.335 13.061 19.144 hybrid contribution 1.099 -0.098 0.582 1.247 sum -10.822 7.237 13.643 18.858 Atomic orbital electron populations 1.21862 0.98212 0.98525 1.01089 1.21947 0.92742 0.99365 1.02426 1.19055 0.95042 0.89421 0.79807 0.92421 1.21187 0.90248 1.44285 1.01957 0.91738 1.24874 0.98787 0.94413 0.95422 1.69914 1.35435 1.39527 1.06904 0.86406 0.84478 0.78516 0.77606 1.20518 1.20971 1.19684 1.46498 1.13100 1.52469 1.19298 1.19491 0.84691 0.81672 0.86830 1.90757 1.50338 1.59475 1.40007 1.21154 0.81265 0.78538 0.90021 1.90769 1.49667 1.55558 1.41310 1.43258 1.17410 1.57907 1.11353 1.17648 0.98811 0.94399 0.85671 1.21092 0.97042 0.92834 0.98734 1.20902 1.03305 1.02274 0.89867 1.17632 0.95434 0.92535 0.81846 1.91599 1.88444 1.85540 1.43787 1.18921 1.04916 0.98899 0.92209 1.20448 0.75535 0.78036 0.88620 1.90953 1.54579 1.62455 1.31272 1.84590 1.62333 1.43015 1.41615 1.21440 0.96614 0.98959 0.88801 0.95412 0.94528 0.92892 0.88433 0.94543 0.92407 0.76331 0.73403 0.83387 0.83008 0.72377 0.82048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.53 37.15 0.32 -2.49 16 2 C -0.13 -2.83 5.49 -26.73 -0.15 -2.98 16 3 C 0.27 6.25 2.17 -69.08 -0.15 6.10 16 4 H 0.06 1.53 7.58 -51.93 -0.39 1.14 16 5 C -0.54 -13.54 8.67 -34.44 -0.30 -13.83 16 6 H 0.06 1.57 7.72 -52.49 -0.41 1.17 16 7 C 0.07 1.77 5.34 -17.82 -0.10 1.67 16 8 N -0.88 -23.50 11.57 55.43 0.64 -22.86 16 9 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 N -0.66 -13.04 5.02 -55.40 -0.28 -13.31 16 14 C 0.49 8.81 6.49 -11.63 -0.08 8.73 16 15 O -0.53 -10.20 13.62 5.49 0.07 -10.13 16 16 C 0.51 7.50 7.62 -11.63 -0.09 7.41 16 17 O -0.50 -8.11 14.17 5.47 0.08 -8.03 16 18 N -0.65 -7.34 5.33 -10.32 -0.05 -7.40 16 19 C 0.13 1.34 6.27 -83.77 -0.52 0.81 16 20 C -0.08 -0.58 9.95 -39.31 -0.39 -0.97 16 21 C -0.14 -1.10 10.00 -39.60 -0.40 -1.50 16 22 C 0.15 1.54 7.28 -38.93 -0.28 1.26 16 23 F -0.12 -1.40 15.54 2.25 0.03 -1.37 16 24 C -0.15 -1.69 5.88 -104.95 -0.62 -2.31 16 25 C 0.53 6.34 8.27 34.54 0.29 6.63 16 26 O -0.50 -7.21 16.12 -19.26 -0.31 -7.52 16 27 O -0.50 -4.78 12.68 -40.54 -0.51 -5.29 16 28 C -0.04 -0.44 8.22 -38.95 -0.32 -0.76 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.70 5.63 -51.93 -0.29 0.41 16 31 H 0.05 1.12 7.89 -51.93 -0.41 0.71 16 32 H 0.10 2.44 6.27 -51.93 -0.33 2.11 16 33 H 0.04 0.79 8.14 -51.92 -0.42 0.36 16 34 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 35 H 0.40 7.40 8.00 -40.82 -0.33 7.07 16 36 H 0.43 4.04 8.30 -40.82 -0.34 3.70 16 37 H 0.15 0.69 8.06 -52.48 -0.42 0.27 16 38 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.42 1.94 9.11 45.56 0.42 2.36 16 40 H 0.16 2.07 5.98 -52.49 -0.31 1.76 16 LS Contribution 352.23 15.07 5.31 5.31 Total: -1.00 -31.14 352.23 -6.04 -37.18 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -3.22 Total: 10.72 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -2.78 Total: 7.80 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.31 Total: -43.57 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.67 Total: -30.97 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.03 Total: -1.37 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.14 -6.04 -37.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.033 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds